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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4200#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1250 fasta sequence
[AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGATGTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCAAAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA]
[+] EMBL AK059224 [AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGATGTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCAAAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA]
consensusID : consensus_4200#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[CTGAAGGAGTAGAAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATC]
[+] EMBL CF314408 [CTGAAGGAGTAGAAATCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAATTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGATTGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCTATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTCATGCCCTTTGTCACTGAAGAGTTATGGCAGGCATTGCCATACAGAAAACAAGCAATTATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTTCAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAGCCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCGAAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCAGAGTATACATTTTAGCGAGTTGCCGCCAGGTGATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTGGAGGCCTATC]
consensusID : consensus_4200#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[AATTTTTATGAGGAAATTAACGCGGCTGTTCAAAGCGCCTCTCTAAGATCCAGTCGGAATATGATTCTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATACACTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA]
[+] EMBL BI813726 [AATTTTTATGAGGAAATTAACGCGGCTGTTCAAAGCGCCTCTCTAAGATCCAGTCGGAATATGATTCTTGCTGGCCCGTCTCAATTCAGGAAGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAAGCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTGAGTGCCATTCCATTTTCGCGTGTGCCAGGACATTGCAACTGGTGCACGCATCTTACCGATAAGTTCTACTATATACACTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAACGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4200#0 AATGCAGGCAAATTTTTGTTGCAGAATTTGCCTGATAGAAGTGATGCCACTGCATGGGAT 60
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 GTCTTGTTAGCAAATAAGTTTGATACAGAAGCGTCACTTCAGAAACTACCACTGCCAGAA 120
consensus_4200#1 ---------------------------------------------CTGAAGGAGTAGAAA 15
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 TCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAA 180
consensus_4200#1 TCCTGGGTGGTGACAGGATTACACGAACTCATCGATAGGGTCAGCACAAGCTACGACAAA 75
consensus_4200#2 ----------------------------------------------------------AA 2
**
consensus_4200#0 TTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGAT 240
consensus_4200#1 TTTTTCTTTGGCGATGCAGCTAGAGAAATCTACGATTTCTTTTGGGGGGACTTTGCTGAT 135
consensus_4200#2 TTTTTATGAGGAAAT-TAACGCGGCTGTTCAAAGCGCCTCTCTAAGA-------TCCAGT 54
***** * ** ** * * * ** * * * * * * *
consensus_4200#0 TGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCT 300
consensus_4200#1 TGGTATATTGAAGCCAGCAAGACACGTCTTTACCACTCTGGTGATGATTCAGCTTCTTCT 195
consensus_4200#2 CGGAATAT-GATTCTTGCTGGCC-CGTCT---CAATTCAGGAAGTTTTGTAGAGAAGGCC 109
** **** ** * ** * * ***** * * ** ** * * ** *
consensus_4200#0 ATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTC 360
consensus_4200#1 ATGGCACAAAGTGTTCTGTTGTATGTGTTTGAAAACATACTGAAGCTATTGCACCCCTTC 255
consensus_4200#2 CCAGAAGAAATTGTTC-GTGGAGTTCGTGAGAAAGCAT-CAGAAGCAGAAGAGAAGATCT 167
* * *** ***** ** * * ** **** *** * ***** * *
consensus_4200#0 ATGCCCTTTGTCACTGAAGAGTTATG--GCAGGCATTGCCATACAGA-AAACAAGCAATT 417
consensus_4200#1 ATGCCCTTTGTCACTGAAGAGTTATG--GCAGGCATTGCCATACAGA-AAACAAGCAATT 312
consensus_4200#2 CCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCAAGTTAGATTCACAGTC 227
* * * * * * **** ** ** ** * * ** *
consensus_4200#0 ATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTT 477
consensus_4200#1 ATTGTTGCCCACTGGCCTGCGACTGATCTCCCTAAGAATTCTCTCTCGATCAAGAGATTT 372
consensus_4200#2 ACCATTGACGGT--GTCAACCTGCCATCTAAATAACAATTTTGATTAGTCCTGATTTGGA 285
* *** * * * * **** *** **** * * * *
consensus_4200#0 CAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAG 537
consensus_4200#1 CAGAATTTGCAATCGTTGATAAGAGGTATCAGAAATGTTCGAGCAGAGTATTCTGTTGAG 432
consensus_4200#2 CGAGAGATGCCACTTCCGGATATAAAT---TGGCGTGTCAGAGTAGTGAGTGCCATT--- 339
* * *** * * * * * * *** *** ** * * * **
consensus_4200#0 CCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCG 597
consensus_4200#1 CCAGCCAAGCGAATATCTTCATCAGTTGTTGCTGCCGCAGATGTCCTAGATTACATATCG 492
consensus_4200#2 CCATTTTCGCGTGTGCCAGGAC--ATTGCAACTGGTGCACGCATCTTAC-CGATAAGTTC 396
*** *** * * * *** *** *** ** ** * * *
consensus_4200#0 AAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCA-GAGTATACATTTTAG 656
consensus_4200#1 AAGGAGAAGCAGGTCCTGGCTTTACTTTCAAAGCTTGACATGCA-GAGTATACATTTTAG 551
consensus_4200#2 TACTATATACA---CTCATTTATACGTTACTAGGTATGCCTGTACGCCTGTGCGTTGTAA 453
* * * ** * * *** ** ** * * ** * * * * * ** **
consensus_4200#0 CGAGTTGCCGCCAGGTG-ATGCAAATC-AGTCGGTCCACATTGTTGCTGATGAGGGTCTG 714
consensus_4200#1 CGAGTTGCCGCCAGGTG-ATGCAAATNCAGTCGGTCCACATTGTTGCTGATGAGGGTCTG 610
consensus_4200#2 CGGGACATAGTTGTACATACATAAACATGAATGGAATAAACAGTTGCACAAAAAAAAAA- 512
** * * * *** ** * * ***** * *
consensus_4200#0 GAGGCCTATCTACCCCTGGCTGACATGGTGGATGTTTCTGAGGAAGTTAAGCGGCTGTCA 774
consensus_4200#1 GAGGCCTATC-------------------------------------------------- 620
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 AAGCGCCTCTCTAAGATGCAGTCGGAATATGATTCTTTGCTGGCCCGTCTCAATTCAGGA 834
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 AGTTTTGTAGAGAAGGCCCCAGAAGAAATTGTTCGTGGAGTTCGTGAGAAAGCATCAGAA 894
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 GCAGAAGAGAAGATCTCCCTCACCAAGAATCGGCTCGCTTTCCTGCAGTCAACAGTATCA 954
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 AGTTAGATTCAGCAGTCACCATTGACGGTGTCAACCTGCCATCTAAATAACAATTTTGAT 1014
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 TAGTCCTGATTTGGACGAGAGATGCCACTTCCGGATATAAATTGGCGTGTCAGAGTAGTG 1074
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 AGTGCCATTCCATTTTCGCGTGTGCAGGACATTGCAACTGGTGCACGCATCTTACCGATA 1134
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 AGTTCTACTATATAACACTCATTTATACGTCTACTAGGTATGCCTGTACGCCTGTGCGTT 1194
consensus_4200#1 ------------------------------------------------------------
consensus_4200#2 ------------------------------------------------------------
consensus_4200#0 GTAACGGGACAATAGTTGTACATACATAAACAATACATAAACAATGAATGGAATAA 1250
consensus_4200#1 --------------------------------------------------------
consensus_4200#2 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||