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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1213 fasta sequence
[AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA]
[+] EMBL AK073680 [AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTGCTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCAAATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCATAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGATAGCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCTACGAGTATCTGTTTGACTCTCTAAGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTCCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGTAACAAAGCAAGGTGAA]
consensusID : consensus_4211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1047 fasta sequence
[CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA]
[+] EMBL CA755537 [CGGCGCGCGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGTTCTCTTGTC ]
[+] EMBL AK059950 [ CGAGGCTGCTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCACGGATTCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGTGCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACGAGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGGTTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCAAATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCAGAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCAGCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTTACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGCACCTGCAATGCTTCCACGAGATGCTGAAGCACGACAAGTTCTCTTGTCCCATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTCTCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTTCATATAAAATTCAGCTGCAGATGCTGTCAGCACCGCAGCATCATATTATTGATTTATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTTCAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAATTATACACGTTTTATGTAACAAAGCAAGGTGAATTTGAAAGGCGAAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4211#0 AAAATAGTAGTCGTCCCCTTCTTGGCGCGCCGCCGCAGCAACAGCTGGCGCGCGAGGCTG 60
consensus_4211#1 ---------------------------------------------CGGCGCGCGAGGCTG 15
**************
consensus_4211#0 CTCGGATCTATCCGCGGCCGTGGAACCGATGGAGCTCGACGACGCGTCTCGCCACTGGAT 120
consensus_4211#1 CTCGGATCTCGCCGCGGCCATCGAACCGATGGAGCTCGACGACGCGTCTCGCCAC-GGAT 74
********* ******** * ********************************* ****
consensus_4211#0 TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCACGATCCGGGCGCCGT 180
consensus_4211#1 TCGGCAGGATGGGATTTGGATGCAAGCACTACAGGAGGAGGTGCAGGATCCGGGCGCCGT 134
********************************************* **************
consensus_4211#0 GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 240
consensus_4211#1 GCTGCAACGACGTCTTCCACTGCCGCCATTGCCACAACGAGTCCACGAAAGACGGCCACG 194
************************************************************
consensus_4211#0 AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 300
consensus_4211#1 AGCTCGATCGGCACGCGGTTGAATCGGTTATCTGTCTCGTCTGTGACACCGAACAGCCGG 254
************************************************************
consensus_4211#0 TTGCGCAAGTGTGCTACAACTGCGGTGTTTGCATGGGCGAGTACTTATGCAGCGCGTGCA 360
consensus_4211#1 TTGCGCAAGTGTGCTACAACTGCGGCGTTTGCATGGGCGAGTACTTCTGCAGCGCGTGCA 314
************************* ******************** *************
consensus_4211#0 AATTCTTCGACCACGACGTTGACAGGGAACATCTTCACTGCCAAGATTGCGGCATCTGCA 420
consensus_4211#1 AATTCTTCGACGACGACGTTGACAGGGAACACTTCCACTGCCAAGATTGCGGCATCTGCA 374
*********** ******************* * *************************
consensus_4211#0 TAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAAAAATGTGGATCATGCTACTCGGTCA 480
consensus_4211#1 GAGTTGGAGGGAAGGATAACTTCTTCCACTGCGAANAATGTGGATCATGCTACTCGGTCA 434
********************************** ************************
consensus_4211#0 GCCTGCGCGATA-GCACTGGTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCAGCT 539
consensus_4211#1 GCCTGCGCGACAAGCACTGCTGCATCGAGAACTCCATGAAGAACAACTGCCCCATCTGTT 494
********** * ****** ************************************ * *
consensus_4211#0 ACGAGTATCTGTTTGACTCTCTAAGG-AGACGTCCGTGCTCAGATGTGGGCACACGATGC 598
consensus_4211#1 ACGAGTATCTGTTTGACTCTCTAAGGGAGACGTCCGTGCTCAGATGTGGGCACACGATGC 554
************************** *********************************
consensus_4211#0 ACCTGCAATGCT-CCACGAGATGCTGAAGCACGACAAGTAATCGCCCATGCTGTGCTGAT 657
consensus_4211#1 ACCTGCNATGCTTCCACGAGATGCTGAAGCACGACNAGT--------------------- 593
****** ***** ********************** ***
consensus_4211#0 CTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTGCTAGATTAGT 717
consensus_4211#1 ------------------------------------------------------------
consensus_4211#0 CATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCC 777
consensus_4211#1 --------------------------------------------------TCTCTTGTCC 603
**********
consensus_4211#0 CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 837
consensus_4211#1 CATATGCTCGATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGAT 663
************************************************************
consensus_4211#0 TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 897
consensus_4211#1 TGAAGCAAATATGCTGCACATAGATTACATGGGAAAGGGATGGATCGTGTGCAACGACTG 723
************************************************************
consensus_4211#0 CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCCATTGCCAGTC 957
consensus_4211#1 CAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTGCTGCCATTGCCAGTC 783
******************************************** ***************
consensus_4211#0 TCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTT 1017
consensus_4211#1 TCACAACACCTGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTAAATTGAGTAAATTT 843
** ****** ************************************ *************
consensus_4211#0 CATATAAAATTCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATT 1077
consensus_4211#1 CATATAAAATTCA-GCTGCAGATGC-TGTCA-GCACCG-CAGC-ATCA-TATTATTGATT 897
************* ****** **** ***** ****** **** **** ***********
consensus_4211#0 TATACTTAGTATTCAGTAGTACCCGCTGGGTTAATTTAAGTAGCCAATTAAGTGTATTTT 1137
consensus_4211#1 TATACTTAGTATTCAGTAGTATTGGCTGGGTTATTTTAAGTAGCCAATTAAGTGTATTTT 957
********************* ********* **************************
consensus_4211#0 CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGAGATTATACACGATTTTATGT 1197
consensus_4211#1 CAGTCCAACATGAACTGCATGGGTCACATCTTGTATGCGA-ATTATACACG-TTTTATGT 1015
**************************************** ********** ********
consensus_4211#0 AACAAAGCAAGGTGAA---------------- 1213
consensus_4211#1 AACAAAGCAAGGTGAATTTGAAAGGCGAAGAA 1047
****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||