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Oryza sativa
cluster # 4214 cluster # 4214       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4214#0 length = 1464 sequences # 3  

consensusID : consensus_4214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1464
fasta sequence
                              [TCGATGGCGGCGCCGGAGAAGGTGTTCGTGGCGCTGCCGGCGGAGGCGAAGTCCGGCAGGTCGACGCTGTCGTGGGCTCTCGGCCATTTCCGGGCCACGGCCATCGTCGTCACGCATGTTCATGTGCCGCCGCAGATGATCCCCGTCATGGGAGTCAAGTTCCATGCCAGTAAACTGAATCCGGAGCAAGTGAGCTTGTTCAGAATGGCTGAGCGTGACAAGGTGGACAAGCAATTAGATCACTACGTCAATCAATGCCTGAGGATGAAGATGAAATGTGAGAAGCTAGTCATTGAGAACGAAAATGTTGTAGACGGTCTTGTTGAACTAATCAACTTGCATGGAGTGACCAAGCTAGTAATTTCAGCTGCCCCAGACAGGAATTACTCAAGAAAAATGGACAAACCTGCATCCAGGACAGCAACAGAAATTATGCAGAGAGCTGACCCATCATGCAAGATTTGGTTTGTCTGCAAAGAACGGTTAATCTGTACAAGTGGCGTGGAAGTAGAAATTGCACCTGGACATACGCCTTTCATTCCTGATACTGGTCACGATGCTCTGCAGTTGACACTTCACCAGGAACAGGATGACAACAATGAATCGGAACTGGGTTTTTACGATGAGATCAAAGAAGCATGCAAAGCAGCTGACAACTTAATGATGAGAGCTTTAAGAGAATCTTACAGACGGCAGAAAGCAGACGAAGAAGTAGTTTCATCTCTTCAGAAAGCCAAAGAATACGAGGAGCTGTACTTGGAGGAGGTTAAAAAGAGGAAAGAACTGGAAGAAGCACTTCTGAGAGCAAGCGAAGAAATTCCCCAGTTAAACCAAGAAAGAGTTCTCCCCAAGAATGATCAGAACCCACCCATGGAGGAACAGAAAGAAGTGGTTTCAGACAATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCATGATGAGAACTGTGTCAGAGAACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCATTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAGACTGCTGCATCCCTTCATACTTTATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTCACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATTACAGGACAGCCGATTGTGCACCAGCAGCTAATTCCAAACCTTTCTCTCCGTTCTGTCATCCAAGATCATGCAAGGAGGAATCAATATTCATTTTCCTGATGTAACCTTTAATTACGAACTGTATTGGTGGC----ATATATATATATATGTGCCATTATTTCCTGTAAATTTTTTAGCTATCACTATGACAGTATAGCCAGTTCGGAAACTGCACAACTCACAGAATGCAGAAAGAAAATGCTTTGATTTTGTCTAAAAAAAAAAAAA]

[+] EMBL AK121815             [TCGATGGCGGCGCCGGAGAAGGTGTTCGTGGCGCTGCCGGCGGAGGCGAAGTCCGGCAGGTCGACGCTGTCGTGGGCTCTCGGCCATTTCCGGGCCACGGCCATCGTCGTCACGCATGTTCATGTGCCGCCGCAGATGATCCCCGTCATGGGAGTCAAGTTCCATGCCAGTAAACTGAATCCGGAGCAAGTGAGCTTGTTCAGAATGGCTGAGCGTGACAAGGTGGACAAGCAATTAGATCACTACGTCAATCAATGCCTGAGGATGAAGATGAAATGTGAGAAGCTAGTCATTGAGAACGAAAATGTTGTAGACGGTCTTGTTGAACTAATCAACTTGCATGGAGTGACCAAGCTAGTAATTTCAGCTGCCCCAGACAGGAATTACTCAAGAAAAATGGACAAACCTGCATCCAGGACAGCAACAGAAATTATGCAGAGAGCTGACCCATCATGCAAGATTTGGTTTGTCTGCAAAGAACGGTTAATCTGTACAAGTGGCGTGGAAGTAGAAATTGCACCTGGACATACGCCTTTCATTCCTGATACTGGTCACGATGCTCTGCAGTTGACACTTCACCAGGAACAGGATGACAACAATGAATCGGAACTGGGTTTTTACGATGAGATCAAAGAAGCATGCAAAGCAGCTGACAACTTAATGATGAGAGCTTTAAGAGAATCTTACAGACGGCAGAAAGCAGACGAAGAAGTAGTTTCATCTCTTCAGAAAGCCAAAGAATACGAGGAGCTGTACTTGGAGGAGGTTAAAAAGAGGAAAGAACTGGAAGAAGCACTTCTGAGAGCAAGCGAAGAAATTGCACAGTTAAAACAAGAAAGAGATCTACCCAAGAATGATCAGAACACAACCATGGAGGAACAGAAAGAAGTGATTTCAGACAATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCATGATGAGAACTGTGTCAGAGAACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCATTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAGACTGCTGCATCCCTTCATACTTCATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTCACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATTACAGGACAGCCGATTGTGCACCAGCAGCTAATTCCAAACCTTTCTCTCCGTTCTGTCATCCAAGATCATGCAAGGAGGAATCAGTATTCATTTTCCTGATGTAACCTTTAATTACGAACTGTATTGGTGGCATATATATATATATATATGTGCCATTATTTCCTGTAAATTTCTTAGCTATCACTATGACAGTATAGCCAGTTCGGAAACTGCACAACTCACAGAATGCAGAAAGAAAATGCTTT                       ]
[-] EMBL CA759007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTGAGAGCAAGCGAAGAAATTCCCCAGTTAAACCAAGAAAGAGTTCTCCCCAAGAATGATCAGAACCCACCCATGGAGGAACAGAAAGAAGTGGTTTCAGACAATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCATGATGAGAACTGTGTCAGAGAACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCATTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAGACTGCTGCATCCCTTCATACTTTATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTCACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATTACAGGACAGCCGATTGTGCACCAGCAGCTAATTCCAAACCTTTCTCTCCGTTCTGTCATCCAAGATCATGCAAGGAGGAATCAATATTCATTTTCCTGATGTAACCTTTAATTACGAACTGTATTGGTGGC    ATATATATATATATGTGCCATTATTTCCTGTAAATTTTTTAGCTATCACTATGACAGTATAGCCAGTTCGGAAACTGCACAACTCACAGAATGCAGAAAGAAAATGCTTTGATTTTGTCTAAAAAAAAAAAAA]
[-] EMBL CA759008             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTGAGAGCAAGCGAAGAAATTCCCCAGTTAAACCAAGAAAGAGTTCTCCCCAAGAATGATCAGAACCCACCCATGGAGGAACAGAAAGAAGTGGTTTCAGACAATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCATGATGAGAACTGTGTCAGAGAACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCATTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAGACTGCTGCATCCCTTCATACTTTATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTCACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATTACAGGACAGCCGATTGTGCACCAGCAGCTAATTCCAAACCTTTCTCTCCGTTCTGTCATCCAAGATCATGCAAGGAGGAATCAATATTCATTTTCCTGATGTAACCTTTAATTACGAACTGTATTGGTGGC    ATATATATATATATGTGCCATTATTTCCTGTAAATTTTTTAGCTATCACTATGACAGTATAGCCAGTTCGGAAACTGCACAACTCACAGAATGCAGAAAGAAAATGCTTTGATTTTGTCTAAAAAAAAAAAAA]


>consensus_4214#0 TCGATGGCGGCGCCGGAGAAGGTGTTCGTGGCGCTGCCGGCGGAGGCGAAGTCCGGCAGG TCGACGCTGTCGTGGGCTCTCGGCCATTTCCGGGCCACGGCCATCGTCGTCACGCATGTT CATGTGCCGCCGCAGATGATCCCCGTCATGGGAGTCAAGTTCCATGCCAGTAAACTGAAT CCGGAGCAAGTGAGCTTGTTCAGAATGGCTGAGCGTGACAAGGTGGACAAGCAATTAGAT CACTACGTCAATCAATGCCTGAGGATGAAGATGAAATGTGAGAAGCTAGTCATTGAGAAC GAAAATGTTGTAGACGGTCTTGTTGAACTAATCAACTTGCATGGAGTGACCAAGCTAGTA ATTTCAGCTGCCCCAGACAGGAATTACTCAAGAAAAATGGACAAACCTGCATCCAGGACA GCAACAGAAATTATGCAGAGAGCTGACCCATCATGCAAGATTTGGTTTGTCTGCAAAGAA CGGTTAATCTGTACAAGTGGCGTGGAAGTAGAAATTGCACCTGGACATACGCCTTTCATT CCTGATACTGGTCACGATGCTCTGCAGTTGACACTTCACCAGGAACAGGATGACAACAAT GAATCGGAACTGGGTTTTTACGATGAGATCAAAGAAGCATGCAAAGCAGCTGACAACTTA ATGATGAGAGCTTTAAGAGAATCTTACAGACGGCAGAAAGCAGACGAAGAAGTAGTTTCA TCTCTTCAGAAAGCCAAAGAATACGAGGAGCTGTACTTGGAGGAGGTTAAAAAGAGGAAA GAACTGGAAGAAGCACTTCTGAGAGCAAGCGAAGAAATTCCCCAGTTAAACCAAGAAAGA GTTCTCCCCAAGAATGATCAGAACCCACCCATGGAGGAACAGAAAGAAGTGGTTTCAGAC AATTTGATCTTAGAGGCCTCCGGGCAAATAATTAAGCCGCTGCAAGAGTATCTTGATCAT GATGAGAACTGTGTCAGAGAACCGGAGACGTTGCTCATACAAAGGAAGCTAGCTGCATCA TTTTCTCCATCATCAGTGATGCAGTCGCCTTTCGATGAAGACTGCTGCATCCCTTCATAC TTTATCTGCCCAATCCTTCAGGAGGTTATGAGGGAGCCTTGCATTGCATCAGACGGATTC ACCTACGAAACCGATGCGATCAGATCCTGGCTTGATGGAGGACGGAGGGTATCTCCCATT ACAGGACAGCCGATTGTGCACCAGCAGCTAATTCCAAACCTTTCTCTCCGTTCTGTCATC CAAGATCATGCAAGGAGGAATCAATATTCATTTTCCTGATGTAACCTTTAATTACGAACT GTATTGGTGGCATATATATATATATGTGCCATTATTTCCTGTAAATTTTTTAGCTATCAC TATGACAGTATAGCCAGTTCGGAAACTGCACAACTCACAGAATGCAGAAAGAAAATGCTT TGATTTTGTCTAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)