These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTAAGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTGGATTGAAGTCTCAAACCGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACCCCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCATCGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCATGCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCCCATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGATGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCGCCCCCTTGTCTCGTCCT] [+] EMBL CA762976 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTAAGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTGGATTGAAGTCTCAAACCGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACCCCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCATCGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCATGCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCCCATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGATGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCGCCCCCTTGTCTCGTCCT] consensusID : consensus_420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [AAACCGATAAGAGTAATAATTGTATCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAATNCNGTTGAG] [+] EMBL AA750908 [AAACCGATAAGAGTAATAATTGTATCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAATNCNGTTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_420#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATCAACAGGTAATAATTTGGTAATTTA 60 consensus_420#1 ----------------------------AAACCGATAAGAG-TAATAATT--GTATCTCG 29 **** ** ** ******** *** * consensus_420#0 AGACAACCCTAGTACACATGGGATTAAGTCTAAAACAGCATTG-GATTGAAGTCTCAAAC 119 consensus_420#1 GGATAATGC-AGT----GTCAGATGTAATCCAAAGTGTCTTNTTGCTTGGGATATGTAAT 84 ** ** * *** * *** * ** *** * * * *** * * ** consensus_420#0 CGCATTACCACATATCCCAAGCTACAAGACACTTTGGATTACATCTGACACTGCATTACC 179 consensus_420#1 NCNGTTGAG--------------------------------------------------- 93 ** consensus_420#0 CCGAGCTACAATTATTACTCTCATCGATTTCAACTGGTTAAGGAAAACCCTAATGCTCAT 239 consensus_420#1 ------------------------------------------------------------ consensus_420#0 CGTCTTTTTTTTGTTTATCCATGGGGGCACGCAGCTATCGATCATGGCGAGAGCATGCAT 299 consensus_420#1 ------------------------------------------------------------ consensus_420#0 GCAGCTTAATTATTAGCAATGGAGCTCAGCTTCATCAAAGGGGGTTGAAGACAATCCCCC 359 consensus_420#1 ------------------------------------------------------------ consensus_420#0 CATGCGCGGAAAAAAAGGGCGCGAAAACAAGCGCCTCGACGGCCATGAGCTTGACAAGGA 419 consensus_420#1 ------------------------------------------------------------ consensus_420#0 TGTTGAGCGATGGCCCCGAGGTGTCCTTGAGCGGGTCGCCCATGGTGTCTCCAATCACCG 479 consensus_420#1 ------------------------------------------------------------ consensus_420#0 CCCCCTTGTCTCGTCCT 496 consensus_420#1 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||