These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1407 fasta sequence [ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGTCGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCCCCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCACGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGCCGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAGGCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGAAGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGGCTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGAGCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGGATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTGTATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCATCTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACAGAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTTGAGATCAAACCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTCTGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATACCTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCGAGGGATAGGTATCTAACCAAATTACGCTGGAATTTTATGATCAAAGCACATTCGATCAAGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT] [+] EMBL CB666848 [ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGTCGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCCCCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCACGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGCCGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAGGCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGAAGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGGCTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGAGCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGGATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTGTATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCATCTAAA ] [-] EMBL CB666849 [ ATGGAGAACTTTTAAGAGGCCAGGAGTGGATGCCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTATGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTATCAAGAGTTGCAACTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACAGAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTTGAGATCAAACCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTCTGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATACCTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCGAGGGATAGGTATCTAACCAAATTACGCTGGAATTTTATGATCAAAGCACATTCGATCAAGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT] consensusID : consensus_4161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATCTGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGCGGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAATCTGAATCGTGTTGATTAGCACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGGCATGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAAATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTTCTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA] [-] EMBL CA763331 [ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTGAAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGATCTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTTGCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAGAGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTTTGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATCTGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGCGGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAATCTGAATCGTGTTGATTAGCACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGGCATGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAAATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTTCTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4161#0 ACCGAGGTCCTCTCCCCCTCCTCTCGCTGGGCCACCACGCCATGGACGGCGTCGCGAGGT 60 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CGCGCCTCCTCGTCCCGCTCCTCCCCAGGATCTCCGCCCGCTCCTTCTCCGCCGCCTCCC 120 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CCGCGTCAGAGCCAGCGGCGGCTGCGGCGGCCGTCGCCGCCTCCGACGCGGCCGCCGCCA 180 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CGGACTACTCGTCCTCCGCGGGCGATCCCTCGTCCGCGCCGCCCCCGCCGGCCCGCAAGC 240 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CGCTGGGCCTGCTCAAGGGCGGCGTCCTCGCGGTTGTCGCCGCCGCGTTCGGCGCCACAG 300 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 GCTACGTCAGCTATGCTTATTCTCTGGATGAAATTGATCAGAGGACGCGGGAGTTCCGGA 360 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 AGAACTCGAAGCAGCCCATCCGTGATGACCTGTCCGGTTTCGAGAAGTTTCAGGCTATGG 420 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CTTATTCAGCAGCTATGAAAGTTCCTGTTGCTGCTATTGAGTTCTATTTGGATACCAGGA 480 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 GCCAAATAGAAGATCAAATTCGGGGCTTTAGTGAACCATCATCAGATAAACTTCTTCCGG 540 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 ATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTG 600 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 TATACTCAGATTGGAAGCGTGAGCGAGGATGGAGAACTTTTAAGAGGCCAGGAGTGGATG 660 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CCTTTTTGGAACATCTTGGAAAATTCTATGAAATTGTTGTGTACTCTGATCAGCTGAGTA 720 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 TGTATGTTGATCCTGTTATTGAAAGACTGGATCCAAAGGGCTGTGTTCAGCACAGGTTAT 780 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 CAAGAGTTGCATCTAAATATGAAAATGGAAAACACTATCGGGATTTATCAAAGCTAAACA 840 consensus_4161#1 ------------------------------------------------------------ consensus_4161#0 GAAATCCCGCACAAGTCATTTATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTG 900 consensus_4161#1 ----------ACAAGTCATTNATATCAGTGGGCATGCTCTGGAATCATGCCTGCAGCCTG 50 ********** *************************************** consensus_4161#0 AAAATTGTGTTGAGATCAAACC-TTGGAAGCTTGAAAATGATGACACTCAACTGCTTGAT 959 consensus_4161#1 AAAATTGTGTCGAGATCAAACCCTTGGAAGCTTGAAAATGATGACACTCAACTGCTTGAT 110 ********** *********** ************************************* consensus_4161#0 CTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTCGGATATCAGGGCTGTTCTT 1019 consensus_4161#1 CTTATTCCCTTTCTTGAATATGTTGCTATGGCAAGACCTTNGGATATNGGGGCTGTTCTT 170 **************************************** ****** *********** consensus_4161#0 GCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAG 1079 consensus_4161#1 GCGTCCTATCAAGGCCGTGATATACCTGCTGAGTTTATTGAGCGTTCAAAGGAGCACCAG 230 ************************************************************ consensus_4161#0 AGGCGCATGCAGGAGCAAAAGCATCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTT 1139 consensus_4161#1 AGGCGCATGCAGGAGCAAAAGCGTCAGGGCCGCTTATGGCGGAGATGATTATAGATCTTT 290 ********************** ************************************* consensus_4161#0 TGGAAGGAAATCTGAGTAATCTACAACACTTTACAGGCACGACACCTCTGTTCTGAGTTC 1199 consensus_4161#1 TGGAAGGAAATCTGAGTAATCTACAACACTTTACAGATTGCACAGAAGAAATGTGAAATC 350 ************************************ *** * *** ** consensus_4161#0 TGAGTGAGCCTTTTAATTTCGGAATTGTAATTTTGTCAACTTGGGTCCCAGAGATAC--- 1256 consensus_4161#1 TGTGGAGGCTCTGGGCTTGTGATGAAGAAGGATTACTACGTTCGCTGCCAAGGGTGTGGC 410 ** * ** * ** * * * ** * ** * * *** * * consensus_4161#0 ---CTTTTACTTTGATAGTTATTGCACGTTCCCCCCCCCCCTTTTTTCTTATTCGTACCG 1313 consensus_4161#1 GGTTTTCTTCCGTGGCAGTCATGGAGAAGATTCTTCACCGGCTGAAAATCGTTAAT-CTG 469 ** * * ** *** ** * * * ** * * ** * * * consensus_4161#0 AGGGATAGGTATCTAACCAAATTACGCTGGAATTTTA--TGATCAAAGCACATTCGATCA 1371 consensus_4161#1 AATCGT-GTTGATTAGC--ACTAGCACTGCAGTTTGAGTTGGACAAGGAGGATATGG-CA 525 * * * * ** * * * * *** * *** * ** *** * ** * ** consensus_4161#0 AGGGAGGAACATGTCATTAAAAGAATTTTGTTTGGT------------------------ 1407 consensus_4161#1 TGACCAGACCAGGTCAATATTGTGTTTATAGTTGTTGTCTATAACATATCTCCACTACAA 585 * ** ** **** ** ** * *** * consensus_4161#0 ------------------------------------------------------------ consensus_4161#1 ATGGCCAAATAGGTTCATCGAGATGTATCACAATAGTACACTGTAATCATGGTCATGGTT 645 consensus_4161#0 -------------------------------------------------- consensus_4161#1 CTTCTGTCTATACCATGCATATGACGCAGCATATGNCCAAAAAAAAAAAA 695 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||