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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1425 fasta sequence
[CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCAGAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTTCATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAGGGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGGCCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTCCATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATCACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGCCGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCAGCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACCGGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGCCAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCGGATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGACCAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTGCCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGTGATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCGCTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGGCGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGGCCATGTCTCCCTCTTCGCCGGCCACCAGCCGGTCATGCCGCTCGACGCCCCCCGCGCCGGCAAGAGGCAGCGATCGTCCTCGGCGTCCGTCGCCGGGAACATTGACGACACCACCGGCATTGGCATGGGCGCCGCCTGACGACCTTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAAGATTCAATCCAGTACTGCATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACACACATGTTAATTTGGAAATCGATCAGGGCAGCAATTTCAGGCAGTTTATCAGTTAGTTCTATACATTAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAGCTAGGGGCTTTAGCTTTACAATATAATACTAA]
[+] EMBL AK063290 [CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCAGAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTTCATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAGGGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGGCCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTCCATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATCACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGCCGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCAGCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACCGGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGCCAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCGGATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGACCAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTGCCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGTGATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCGCTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGGCGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGGCCATGTCTCCCTCTTCGCCGGCCACCAGCCGGTCATGCCGCTCGACGCCCCCCGCGCCGGCAAGAGGCAGCGATCGTCCTCGGCGTCCGTCGCCGGGAACATTGACGACACCACCGGCATTGGCATGGGCGCCGCCTGACGACCTTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAAGATTCAATCCAGTACTGCATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACACACATGTTAATTTGGAAATCGATCAGGGCAGCAATTTCAGGCAGTTTATCAGTTAGTTCTATACATTAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAGCTAGGGGCTTTAGCTTTACAATATAATACTAA]
consensusID : consensus_4215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence
[GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAG-AGCGCGGCGGCGCTGGCGAAGCCGCCGCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCGCTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGGCCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGCCCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGACGTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGATGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAATGGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATATATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG]
[+] EMBL AK121826 [GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAG AGCGCGGCGGCGCTGGCGAAGCCGCCGCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCGCTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGGCCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGCCCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGACGTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGGCAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGATGAGTTCTTCTCCGCGGGAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGATGCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAATGGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATATATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAAAGTGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG]
[+] EMBL AU108188 [ CTGCAGCTGGAGGAGGACGAGATCCTGGCGCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAA CTGCGGATGCACATGCGCGGGCACGGCGACGAGTACAAGAAGCGCGGCGGCGCTGGCGAAGCCGCCGCCG CCGCCGGAGGGGGAGGAGCAGCCGCCGCAGCCGGAGAGGAGGTACTCGTGCCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGATCCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4215#0 CATGATTCCAGGCGGTGGCGGCGGCGGCGGCGGCGGCGGAATTAGCCCTTACTTGGTGCA 60
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 GAGCCAGCATGGGCATGGTGGCGGCGTCGACGGCATGGAGATGGAGGAGGGCGGCGGCTT 120
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 CATGGGCGAGCAGCCACAGTGCCACCCGCTGCTCTACAACCTGTCCGTGCTCAAGGACAG 180
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 GGTGCAGCAGCTGCACCCGCTCGTTGGCCTCGCCGTCGCCCACAACGCCCACGCCCACGG 240
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 CCCCCTCGACGTCTCCGCCGCCGACGCCATCATCCAGGAAATCGTCGCCGCCGCCTCCTC 300
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 CATGATGTACGCCTTCCAGCTGCTCTGCGACCTCGGCACGGCGCCAACCACCGCGCCATC 360
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 ACAGGAGACCGCCGCCGCCTCCGCCGTTGTTGTCAAGAACAACGACCATGCCGCCGATGC 420
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 CGGTCAGATGGAGGACGACCATCTCATGCAGCAGCAGTGGCAGCAGAACGGCAGCCGCCA 480
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 GCACGATTACAGCAGCCATGCCCATGCGCCGCCGGTGTTCCACAGCGAAACGGCGGCACC 540
consensus_4215#1 ------------------------------------------------------------
consensus_4215#0 GGCAGGCGCGACGTCGGCGACGGACACGATCATCGAGCTGGACGCGGCGGAGCTGCTTGC 600
consensus_4215#1 ---------------------------GGTGCTGCAGCTGGAGGAGGACGAGATCCTGGC 33
* * * ******* * ** *** * ** **
consensus_4215#0 CAAGTACACGCACTACTGCCAGGTGTGCGGCAAGGGGTTCAAGCGCGACGCCAACCTGCG 660
consensus_4215#1 GCCGCACACGCACTTCTGCGGCATCTGCGGCAAGGGGTTCAAGCGCGACGCGAACCTGCG 93
* ********* **** * ************************** ********
consensus_4215#0 GATGCACATGCGCGCGCACGGCGACGAGTACAAGAGCAAGGCGGCGCTGTCCAATCCGAC 720
consensus_4215#1 GATGCACATGCGCGGGCACGGCGACGAGTACAAGAGCGCGGCGGCGCTGGCGAAGCCGCC 153
************** ********************** ********** * ** *** *
consensus_4215#0 CAAGCTGCTCGCCAAGGGAGGCGACGAGACGATGGCGGCGGCGGCGAGGAAGTACTCGTG 780
consensus_4215#1 ---GCCGCCCGCCGGAGGGGGAGGAGCAGCCGCCGCAGC--CGGAGAGGAGGTACTCGTG 208
** ** **** ** ** * * * ** ** *** ***** *********
consensus_4215#0 CCCGCAGGAGGGTTGCCGGTGGAACAGGAGGCACGCCAAGTTCCAGCCGCTCAAGTCGGT 840
consensus_4215#1 CCCGCACGCCGGGTGCAAGCGGAACCGGATGCACGCGAGCTTCCAGCCGCTGAAGACGAT 268
****** * ** *** * ***** *** ****** * *********** *** ** *
consensus_4215#0 GATCTGCGCAAAGAACCACTACAAGCGCAGCCATTGCCCCAAGATGTACGTGTGCAACCG 900
consensus_4215#1 CCTGTGCGTGAAGAACCACTACAAGCGGAGCCACTGCGAGAAGCGCCATGTCTGCGGCCG 328
* **** ***************** ***** *** *** * ** *** ***
consensus_4215#0 CTGCGGCCGCAAGCACTTCTCCGTCCTCTCCGACCTCCGCACCCACGAGAAGCACTGCGG 960
consensus_4215#1 CTGCGGCGCCAAGCGCTTCTCCGTCATGGCCGACCTCAAGACCCACGAGAAGCACTGCGG 388
******* ***** ********** * ******** ********************
consensus_4215#0 CGACCACCGCTGGCTCTGCTCCTGCGGCACCTCCTTCTCCCGCAAGGACAAGCTTATCGG 1020
consensus_4215#1 CCGCGACCGCTGGCTCTGCTCCTGCGGCACCAGCTTCTCCCGCAAGGACAAGCTCTTCGC 448
* * ************************** ********************* ***
consensus_4215#0 CCATGTCTCCCTCTTCGCCGGCCAC-CAGCCGGTCATGCCGCTC----GACGCCCCCCGC 1075
consensus_4215#1 CCACGTCGCCCTCTTCCAGGGCCACGCCCCCGCTCTCCCCCCTCCCCCGCCGCCGCCGAC 508
*** *** ******** ****** * *** ** ** *** * **** ** *
consensus_4215#0 GCCGG-------------CAAGAGGCAGCGATCG---TCCTCGGCGTCCGTCGCCGGGAA 1119
consensus_4215#1 GTCGGGTCGCCGCCGCCACAAGCAGGAGGAGCCGGAGTTCACGTGGGGCGGCGGCGGCGG 568
* *** **** * ** ** * * ** * ** ** ***
consensus_4215#0 CA---------TTGACGACA------CCACCGGCATTGGCATGGGCGCCGCCTGACGACC 1164
consensus_4215#1 CAATGAGTTTCTTGACGTCAAAGGGATCGCCGGCGTCGGGTCCGGCTCCGGTGGTGGGGA 628
** ****** ** * ***** * ** *** *** * *
consensus_4215#0 TTACTAACTAACTGTGATTGTATTGTTGCCATCACCTGCTGCATATATATGTCCATGAAA 1224
consensus_4215#1 TGAGTTCTTCTCCGCGG--GAAGCTTCGGCGCCATGGATTTCGGATTCGGGCAGTTGGAT 686
* * * * * * * * * * * * ** * * ** * ** *
consensus_4215#0 GATTCAATC-CAGTACTGC-ATGGCTAGTTAAATTAGCATGACAATGCTAATTGGAACAC 1282
consensus_4215#1 GCTTCGCTCGCGATGCTGCTGCCATCCGAGCAATTCGCGGGTGATCATCAGGAGGAGAAT 746
* *** ** * * **** * **** ** * * * *** *
consensus_4215#0 ----ACATGTTAATTTGGAAATCGATCAGGGC-AGCAATTTCAGGCAGTTTATCAGT-TA 1336
consensus_4215#1 GGTGACAAGTGAAGGTGCACATGATGCGTAGCGAGTTGCATATGATCATATATATATATA 806
*** ** ** ** * ** * ** ** * * * *** * **
consensus_4215#0 GTTCTATACAT---TAGCTTATGAGATGTGTGATGAATATATACTGTATTAGCTAACTAG 1393
consensus_4215#1 TATATATATATATATGACGTATGTATTTCATGGTGTAATAGCATTGTGTTATCTAA--AG 864
* **** ** * * **** * ** ** * * *** *** **** **
consensus_4215#0 CTAGGGGCTTTAGCTTTACAATATAATACTAA----------------------- 1425
consensus_4215#1 TGGAAGAAGTTGTTCTTCCCATCTTGTACCATCTTATATGCACTTCTTTATTAAG 919
* ** ** * ** * *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||