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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_421#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1133 fasta sequence
[ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCTTCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGCCGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGCAGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTGCTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATGGTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTGCTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTTCTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACCTTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATTGCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTATATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCTTTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC]
[+] EMBL AK059790 [ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCTTCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGCCGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGCAGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTGCTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATGGTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTGCTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTTCTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACCTTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATTGCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTATATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCTTTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC]
consensusID : consensus_421#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[TAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGGTTATTCCGGTGTCATTGATTTATCGCATTGATATTCTCTTGACAGCTTTTCATATATCCTGGCAGAGTCGGTTTGCTAGTATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTGTCTTGATAATTGATATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGTTAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAAACAATAAGGCAGACAGTTCGCTCATATTTCATAGCAAACCTAAGGATAGTAGGAATCAACTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTGAATTTTTCAGATTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA]
[-] EMBL CB650436 [TAGGGCCTATGTTCTATGCTTTGTGGAGTTCAGTGATGCAAAATGTGCAATAACTGCTATGGAGGCTCTCCAAGGTTATTCCGGTGTCATTGATTTATCGCATTGATATTCTCTTGACAGCTTTTCATATATCCTGGCAGAGTCGGTTTGCTAGTATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTGTCTTGATAATTGATATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGTTAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAAACAATAAGGCAGACAGTTCGCTCATATTTCATAGCAAACCTAAGGATAGTAGGAATCAACTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTGAATTTTTCAGATTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATATCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCCTTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTGACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTAGCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGCTAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_421#0 ATACTCCAGTATAGGTTTCTAACTCTGCGTCGCACGCAGCAAGGGCCGAAGGCCGCATCT 60
consensus_421#1 ------------------------------------------------------------
consensus_421#0 TCGCCGTCCCCAACTCCTTCCACCGCGACTTCGCCGCCGTCCACGGTCCGCCCTCGCCGC 120
consensus_421#1 ------------------------------------------------------------
consensus_421#0 CGTCGATGGCCGATCCCTACCGCGCTTACGCCCCTCCCTCCTCTCTCGGCCGAGATCCGC 180
consensus_421#1 ------------------------------------------------------------
consensus_421#0 AGGGTGATTTTCCTAGGCATCCTCCATCCGAGGGCTCTTATTATGCTTCAAGAATGGCTG 240
consensus_421#1 ------------------------------------------------------------
consensus_421#0 CTCTCCATGGAACATCAGATATACTTAGACATGATGTACCATTACAGCCAAGAGCTTATG 300
consensus_421#1 ------------------------------------------------------------
consensus_421#0 GTTTGGATGGTGCAGCAGGAGCAAGTCATCCTGCTTTGGCTGGTCTTGGTGGACTGGCTG 360
consensus_421#1 ---------------TAGGGCCTATGTTCTATGCTTTGTGGAGT-TCAGTGATGCAAAAT 44
*** * * ******* ** * ***
consensus_421#0 CTGGAACTACAGCTCGGGGGCCTAGTCCACTGGAAGACCCAGCTTTAGTAAGGAGAAGTT 420
consensus_421#1 GTGCAATAACTGCTATGGAGGCTCTCCAA--GGTTATTCCGGTGTCATTGATTTA----T 98
** ** ** *** ** * ** * * ** ** * * * * * *
consensus_421#0 CTTCTCTAGGAAAAACTGCTAGTATTCCAGATGTTGAGCATCCCAGACCCCTTCTGAACC 480
consensus_421#1 CGCATTGATATTCTCTTGACAGCTTTTCATATAT----CCTGGCAGAGTCGGTTTGCTAG 154
* * * ** ** ** ** ** * * * **** * * **
consensus_421#0 TTGATGGTCCAAGAGAAGATGAATCCAACATTCTCTTTGTTGATGGTCTCCCTACTGATT 540
consensus_421#1 TATGGGATTATAATCATGTTACATTACATATAGAATTGAATGGTG-TCTTGATAATTGAT 213
* * * * * * * ** * ** ** ** ** *** ** * *
consensus_421#0 GCACAAGGAGAGAAGTGGCCCGTATCCTTCCTACTTAGTGTTCTTATGCTCTGTGTTTAT 600
consensus_421#1 ATGCATGGTATCCATTGGCTTTTTTTCTTTCAGTAGTATTTCACAGTTCACAGTGTCTGT 273
** ** * **** * * *** * * * * * * **** * *
consensus_421#0 ATCTCTTTCTTAGTTTCCTTTCGTGAGCCTTAACTTCCCATGGAAGATTTGTTCCGTCCT 660
consensus_421#1 TAGATTCTTGTGACACACTGATACTAACCATATCTTCCTTCAAGAGCTGTAGCTATTTAA 333
* * * ** * ** ** ***** ** * * *
consensus_421#0 TTTGTTGGCTTCAAGGACATCAGACTAGTGCATAAGGAGCCAAGACATAGTAGTGATAGG 720
consensus_421#1 ACAATAAGGCAGACAGTTCGCTCA-TATTTCATAGCAAACCTAAGGATAGTAGGAATCAA 392
* * * * * * ** * **** * ** * ******* **
consensus_421#0 GCCTATGTTCTATGCTTTGTGGAG-----TTCAGTGATGCAAAATGTGCAATAACTGCTA 775
consensus_421#1 CTTTAAACCTAAGGCTGTAACATGAGCTTTTCTTTGTTGCATAAGCTG-AATTTTTCAGA 451
** * *** * * *** ** **** ** ** *** * *
consensus_421#0 TGGAGGCTCTCCAAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATA 835
consensus_421#1 TTATTGATTTTGCAGAATACCGCTTCGACGAGAGGAAACCCGACGCCGCTGTTCTTAATA 511
* * * * ***********************************************
consensus_421#0 TCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCC 895
consensus_421#1 TCAAGTTTGCAAGGTTCCCTTTCCGGCCGGCCGCTGCCCCCCATGATGATCGGAGACGCC 571
************************************************************
consensus_421#0 TTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTG 955
consensus_421#1 TTACCTTGCACTGATTAGTTCCTAACTTCCTATCATCCTTAGTTAGCTGTGCCCAACCTG 631
************************************************************
consensus_421#0 ACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTA 1015
consensus_421#1 ACCTTATCATTGCAACTTGTAAATCTTGTACCATCTCTGTCCCATAATACAAGGGATTTA 691
************************************************************
consensus_421#0 GCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGC 1075
consensus_421#1 GCTCAATCCTTTATATTCTGTGATGGAGGTAGTAACAACCTGTTGTCAGTCGAAACTGGC 751
************************************************************
consensus_421#0 TAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGAAACAC 1133
consensus_421#1 TAGCAGGAATCTTGAACAGCAGCAAAACAAGGAATGTACATTTGTGGGTTCGA----- 804
*****************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||