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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1407 fasta sequence
[ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGTCGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCCCCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCACGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGCCGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAGGCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGAAGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGGCTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGAGCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGGATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTGTATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCATCTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACAGAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTTGAGATCAAACCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTCTGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATACCTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCGAGGGATAGGTATCTAACCAAATTACGCTGGAATTTTATGATCAAAGCACATTCGATCAAGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT]
[+] EMBL CB666848 [ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGTCGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCCCCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCACGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGCCGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAGGCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGAAGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGGCTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGAGCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGGATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTGTATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCATCTAAA ]
[-] EMBL CB666849 [ ATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCAACTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACAGAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTTGAGATCAAACCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTCTGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATACCTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCGAGGGATAGGTATCTAACCAAATTACGCTGGAATTTTATGATCAAAGCACATTCGATCAAGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT]
consensusID : consensus_4161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATCTGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGCGGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAATCTGAATCGTGTTGATTAGCACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGGCATGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAAATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTTCTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA]
[-] EMBL CA763331 [ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATCTGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGCGGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAATCTGAATCGTGTTGATTAGCACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGGCATGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAAATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTTCTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4161#0 ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGT 60
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCC 120
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCA 180
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGC 240
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAG 300
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 GCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGA 360
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 AGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGG 420
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGA 480
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 GCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGG 540
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 ATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTG 600
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 TATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATG 660
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTA 720
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 TGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTAT 780
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 CAAGAGTTGCATCTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACA 840
consensus_4161#1 ------------------------------------------------------------
consensus_4161#0 GAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTG 900
consensus_4161#1 ----------ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTG 50
********** ***************************************
consensus_4161#0 AAAATTGTGTTGAGATCAAACC-TTGGAAGCTTGAAAATGATGACACTCAACTGCTTGAT 959
consensus_4161#1 AAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGAT 110
********** *********** *************************************
consensus_4161#0 CTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTT 1019
consensus_4161#1 CTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTT 170
**************************************** ****** ***********
consensus_4161#0 GCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAG 1079
consensus_4161#1 GCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAG 230
************************************************************
consensus_4161#0 AGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTT 1139
consensus_4161#1 AGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTT 290
********************** *************************************
consensus_4161#0 TGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTC 1199
consensus_4161#1 TGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATC 350
************************************ *** * *** **
consensus_4161#0 TGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATAC--- 1256
consensus_4161#1 TGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGC 410
** * ** * ** * * * ** * ** * * *** * *
consensus_4161#0 ---CTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCG 1313
consensus_4161#1 GGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAAT-CTG 469
** * * ** *** ** * * * ** * * ** * * *
consensus_4161#0 AGGGATAGGTATCTAACCAAATTACGCTGGAATTTTA--TGATCAAAGCACATTCGATCA 1371
consensus_4161#1 AATCGT-GTTGATTAGC--ACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGG-CA 525
* * * * ** * * * * *** * *** * ** *** * ** * **
consensus_4161#0 AGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT------------------------ 1407
consensus_4161#1 TGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAA 585
* ** ** **** ** ** * *** *
consensus_4161#0 ------------------------------------------------------------
consensus_4161#1 ATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTT 645
consensus_4161#0 --------------------------------------------------
consensus_4161#1 CTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA 695
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||