cluster # 4179

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Oryza sativa
cluster # 4179 cluster # 4179 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4179#0 length = 471 sequences # 2

consensus_4179#1 length = 347 sequences # 1

consensusID : consensus_4179#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [CGGCGGGAGGGATATGGCGGAGAAGAGGCTGCTGCTGCTGCCGGTGGCGCTGGCGATGGCGCAGAAGCATGGGGGAGGAGGGGAGAGGGTGTGGGCGCGGCCGTGGAGGTGGGCCAAGACGGCGTTCTTCGTCGTCGCCATGATCGCGTCGCTGCTGCTCGTCTGCGCGCCGCCGGTGCTCGTCGTGATACTCGACCTCGCCCTCCCGCCCGCGCTCCTCTCCGCGCGCCTCCGCGGCGGCGGGGGCGGGGACGACGCGTCGTTCGTGGCGGCCGTCGTCGCGCAGGCGCGGGCGTTCGACTTCCGCTCGTCGCTCGTCGACCTCCTCGCCGTCTCCGCCGCGCGCGCGCTGCTCATACTCGGCGCGTACATGGCGTGCGGCGGCGGAGGCGCGGCGTACCTGTGGGTGGTGGCGACGAGCGCGGCGGGGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCT]

[+] EMBL AK109098             [CGGCGGGAGGGATATGGCGGAGAAGAGGCTGCTGCTGCTGCCGGTGGCGCTGGCGATGGCGCAGAAGCATGGGGGAGGAGGGGAGAGGGTGTGGGCGCGGCCGTGGAGGTGGGCCAAGACGGCGTTCTTCGTCGTCGCCATGATCGCGTCGCTGCTGCTCGTCTGCGCGCCGCCGGTGCTCGTCGTGATACTCGACCTCGCCCTCCCGCCCGCGCTCCTCTCCGCGCGCCTCCGCGGCGGCGGGGGCGGGGACGACGCGTCGTTCGTGGCGGCCGTCGTCGCGCAGGCGCGGGCGTTCGACTTCCGCTCGTCGCTCGTCGACCTCCTCGCCGTCTCCGCCGCGCGCGCGCTGCTCATACTCGGCGCGTACATGGCGTGCGGCGGCGGAGGCGCGGCGTACCTGTGGGTGGTGGCGACGAGCGCGGCGGGGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCT]
[+] EMBL CA755771             [                                                                                                                                                                                                                                                                                                                                                                                                          GCGTACCTGTGGGTGGTGGCGACGAGCGCGGCGGGGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCT]




>consensus_4179#0
CGGCGGGAGGGATATGGCGGAGAAGAGGCTGCTGCTGCTGCCGGTGGCGCTGGCGATGGC
GCAGAAGCATGGGGGAGGAGGGGAGAGGGTGTGGGCGCGGCCGTGGAGGTGGGCCAAGAC
GGCGTTCTTCGTCGTCGCCATGATCGCGTCGCTGCTGCTCGTCTGCGCGCCGCCGGTGCT
CGTCGTGATACTCGACCTCGCCCTCCCGCCCGCGCTCCTCTCCGCGCGCCTCCGCGGCGG
CGGGGGCGGGGACGACGCGTCGTTCGTGGCGGCCGTCGTCGCGCAGGCGCGGGCGTTCGA
CTTCCGCTCGTCGCTCGTCGACCTCCTCGCCGTCTCCGCCGCGCGCGCGCTGCTCATACT
CGGCGCGTACATGGCGTGCGGCGGCGGAGGCGCGGCGTACCTGTGGGTGGTGGCGACGAG
CGCGGCGGGGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCT

consensusID : consensus_4179#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence

                              [ANCNGNGTGCAGANCTCNANCNGTCCCCCTTCAACCATCNGCCTCNAGACNGCGAAAATCCATAGCCCACGACTCTATAGCTAGCTCGCTCCNGCACNGCGACCACCACCACAGCTGGCAGCGGGAGGGATATNGCGGAGAAGAGGCTGCTGCTGCTGCCGNTTAGGCTTGGCGATNGCGCAGAAGCATNGGGGAGGAGGGGAGAGGGTGTNGGCACNGCGTNGAGGTAGGCCAAGACGGCGTTCTTCGTCGTCGCCATGATCGCNCCGCTGCTGCTCGTCTNCGCGCCGCGNTTCTCGTCGTGATACTCGACCTCGCCCTCCCTGCCCGTGCTCCTATTCGCGNGG]

[+] EMBL OSC585               [ANCNGNGTGCAGANCTCNANCNGTCCCCCTTCAACCATCNGCCTCNAGACNGCGAAAATCCATAGCCCACGACTCTATAGCTAGCTCGCTCCNGCACNGCGACCACCACCACAGCTGGCAGCGGGAGGGATATNGCGGAGAAGAGGCTGCTGCTGCTGCCGNTTAGGCTTGGCGATNGCGCAGAAGCATNGGGGAGGAGGGGAGAGGGTGTNGGCACNGCGTNGAGGTAGGCCAAGACGGCGTTCTTCGTCGTCGCCATGATCGCNCCGCTGCTGCTCGTCTNCGCGCCGCGNTTCTCGTCGTGATACTCGACCTCGCCCTCCCTGCCCGTGCTCCTATTCGCGNGG]




>consensus_4179#1
ANCNGNGTGCAGANCTCNANCNGTCCCCCTTCAACCATCNGCCTCNAGACNGCGAAAATC
CATAGCCCACGACTCTATAGCTAGCTCGCTCCNGCACNGCGACCACCACCACAGCTGGCA
GCGGGAGGGATATNGCGGAGAAGAGGCTGCTGCTGCTGCCGNTTAGGCTTGGCGATNGCG
CAGAAGCATNGGGGAGGAGGGGAGAGGGTGTNGGCACNGCGTNGAGGTAGGCCAAGACGG
CGTTCTTCGTCGTCGCCATGATCGCNCCGCTGCTGCTCGTCTNCGCGCCGCGNTTCTCGT
CGTGATACTCGACCTCGCCCTCCCTGCCCGTGCTCCTATTCGCGNGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4179#0      ------------------------------------------------------------
consensus_4179#1      ANCNGNGTGCAGANCTCNANCNGTCCCCCTTCAACCATCNGCCTCNAGACNGCGAAAATC 60
                                                                                  

consensus_4179#0      ----------------------------------------------------------CG 2
consensus_4179#1      CATAGCCCACGACTCTATAGCTAGCTCGCTCCNGCACNGCGACCACCACCACAGCTGGCA 120
                                                                                * 

consensus_4179#0      GCGGGAGGGATATGGCGGAGAAGAGGCTGCTGCTGCTGCCGGTGGCGCT-GGCGATGGCG 61
consensus_4179#1      GCGGGAGGGATATNGCGGAGAAGAGGCTGCTGCTGCTGCCGNTTAGGCTTGGCGATNGCG 180
                      ************* *************************** *   *** ****** ***

consensus_4179#0      CAGAAGCATGGGGGAGGAGGGGAGAGGGTGTGGGCGCGGCCGTGGAGGTGGGCCAAGACG 121
consensus_4179#1      CAGAAGCATNGGGGAGGAGGGGAGAGGGTGTNGGCACNGC-GTNGAGGTAGGCCAAGACG 239
                      ********* ********************* *** * ** ** ***** **********

consensus_4179#0      GCGTTCTTCGTCGTCGCCATGATCGCGTCGCTGCTGCTCGTCTGCGCGCCGCCGGTGCTC 181
consensus_4179#1      GCGTTCTTCGTCGTCGCCATGATCGCNCCGCTGCTGCTCGTCTNCGCGCCGC-GNTTCTC 298
                      **************************  *************** ******** * * ***

consensus_4179#0      GTCGTGATACTCGACCTCGCCCTCCC-GCCCGCGCTCCTCTCCGCGCGCCTCCGCGGCGG 240
consensus_4179#1      GTCGTGATACTCGACCTCGCCCTCCCTGCCCGTGCTCCTATTCGCGNGG----------- 347
                      ************************** ***** ****** * **** *            

consensus_4179#0      CGGGGGCGGGGACGACGCGTCGTTCGTGGCGGCCGTCGTCGCGCAGGCGCGGGCGTTCGA 300
consensus_4179#1      ------------------------------------------------------------
                                                                                  

consensus_4179#0      CTTCCGCTCGTCGCTCGTCGACCTCCTCGCCGTCTCCGCCGCGCGCGCGCTGCTCATACT 360
consensus_4179#1      ------------------------------------------------------------
                                                                                  

consensus_4179#0      CGGCGCGTACATGGCGTGCGGCGGCGGAGGCGCGGCGTACCTGTGGGTGGTGGCGACGAG 420
consensus_4179#1      ------------------------------------------------------------
                                                                                  

consensus_4179#0      CGCGGCGGGGTCGGTGTCCTACGTGCTGGCCAAGGCCGCCGCCGCCGTGCT 471
consensus_4179#1      ---------------------------------------------------