cluster # 420

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Oryza sativa
cluster # 420 cluster # 420 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_420#0 length = 496 sequences # 1

consensus_420#1 length = 93 sequences # 1

consensusID : consensus_420#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTAAGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTGGATTGAAGTCTCAAACCGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACCCCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCATCGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCATGCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCCCATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGATGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCGCCCCCTTGTCTCGTCCT]

[+] EMBL CA762976             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTAAGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTGGATTGAAGTCTCAAACCGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACCCCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCATCGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCATGCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCCCATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGATGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCGCCCCCTTGTCTCGTCCT]




>consensus_420#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTA
AGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTGGATTGAAGTCTCAAACC
GCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACCC
CGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCATC
GTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCATG
CAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCCC
ATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGAT
GTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCGC
CCCCTTGTCTCGTCCT

consensusID : consensus_420#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence

                              [AAACCGATAAGAGTAATAATTGTATCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAATNCNGTTGAG]

[+] EMBL AA750908             [AAACCGATAAGAGTAATAATTGTATCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAATNCNGTTGAG]




>consensus_420#1
AAACCGATAAGAGTAATAATTGTATCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGT
GTCTTNTTGCTTGGGATATGTAATNCNGTTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_420#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTA 60
consensus_420#1      ----------------------------AAACCGATAAGAG-TAATAATT--GTATCTCG 29
                                                  ****   ** ** ********  ***  *  

consensus_420#0      AGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTG-GATTGAAGTCTCAAAC 119
consensus_420#1      GGATAATGC-AGT----GTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAAT 84
                      ** **  * ***     *  ***  * ** ***    * *   * ***   * *  ** 

consensus_420#0      CGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACC 179
consensus_420#1      NCNGTTGAG--------------------------------------------------- 93
                         **                                                      

consensus_420#0      CCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCAT 239
consensus_420#1      ------------------------------------------------------------
                                                                                 

consensus_420#0      CGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCAT 299
consensus_420#1      ------------------------------------------------------------
                                                                                 

consensus_420#0      GCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCC 359
consensus_420#1      ------------------------------------------------------------
                                                                                 

consensus_420#0      CATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGA 419
consensus_420#1      ------------------------------------------------------------
                                                                                 

consensus_420#0      TGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCG 479
consensus_420#1      ------------------------------------------------------------
                                                                                 

consensus_420#0      CCCCCTTGTCTCGTCCT 496
consensus_420#1      -----------------