These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1250 fasta sequence [AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGATGTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCAAAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA] [+] EMBL AK059224 [AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGATGTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCAAAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA] consensusID : consensus_4200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [CTGAAGGAGTAGAAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATC] [+] EMBL CF314408 [CTGAAGGAGTAGAAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATC] consensusID : consensus_4200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [AATTTTTATGAGGAAATTAACGCGGCTGTTCAAAGCGCCTCTCTAAGATCCAGTCGGAATATGATTCTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATACACTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA] [+] EMBL BI813726 [AATTTTTATGAGGAAATTAACGCGGCTGTTCAAAGCGCCTCTCTAAGATCCAGTCGGAATATGATTCTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATACACTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4200#0 AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGAT 60 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 GTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAA 120 consensus_4200#1 ---------------------------------------------CTGAAGGAGTAGAAA 15 consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 TCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAA 180 consensus_4200#1 TCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAA 75 consensus_4200#2 ----------------------------------------------------------AA 2 ** consensus_4200#0 TTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGAT 240 consensus_4200#1 TTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGAT 135 consensus_4200#2 TTTTTATGAGGAAAT-TAACGCGGCTGTTCAAAGCGCCTCTCTAAGA-------TCCAGT 54 ***** * ** ** * * * ** * * * * * * * consensus_4200#0 TGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCT 300 consensus_4200#1 TGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCT 195 consensus_4200#2 CGGAATAT-GATTCTTGCTGGCC-CGTCT---CAATTCAGGAAGTTTTGTAGAGAAGGCC 109 ** **** ** * ** * * ***** * * ** ** * * ** * consensus_4200#0 ATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTC 360 consensus_4200#1 ATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTC 255 consensus_4200#2 CCAGAAGAAATTGTTC-GTGGAGTTCGTGAGAAAGCAT-CAGAAGCAGAAGAGAAGATCT 167 * * *** ***** ** * * ** **** *** * ***** * * consensus_4200#0 ATGCCCTTTGTCACTGAAGAGTTATG--GCAGGCATTGCCATACAGA-AAACAAGCAATT 417 consensus_4200#1 ATGCCCTTTGTCACTGAAGAGTTATG--GCAGGCATTGCCATACAGA-AAACAAGCAATT 312 consensus_4200#2 CCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTC 227 * * * * * * **** ** ** ** * * ** * consensus_4200#0 ATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTT 477 consensus_4200#1 ATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTT 372 consensus_4200#2 ACCATTGACGGT--GTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGA 285 * *** * * * * **** *** **** * * * * consensus_4200#0 CAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAG 537 consensus_4200#1 CAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAG 432 consensus_4200#2 CGAGAGATGCCACTTCCGGATATAAAT---TGGCGTGTCAGAGTAGTGAGTGCCATT--- 339 * * *** * * * * * * *** *** ** * * * ** consensus_4200#0 CCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCG 597 consensus_4200#1 CCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCG 492 consensus_4200#2 CCATTTTCGCGTGTGCCAGGAC--ATTGCAACTGGTGCACGCATCTTAC-CGATAAGTTC 396 *** *** * * * *** *** *** ** ** * * * consensus_4200#0 AAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCA-GAGTATACATTTTAG 656 consensus_4200#1 AAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCA-GAGTATACATTTTAG 551 consensus_4200#2 TACTATATACA---CTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAA 453 * * * ** * * *** ** ** * * ** * * * * * ** ** consensus_4200#0 CGAGTTGCCGCCAGGTG-ATGCAAATC-AGTCGGTCCACATTGTTGCTGATGAGGGTCTG 714 consensus_4200#1 CGAGTTGCCGCCAGGTG-ATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTG 610 consensus_4200#2 CGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA- 512 ** * * * *** ** * * ***** * * consensus_4200#0 GAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCA 774 consensus_4200#1 GAGGCCTATC-------------------------------------------------- 620 consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 AAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGA 834 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 AGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAA 894 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 GCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCA 954 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 AGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGAT 1014 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 TAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTG 1074 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 AGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATA 1134 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 AGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTT 1194 consensus_4200#1 ------------------------------------------------------------ consensus_4200#2 ------------------------------------------------------------ consensus_4200#0 GTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA 1250 consensus_4200#1 -------------------------------------------------------- consensus_4200#2 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||