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Oryza sativa
cluster # 4188 cluster # 4188       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4188#0 length = 1151 sequences # 3  

consensusID : consensus_4188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1151
fasta sequence
                              [AACGCGCGCGCCAGAGCTAGGTGGTTAGCCCAAGCTCGCGAGATCGATCGCTACTATAGGCTAAGGACACGTACATGGCGCAGCTCCCGCCCAAGATCCCGGTGGCGGCGCCGGGGCACCACCAGCACTGGGCCTCGGCCGGGGGCGCCGGCGACGCGGCGTGGGCGGATGAGTTCGCCGAGTTCGCGGCGTCGCGGCGGGGCGCGCACCGCCGGTCGCTGAGCGACTCCGTGGCGTTCGTCGAGGTGGCGCCGGCGGGGTGCGGGGCGGGCGGCGAGTTCGACAGGCTCGACGACGACCAGCTCATGTCTATGTTCCCCGACGAGGGCGGGTCGTCGGCCCCGGGGTCCGACAACGGCGGCAGCGACAGCGACGGCGGCGGCGACAAGCACGCCGCGGCGCAGAGCGACGACGGGCAGCACGCCGCCGGGGAGCCGACGCAGGAGCAGGCGGCGGCCACCTCGCCGACGGAGCTGATCCGGGACCCCAAGAGGGTCAAGAGGATACTGGCTAATCGGCAGTCGGCCCAGAGGTCGCGAGTGAGGAAGCTTCAATACATCTCCGAGCTCGAGCGCAGCGTCACAACCCTGCAGAACGAGGTATCCGTGCTGTCCCCTCGGGTGGCGTTTCTGGATCAGCAGCGGACGATCCTGACCGTCGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGCTCATCAGGAGGCGTTGAGGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGAACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCACATGTCCATGGCGGCCCGCCGCCTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTGTGCAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTCTTCTTCTTC-TTTTTTTTTGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCGGTTGTTGATTGGAGTTCTGGTTTACAATGGGAATTGTGGGAGATGTCAATAAGAAAATGTGAACTGCAATAAGATTAACTGTGATTTTTGAAAGCCNNAATTAATAATAATAAAAATATTTAAATTTAATT]

[+] EMBL AK108553             [AACGCGCGCGCCAGAGCTAGGTGGTTAGCCCAAGCTCGCGAGATCGATCGCTACTATAGGCTAAGGACACGTACATGGCGCAGCTCCCGCCCAAGATCCCGGTGGCGGCGCCGGGGCACCACCAGCACTGGGCCTCGGCCGGGGGCGCCGGCGACGCGGCGTGGGCGGATGAGTTCGCCGAGTTCGCGGCGTCGCGGCGGGGCGCGCACCGCCGGTCGCTGAGCGACTCCGTGGCGTTCGTCGAGGTGGCGCCGGCGGGGTGCGGGGCGGGCGGCGAGTTCGACAGGCTCGACGACGACCAGCTCATGTCTATGTTCCCCGACGAGGGCGGGTCGTCGGCCCCGGGGTCCGACAACGGCGGCAGCGACAGCGACGGCGGCGGCGACAAGCACGCCGCGGCGCAGAGCGACGACGGGCAGCACGCCGCCGGGGAGCCGACGCAGGAGCAGGCGGCGGCCACCTCGCCGACGGAGCTGATCCGGGACCCCAAGAGGGTCAAGAGGATACTGGCTAATCGGCAGTCGGCCCAGAGGTCGCGAGTGAGGAAGCTTCAATACATCTCCGAGCTCGAGCGCAGCGTCACAACCCTGCAGAACGAGGTATCCGTGCTGTCCCCTCGGGTGGCGTTTCTGGATCAGTAGCGGACGATCCTGACCGTCGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGCTCATCAGGAGGCGTTGAGGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGAACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCACATGTCCATGGCGGCCCGCCGCCTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTGTGCAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTCTTCTTCTTC  TTCTTTTTGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCGGATGTTGATTGGAGTTCTGGTTTACAATGGGAATTGTGGGAGATGTCAATAAGAAAATGTGAACTGCAATAAG                                                          ]
[+] EMBL BE039847             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTTCTGGATCAGCAGCGGACGATCCTGACCGTCGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGCTCATCAGGAGGCGTTGAGGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGAACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCACATGTCCATGGCGGCCCGCCGCCTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTGTGCAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTCTTCTTCTTCTTTTTTTTTTGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCGGTTGTTGATTGGAGTTCTGGTTTACAATGGGAATTGTGGGAGATGTCAATAAGAAAATGTGAACTGCAATAAGATTAACTGTGATTTTTGAAAGCCNNAATTAATAATAATAAAAATATTTAAATTTAATT]
[+] EMBL CA756602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTTCTGGATCAGCAGCGGACGATCCTGACCGTCGGCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATGCTCATCAGGAGGCGTTGAGGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGAACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCACATGTCCATGGCGGCCCGCCGCCTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTGTGCAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTCTTCTTCTTC TTTTTTTTTGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCGGTTGTTGATTGGAGTTCTGGTTTACAATGGGAATTGTGGGAGATGTCAATAAGAAAATGTGAACTGCAATAAGATTAACTGTGATTTTTGAAAGCCNNAATTAATAATAATAAAAATATTTAAATTTAATT]


>consensus_4188#0 AACGCGCGCGCCAGAGCTAGGTGGTTAGCCCAAGCTCGCGAGATCGATCGCTACTATAGG CTAAGGACACGTACATGGCGCAGCTCCCGCCCAAGATCCCGGTGGCGGCGCCGGGGCACC ACCAGCACTGGGCCTCGGCCGGGGGCGCCGGCGACGCGGCGTGGGCGGATGAGTTCGCCG AGTTCGCGGCGTCGCGGCGGGGCGCGCACCGCCGGTCGCTGAGCGACTCCGTGGCGTTCG TCGAGGTGGCGCCGGCGGGGTGCGGGGCGGGCGGCGAGTTCGACAGGCTCGACGACGACC AGCTCATGTCTATGTTCCCCGACGAGGGCGGGTCGTCGGCCCCGGGGTCCGACAACGGCG GCAGCGACAGCGACGGCGGCGGCGACAAGCACGCCGCGGCGCAGAGCGACGACGGGCAGC ACGCCGCCGGGGAGCCGACGCAGGAGCAGGCGGCGGCCACCTCGCCGACGGAGCTGATCC GGGACCCCAAGAGGGTCAAGAGGATACTGGCTAATCGGCAGTCGGCCCAGAGGTCGCGAG TGAGGAAGCTTCAATACATCTCCGAGCTCGAGCGCAGCGTCACAACCCTGCAGAACGAGG TATCCGTGCTGTCCCCTCGGGTGGCGTTTCTGGATCAGCAGCGGACGATCCTGACCGTCG GCAACAGCCACCTCAAGCAGCGGATCGCGGCTCTAGCACAGGACAAGATTTTCAAGGATG CTCATCAGGAGGCGTTGAGGAAGGAGATCGAGAGGCTGAGGCAGGTATACCAGCAGCAGA ACACCAAGTTGTCCGGTGGTCTGGCCGCTGACCACGCACATGTCCATGGCGGCCCGCCGC CTGTGCGAGCAGAGAAGGAGCTCATGAGCTAGCTGATCAATTTGCCTACTGTCCCCTGTG CAGTCTGCCTTAGCATTAACTTTGGAGGGAACATTGCATCATGAACCTGTGGATGTTTTC TTCTTCTTCTTTTTTTTTGTTTTTTTATTCTTTTACATTGACTTGTGTATTCTTGATTCG GTTGTTGATTGGAGTTCTGGTTTACAATGGGAATTGTGGGAGATGTCAATAAGAAAATGT GAACTGCAATAAGATTAACTGTGATTTTTGAAAGCCNNAATTAATAATAATAAAAATATT TAAATTTAATT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)