These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2204 fasta sequence [CTAGTCAAGATTACCTGGCACACTCAGAAATGTACCACCAACATGTCAGTAATAAAAACAGCCTCTAGGAACTAAGATCTCGACTTAGGCACCTCCCACTTCTAACTAGACACTCCAATGGAAACTATTAGCAATATCTTTCACAATGACCCACTCCCACCTCTAGGAGCAAGAGCAAACCAATCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCATATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTTGCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTAGTGGATGATCCAAAAAGGATCGTGGCTAGGTTACTTAGCATGCTTCGATTATGGCGTCTCCGGCGCCTCAGTGAATTATTTGCCAGGCTCGAAAAGGATATCCGATTGAATTACTACTGGATAAGGTGCACCAAACTAATTTCTGTTACACTTTTTGCGGTACATTGTTCAGGATGCTTCAATTATTTAATAGCTGATAGATACCCCAATCCAGCAAGAACATGGATAGGAGCAGCAATACCAAACTACAGATCACAAAATCTGTGGGTTCGATATGTTACGGCAATTTATTGGTCCATAACAACACTCACAACAACTGGTTATGGGGATTTGCATGCAGAGAATCAAAGAGAAATGTTATTTAGCATATGCTACATGCTATTTAACCTGGGATTGACAGCATACCTCATAGGTAACATGACAAATCTGGTTGTTCAGGGAAGTTGCCGGACCAGGAATTTTAGGGACACAATCCATGCTGCCTCTCAGTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGACGAAATGCTATCTCATATCTGCCTAAGATATAAAACAGAGGGGCTGAAACAGAAAGAAACATTGGATAGTCTCCCCAAGGGAATCCGTTCAAGCATAGCGTGCAACTTATTCTTACCTGTTATAGAAAAAGTCTATCTTTTCCATGGTGTCTCATTTACTTGCATGATCCAACTGGTAACTGAAATGGAAGCAGAGTACTACCCACCAAGAGAAGTTGTCATACTCCAAAATGAAGCACCCCGAGATGTTTACATATTAGTTTCGGGAGCAGTGGAAGAGCGGGTAGAGATCGATGGAACAGAAAAGGTCCAGGAAGTACTGTGCAATGGTGAAATATTTGGAGAAATAGGAGTTATCTGCAGCATCCCCCAGCCATGTGCTTTCCATACAATCAAAGTTTCACAACTATTAAGGCTGAACACAGCAGTGCTAAAGAACATTATCAAGGAAAACAGCGATGACAGACGAGTTATTCTGAACAATCTTTCCCAGAAGATGAACCAAGATCACAGGTTCTCTACCGAGGTGATGGAAAAATCTTTACAGATGATGCATCAACACTTTGGAGAGTACAACAGATGTTCTGCATTGAATCAAGACAATGAGAAGAATGAATTAAAAGCTAATAATGGTCATTCTATGGCTTTAGAATGGAAAAGAGTGACAATACATATGTATTCACAGAGGAACAAAAGACCGGAGGCACCGCTTGCAAAAGTTATAAATCTACCAGGATCTCTTGATAAACTTTTCGCCATAGCTTGTCAGAAGTTTAACAATTATCGTCTTACAAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTACAGTAATTCGAGATGGTGATCATCTGTTTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGAACTGCAGATAGGTATGTAGTATACCTTTCAGAAGGTACCAGATTAAGATAATAGTGATCACTAATCAGGCATGAGGCGACTTGGCATGATAATCAAGAACATGCCACCTAGGGATGTTTCGAGTTGCAGTCCTGTAGTTACATCTAATTTTACTTTAGAATGTAAATGTAGAATTTTGGAGCAATGTAGTCTCTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTCTATGATCTGTGGAGTTTGTAATGTAGCTATAGTGCAACGAAAGATACTAATATCGTTTACAGGTACTTTATAGTGTTTCTCCAAGTTTTTTTTGAAATAAATGATGAA] [+] EMBL AK065938 [CTAGTCAAGATTACCTGGCACACTCAGAAATGTACCACCAACATGTCAGTAATAAAAACAGCCTCTAGGAACTAAGATCTCGACTTAGGCACCTCCCACTTCTAACTAGACACTCCAATGGAAACTATTAGCAATATCTTTCACAATGACCCACTCCCACCTCTAGGAGCAAGAGCAAACCAATCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCATATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTTGCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTAGTGGATGATCCAAAAAGGATCGTGGCTAGGTTACTTAGCATGCTTCGATTATGGCGTCTCCGGCGCCTCAGTGAATTATTTGCCAGGCTCGAAAAGGATATCCGATTGAATTACTACTGGATAAGGTGCACCAAACTAATTTCTGTTACACTTTTTGCGGTACATTGTTCAGGATGCTTCAATTATTTAATAGCTGATAGATACCCCAATCCAGCAAGAACATGGATAGGAGCAGCAATACCAAACTACAGATCACAAAATCTGTGGGTTCGATATGTTACGGCAATTTATTGGTCCATAACAACACTCACAACAACTGGTTATGGGGATTTGCATGCAGAGAATCAAAGAGAAATGTTATTTAGCATATGCTACATGCTATTTAACCTGGGATTGACAGCATACCTCATAGGTAACATGACAAATCTGGTTGTTCAGGGAAGTTGCCGGACCAGGAATTTTAGGGACACAATCCATGCTGCCTCTCAGTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGACGAAATGCTATCTCATATCTGCCTAAGATATAAAACAGAGGGGCTGAAACAGAAAGAAACATTGGATAGTCTCCCCAAGGGAATCCGTTCAAGCATAGCGTGCAACTTATTCTTACCTGTTATAGAAAAAGTCTATCTTTTCCATGGTGTCTCATTTACTTGCATGATCCAACTGGTAACTGAAATGGAAGCAGAGTACTACCCACCAAGAGAAGTTGTCATACTCCAAAATGAAGCACCCCGAGATGTTTACATATTAGTTTCGGGAGCAGTGGAAGAGCGGGTAGAGATCGATGGAACAGAAAAGGTCCAGGAAGTACTGTGCAATGGTGAAATATTTGGAGAAATAGGAGTTATCTGCAGCATCCCCCAGCCATGTGCTTTCCATACAATCAAAGTTTCACAACTATTAAGGCTGAACACAGCAGTGCTAAAGAACATTATCAAGGAAAACAGCGATGACAGACGAGTTATTCTGAACAATCTTTCCCAGAAGATGAACCAAGATCACAGGTTCTCTACCGAGGTGATGGAAAAATCTTTACAGATGATGCATCAACACTTTGGAGAGTACAACAGATGTTCTGCATTGAATCAAGACAATGAGAAGAATGAATTAAAAGCTAATAATGGTCATTCTATGGCTTTAGAATGGAAAAGAGTGACAATACATATGTATTCACAGAGGAACAAAAGACCGGAGGCACCGCTTGCAAAAGTTATAAATCTACCAGGATCTCTTGATAAACTTTTCGCCATAGCTTGTCAGAAGTTTAACAATTATCGTCTTACAAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTACAGTAATTCGAGATGGTGATCATCTGTTTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGAACTGCAGATAGGTATGTAGTATACCTTTCAGAAGGTACCAGATTAAGATAATAGTGATCACTAATCAGGCATGAGGCGACTTGGCATGATAATCAAGAACATGCCACCTAGGGATGTTTCGAGTTGCAGTCCTGTAGTTACATCTAATTTTACTTTAGAATGTAAATGTAGAATTTTGGAGCAATGTAGTCTCTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTCTATGATCTGTGGAGTTTGTAATGTAGCTATAGTGCAACGAAAGATACTAATATCGTTTACAGGTACTTTATAGTGTTTCTCCAAGTTTTTTTTGAAATAAATGATGAA] [-] EMBL CB680975 [ ATCAACCCTTTGGAGAGTACAACAGATGTTTTGCATTGAATCAAGCCAATGAGAAGAATGAATTAAAAGCTAATAATGGTCATTTTATGGCTTTAGAATGGAAAAGAGTGCCAATACATATGTATTCCCAGAGGAACAAAAGACCGGAGGCCCCGCTTGCAAAAGTTATAAATTTTCCAGGATTTTTTGATAAACTTTTTGCCATAGCTTGTCAGAAGTTTAACAATTATTTTTTTACAAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTCCAGTAATTCGGGATGGGGATCATTTG TTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGAACTGCAGATAGGTATGTAGTATCCCTTTCAGAAGGTCCCAGATTAAGATAATAGTGATCCCTAATCAGGCATGAGGGGACTTGGCATGATAATCAAGAACATGCCCCCTAGGGATGTTTTGAGTTGCAGTCCTGTAGTTACATTTAATTTTTCTTTAGAATGTAAATGTAGAATTTTGGAGCAATGTAGTTTTTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTTTATGATTTGTGGAGTTTGTAATGTAGCTATAGTGCAACGAAAGATATTAATATCGTTTcc ] consensusID : consensus_4204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [AAGAGCAAACCAATCTATCAAGCTGAGAAAATCCCTTATTTCTCCATATGATTCCCGTTACAGGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCATATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTTGCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTATTGTATGATCCAAAAAGGATCGTGGCTAGAGGGACACAATCCATGCTGCCTCTCATTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGACGAAATGCTATCTCATATCTGCCTAAGATATAAAACAGAGGGGCTGAAACAGAAAGAAACATTGGATAGTCTCCCCAAGGGAATCCGTTCAAGCATACCGTGCAACTTATTCTTACCTGTTATAGAAAAAGTCTATCTTTTCCATGGTGTCTCATTTACTTGCATGATCCAACTGGTAA] [+] EMBL CB680974 [AAGAGCAAACCAATCTATCAAGCTGAGAAAATCCCTTATTTCTCCATATGATTCCCGTTACAGGACCTGGGAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCATATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTTGCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTATTGTATGATCCAAAAAGGATCGTGGCTAGAGGGACACAATCCATGCTGCCTCTCATTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGACGAAATGCTATCTCATATCTGCCTAAGATATAAAACAGAGGGGCTGAAACAGAAAGAAACATTGGATAGTCTCCCCAAGGGAATCCGTTCAAGCATACCGTGCAACTTATTCTTACCTGTTATAGAAAAAGTCTATCTTTTCCATGGTGTCTCATTTACTTGCATGATCCAACTGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4204#0 CTAGTCAAGATTACCTGGCACACTCAGAAATGTACCACCAACATGTCAGTAATAAAAACA 60 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GCCTCTAGGAACTAAGATCTCGACTTAGGCACCTCCCACTTCTAACTAGACACTCCAATG 120 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GAAACTATTAGCAATATCTTTCACAATGACCCACTCCCACCTCTAGGAGCAAGAGCAAAC 180 consensus_4204#1 --------------------------------------------------AAGAGCAAAC 10 ********** consensus_4204#0 CAATCTATCAAGCTGAGAAAATTCATTATTTCTCCATATGATTCCCGTTACAGGACCTGG 240 consensus_4204#1 CAATCTATCAAGCTGAGAAAATCCCTTATTTCTCCATATGATTCCCGTTACAGGACCTGG 70 ********************** * *********************************** consensus_4204#0 GAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCA 300 consensus_4204#1 GAGACGTTCTTGCTCGTGCTTGTTGTTTATTCAGCTTGGATCTGCCCATTTGAACTAGCA 130 ************************************************************ consensus_4204#0 TATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTT 360 consensus_4204#1 TATCTGAGAAATCTCTCCTGGAAGGTTTCTCTTGTTGACAATATTATTGACAGCTTCTTT 190 ************************************************************ consensus_4204#0 GCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTA 420 consensus_4204#1 GCAATCGATATTATTCTCACATTTTTTCTAGCGTATCTGGATCAAAAGTCATATCTTCTA 250 ************************************************************ consensus_4204#0 GTGGATGATCCAAAAAGGATCGTGGCTAGGTTACTTAGCATGCTTCGATTATGGCGTCTC 480 consensus_4204#1 TTGTATGATCCAAAAAGGATCGTGGCTAGAG----GGACACAATCC-ATGCTGCCTCTCA 305 ** ************************* ** * * ** ** * consensus_4204#0 CGGCGCCTCAGTGAATTATTTGCCAGG-CTCGAAAAGGATATCCGATTGAATTACTACTG 539 consensus_4204#1 TTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGAC--------GAAATGCTATCT 357 ** ** *** * ***** ** * ***** *** * *** consensus_4204#0 GATAAGGTGCACCAAACTAATTTCTGTTACACTTTTTGCGGTACATTGTTCAGGATGCTT 599 consensus_4204#1 CATA-------TCTGCCTAAGATATAAAACA------GAGGGGC-TGAAACAGAAAGAAA 403 *** * **** * * *** * ** * * *** * * consensus_4204#0 CAATTATTTAATAGCTGATAGATACCCCAATCCAGCAAGAACATGGATAGGAGCAGCAAT 659 consensus_4204#1 CA-TTGGATAGTCTCCCCAAGGGAATCCGTTCAAGCAT-ACCGTGCA-------ACTTAT 454 ** ** ** * * ** * ** ** **** * * ** * * ** consensus_4204#0 ACCAAACTACAGATCACAAAATCTGTGGGTTCGATATGTTACGGCAATTTATTGGTCCAT 719 consensus_4204#1 TCTTACCTGTTATAGAAAAAGTCTATCTTTTC--CATGGTGTCTCATTTACTTG---CAT 509 * * ** * *** *** * *** *** * ** ** *** *** consensus_4204#0 AACAACACTCACAACAACTGGTTATGGGGATTTGCATGCAGAGAATCAAAGAGAAATGTT 779 consensus_4204#1 GATCCAACTGGTAA---------------------------------------------- 523 * *** ** consensus_4204#0 ATTTAGCATATGCTACATGCTATTTAACCTGGGATTGACAGCATACCTCATAGGTAACAT 839 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GACAAATCTGGTTGTTCAGGGAAGTTGCCGGACCAGGAATTTTAGGGACACAATCCATGC 899 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TGCCTCTCAGTTTGCTGCAAGAAATCAGTTGCCTGGACATATTAAGGACGAAATGCTATC 959 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TCATATCTGCCTAAGATATAAAACAGAGGGGCTGAAACAGAAAGAAACATTGGATAGTCT 1019 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 CCCCAAGGGAATCCGTTCAAGCATAGCGTGCAACTTATTCTTACCTGTTATAGAAAAAGT 1079 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 CTATCTTTTCCATGGTGTCTCATTTACTTGCATGATCCAACTGGTAACTGAAATGGAAGC 1139 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 AGAGTACTACCCACCAAGAGAAGTTGTCATACTCCAAAATGAAGCACCCCGAGATGTTTA 1199 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 CATATTAGTTTCGGGAGCAGTGGAAGAGCGGGTAGAGATCGATGGAACAGAAAAGGTCCA 1259 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GGAAGTACTGTGCAATGGTGAAATATTTGGAGAAATAGGAGTTATCTGCAGCATCCCCCA 1319 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GCCATGTGCTTTCCATACAATCAAAGTTTCACAACTATTAAGGCTGAACACAGCAGTGCT 1379 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 AAAGAACATTATCAAGGAAAACAGCGATGACAGACGAGTTATTCTGAACAATCTTTCCCA 1439 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GAAGATGAACCAAGATCACAGGTTCTCTACCGAGGTGATGGAAAAATCTTTACAGATGAT 1499 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GCATCAACACTTTGGAGAGTACAACAGATGTTCTGCATTGAATCAAGACAATGAGAAGAA 1559 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TGAATTAAAAGCTAATAATGGTCATTCTATGGCTTTAGAATGGAAAAGAGTGACAATACA 1619 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TATGTATTCACAGAGGAACAAAAGACCGGAGGCACCGCTTGCAAAAGTTATAAATCTACC 1679 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 AGGATCTCTTGATAAACTTTTCGCCATAGCTTGTCAGAAGTTTAACAATTATCGTCTTAC 1739 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 AAAACTTGTCAATCCAGAATTTGCTGAAATTGATGATATTACAGTAATTCGAGATGGTGA 1799 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TCATCTGTTTTTTTATGGAAATTTGAATAAGGATGCTTGAAATCAGCAACGATGCAAAGA 1859 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 ACTGCAGATAGGTATGTAGTATACCTTTCAGAAGGTACCAGATTAAGATAATAGTGATCA 1919 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 CTAATCAGGCATGAGGCGACTTGGCATGATAATCAAGAACATGCCACCTAGGGATGTTTC 1979 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GAGTTGCAGTCCTGTAGTTACATCTAATTTTACTTTAGAATGTAAATGTAGAATTTTGGA 2039 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GCAATGTAGTCTCTATTCCGCTTTCAAAATGTTGGATCATGGCAGAGGGCAGCCCTCTAT 2099 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 GATCTGTGGAGTTTGTAATGTAGCTATAGTGCAACGAAAGATACTAATATCGTTTACAGG 2159 consensus_4204#1 ------------------------------------------------------------ consensus_4204#0 TACTTTATAGTGTTTCTCCAAGTTTTTTTTGAAATAAATGATGAA 2204 consensus_4204#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||