cluster # 4212

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Oryza sativa
cluster # 4212 cluster # 4212 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4212#0 length = 802 sequences # 2

consensus_4212#1 length = 696 sequences # 1

consensusID : consensus_4212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 802
fasta sequence

                              [TTTTTTTGGTGAAAAACTGAAGCTTCACGTGTTACGCTATGCCATTCGAAACAAGCACACACAGGTAAAAACATCTAAATATTACAATGGACCATCATGCATGTGCTCTAGTCTAGTTGCAGCACAGTAATGCAACAACCGCATAACAATCTACGGCAAAAG-AAAAAAAAAAGAAAAACTGCATATTAGTCCAGCGTAAGATTACATCTCCATTTGCTACCGCTGCATAAAATTGCCAGCCTAGTCGAAGCCGGGAACTTCACCTGGCATGGGGGC-AGCTGGTTCTTCCCAAA-CTCTCCTCATCAAAGAAGGTGGCACGCACCACCCG-CCGCCAAAGAAGCGCCCTTCCAGATCAATCATCGCCTTGGTTG-TTCTTCCG-CCTCTCAAACAGTATGAAGATCCTCACGG-CTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACACTCTGAGG-CACTTCTTCCTCCAGGTCATCATCAACCTCACCTGGACCAACCATATTACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTCTTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCACTAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCATCCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGAGGAAGACGAGTTCCCAATAGCGAAGC]

[-] EMBL BI813671             [TTTTTTTGGTGAAAAACTGAAGCTTCACGTGTTACGCTATGCCATTCGAAACAAGCACACACAGGTAAAAACATCTAAATATTACAATGGACCATCATGCATGTGCTCTAGTCTAGTTGCAGCACAGTAATGCAACAACCGCATAACAATCTACGGCAAAAG AAAAAAAAAAGAAAAACTGCATATTAGTCCAGCGTAAGATTACATCTCCATTTGCTACCGCTGCATAAAATTGCCAGCCTAGTCGAAGCCGGGAACTTCACCTGGCATGGGGGC AGCTGGTTCTTCCCAAA CTCTCCTCATCAAAGAAGGTGGCACGCACCACCCG CCGCCAAAGAAGCGCCCTTCCAGATCAATCATCGCCTTGGTTG TTCTTCCG CCTCTCAAACAGTATGAAGATCCTCACGG CTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACACTCTGAGG CACTTCTTCCTCCAGGTCAT                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB684923             [                                                                                  TACAATGGACCATCATGCATATGCTCTAGTCTAGTTGCAGCACAGTAATGCAACAACCGCATAACAATCTACGGCAAAAGAAAAAAAAAAAGAAAAACTGCATATTAGTCCAGCGTAAGATTACATCTCCATTTGCTACCGCTGCATAAAATTGTCAGCCTAGTCGAAGCCGGCAACTTCACCTGGCATGGGGGCAAGCTGGTTCTTCCCAAACCTCTCCTCATCAAAGAAAGTGGCACGCACCACCCGCCCGCCAAAGAAGCGCCCTTCCAGATCAATCATCGCCTTGGTTGCTTCTTCCGCCCTCTCAAACAGTATGAAGATCCTCACGGCCTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACACTCTGAGGCCACTTCTTCCTCCAGCTCATCATCAACCTCACCTGGACCAACCATATTACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTCTTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCACTAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCATCCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGAGGAAGACGAGTTCCCAATAGCGAAGC]




>consensus_4212#0
TTTTTTTGGTGAAAAACTGAAGCTTCACGTGTTACGCTATGCCATTCGAAACAAGCACAC
ACAGGTAAAAACATCTAAATATTACAATGGACCATCATGCATGTGCTCTAGTCTAGTTGC
AGCACAGTAATGCAACAACCGCATAACAATCTACGGCAAAAGAAAAAAAAAAGAAAAACT
GCATATTAGTCCAGCGTAAGATTACATCTCCATTTGCTACCGCTGCATAAAATTGCCAGC
CTAGTCGAAGCCGGGAACTTCACCTGGCATGGGGGCAGCTGGTTCTTCCCAAACTCTCCT
CATCAAAGAAGGTGGCACGCACCACCCGCCGCCAAAGAAGCGCCCTTCCAGATCAATCAT
CGCCTTGGTTGTTCTTCCGCCTCTCAAACAGTATGAAGATCCTCACGGCTCTTCGGCGGG
GAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACA
CTCTGAGGCACTTCTTCCTCCAGGTCATCATCAACCTCACCTGGACCAACCATATTACGG
AGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTCTTGC
TTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCACTAGA
GGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCATCCTG
GCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGAGGAA
GACGAGTTCCCAATAGCGAAGC

consensusID : consensus_4212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [GCCCCTGCCAGCTCACTTCCTCCACCGGCGGCTCCCCCCTCGCGGCGCCCATCGCCCCCATCGCCGCCGCACGGCCACGCCTCGCGTCGTCATAGTCGTCTTCCTCGATCAATCCGCTCCGCTCCGTCTTCCTTCGATCCATAGGATTCGATAGCAATTGGCGAAGATGCTGGGCGGATTGTACGGCGACCTCCCGCCGCCGTCGTCCTCCGCCGACGATGACAAGCCCTCCGCCGCCGGCTGGTCCAGCGCCGCCAAGATGGCGCCGGCCGCTCTCTGCGAGCTCTCAAACAGTATGAAGATCCTCACGGCCTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACACTCTGAGGCCACTTCTTCCTCCAGCTCATCATCAACCTCACCTGGACCAACCATATTACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTCTTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCACTAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCATCCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGAGGAAGACGAGTTCCC]

[+] EMBL CB684922             [GCCCCTGCCAGCTCACTTCCTCCACCGGCGGCTCCCCCCTCGCGGCGCCCATCGCCCCCATCGCCGCCGCACGGCCACGCCTCGCGTCGTCATAGTCGTCTTCCTCGATCAATCCGCTCCGCTCCGTCTTCCTTCGATCCATAGGATTCGATAGCAATTGGCGAAGATGCTGGGCGGATTGTACGGCGACCTCCCGCCGCCGTCGTCCTCCGCCGACGATGACAAGCCCTCCGCCGCCGGCTGGTCCAGCGCCGCCAAGATGGCGCCGGCCGCTCTCTGCGAGCTCTCAAACAGTATGAAGATCCTCACGGCCTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCTACACTCTGAGGCCACTTCTTCCTCCAGCTCATCATCAACCTCACCTGGACCAACCATATTACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTCTTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCACTAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCATCCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGAGGAAGACGAGTTCCC]




>consensus_4212#1
GCCCCTGCCAGCTCACTTCCTCCACCGGCGGCTCCCCCCTCGCGGCGCCCATCGCCCCCA
TCGCCGCCGCACGGCCACGCCTCGCGTCGTCATAGTCGTCTTCCTCGATCAATCCGCTCC
GCTCCGTCTTCCTTCGATCCATAGGATTCGATAGCAATTGGCGAAGATGCTGGGCGGATT
GTACGGCGACCTCCCGCCGCCGTCGTCCTCCGCCGACGATGACAAGCCCTCCGCCGCCGG
CTGGTCCAGCGCCGCCAAGATGGCGCCGGCCGCTCTCTGCGAGCTCTCAAACAGTATGAA
GATCCTCACGGCCTCTTCGGCGGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCG
CAACACCGTCCCGTACTTGCTACACTCTGAGGCCACTTCTTCCTCCAGCTCATCATCAAC
CTCACCTGGACCAACCATATTACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTT
GACAGATTTTGGCTTCTTTTCTTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCT
CCTATCAGTCTTTTTAGCCACTAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCC
CTGGCCTTCCTTCCACCCCATCCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCC
GGCGCCAAGGCCCAGCCCAGAGGAAGACGAGTTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4212#0      TTTTTTTGGTGAAAAACTGAAGCTTCACGTGTTACGCTATGCCATTCGAAACAAGCACAC 60
consensus_4212#1      ------------------------------------------------------------
                                                                                  

consensus_4212#0      ACAGGTAAAAACATCTAAATATTACAATGGACCATCATGCATGTGCTCTAGTCTAGTTGC 120
consensus_4212#1      -----------------GCCCCTGCCAGCTCACTTCCTCCACCGGCGGCTCCCCCCTCGC 43
                                            * * *     * ** * **   **      *   * **

consensus_4212#0      AGCACAGTAATGCAACAACCGCATAACAATCTACGGCAAAAGAAAAAAAAAAGAAAAACT 180
consensus_4212#1      GGCGCC-CATCGCCCCCATCGC----CGCCGCACGGCCACGCCTCGCGTCGTCATAGTCG 98
                       ** *   *  **  * * ***    *     ***** *              * *  * 

consensus_4212#0      GCATATTAGTCCAGCGTAAGATTACATCTCCATTTGCTACCGCTGCATAAAATTGCCAGC 240
consensus_4212#1      TCTTCCTCGATCAATCCG----CTCCGCTCCGTCTTCCTTCGATCCATAGGATT------ 148
                       * *  * *  **           *  **** * * *   ** * ****  ***      

consensus_4212#0      CTAGTCGAAGCCGGGAACTTCACCTGGCATGGGGGCAGCTGGTTCTTCCCAAACTCTCCT 300
consensus_4212#1      -CGATAGCAATTGGCGAAGATGCTGGGCGGATTGTACGGCGACCTCCCGCCGCCGTCGTC 207
                          * * *   **  *     *  ***     *   *  *      * *   *      

consensus_4212#0      CATCAAAGAAGGTGGCACGCACCACCCGCCGCCAAAGAAGCGCCCTTCCAGATCAATCAT 360
consensus_4212#1      CTCCGCCGACGATGACAAGCCC--TCCGCCGCCGGCTG---GTCCAGCGCCGCCAAG-AT 261
                      *  *   ** * ** ** ** *   ********        * **  *     ***  **

consensus_4212#0      CGCCTTGGTTGTTCTT--CCGCCTCTCAAACAGTATGAAGATCCTCACGGC-TCTTCGGC 417
consensus_4212#1      GGCGCCGGCCGCTCTCTGCGAGCTCTCAAACAGTATGAAGATCCTCACGGCCTCTTCGGC 321
                       **   **  * ***   *   ***************************** ********

consensus_4212#0      GGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCT 477
consensus_4212#1      GGGGAAGTCCGCCTGAGTGATCTCAAATATCAGCACGCGCAACACCGTCCCGTACTTGCT 381
                      ************************************************************

consensus_4212#0      ACACTCTGAGGC-ACTTCTTCCTCCAGGTCATCATCAACCTCACCTGGACCAACCATATT 536
consensus_4212#1      ACACTCTGAGGCCACTTCTTCCTCCAGCTCATCATCAACCTCACCTGGACCAACCATATT 441
                      ************ ************** ********************************

consensus_4212#0      ACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTC 596
consensus_4212#1      ACGGAGGAGCAGAACTCGTGTCGGAGGGCCATCAAAGTTGACAGATTTTGGCTTCTTTTC 501
                      ************************************************************

consensus_4212#0      TTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCAC 656
consensus_4212#1      TTGCTTGGAGCTGTTTTCGTCCACAATTACTCCTCCTCTCCTATCAGTCTTTTTAGCCAC 561
                      ************************************************************

consensus_4212#0      TAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCAT 716
consensus_4212#1      TAGAGGCGCGGTGATTCCCTGTTCTTGCTTGCCGAGCCCCTGGCCTTCCTTCCACCCCAT 621
                      ************************************************************

consensus_4212#0      CCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGA 776
consensus_4212#1      CCTGGCCATCATTCTCTGCGCGGCGGTCATCTGTCCGCCGGCGCCAAGGCCCAGCCCAGA 681
                      ************************************************************

consensus_4212#0      GGAAGACGAGTTCCCAATAGCGAAGC 802
consensus_4212#1      GGAAGACGAGTTCCC----------- 696
                      ***************