Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4221 cluster # 4221       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4221#0 length = 1005 sequences # 3  

consensusID : consensus_4221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1005
fasta sequence
                              [TTTCCCAAGTCCTCCTGCCGCCGCAGCGCCGCGGAGGAAGAAAGTAGAAACTGCTTCCCCCTCCTCTTCCCCTCTTCTCGCGGGAATCTCCCCGTCTCCGCCGCGAAACCATGGAAGCTGCCGCCGGCGCCGGCGCCGGATTGGCGGAGGCAGCGAACGGCGGGATCGAGAGCTCGGCCGCCGACCCCTCCACCTCCGGCACCGCCTCGCGGCTCTCCGTCCACCGGATCGCCGGCGGCGGGAAAGCTGCTGATATCATCTTATGGAAGCGTGGACGTGTTACAATTGGTGTTATATTTGGCGCTACAATGGCATGGTGGCTGTTTGAGAAATCTGGACTGTCCTTCTTGACAGTTTGCTCTGATGTACTGCTCATTTTGATTGTTGTGCAGTTCATACGGATTAAAGTAGCTGGATTGCTAAATAAGCAACCTAGGCCACTACCTGAGTTAGTTTTATCAGAGGAAATGGTTAGCAATGCTGCAGCTTCATTCCGTGTTAAAGTCAACAACATGCTGATGATCGCACATGACATTACTCTTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTATTGGAAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAATACCTGCATTATACAGTAAGAACCAGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACAGGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATGAGCAGGCTACCAAGAAGCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACTATATCCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCAAATTAGGAATTTAGGGCAAAAGCTGGAGTATGCTGTAGATGCCACTGCAATGTGCTACTATTCTAACTCTTGAGCAATAAGGTTCGAAACAAAAAAAAAATATTT]

[+] EMBL AK061202             [TTTCCCAAGTCCTCCTGCCGCCGCAGCGCCGCGGAGGAAGAAAGTAGAAACTGCTTCCCCCTCCTCTTCCCCTCTTCTCGCGGGAATCTCCCCGTCTCCGCCGCGAAACCATGGAAGCTGCCGCCGGCGCCGGCGCCGGATTGGCGGAGGCAGCGAACGGCGGGATCGAGAGCTCGGCCGCCGACCCCTCCACCTCCGGCACCGCCTCGCGGCTCTCCGTCCACCGGATCGCCGGCGGCGGGAAAGCTGCTGATATCATCTTATGGAAGCGTGGACGTGTTACAATTGGTGTTATATTTGGCGCTACAATGGCATGGTGGCTGTTTGAGAAATCTGGACTGTCCTTCTTGACAGTTTGCTCTGATGTACTGCTCATTTTGATTGTTGTGCAGTTCATACGGATTAAAGTAGCTGGATTGCTAAATAAGCAACCTAGGCCACTACCTGAGTTAGTTTTATCAGAGGAAATGGTTAGCAATGCTGCAGCTTCATTCCGTGTTAAAGTCAACAACATGCTGATGATCGCACATGACATTACTCTTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTATTGGAAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAATACCTGCATTATACAGTAAGAACCAGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACAGGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATGAGCAGGCTACCAAGAAGCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACTATATCCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCAAATTAGGAATTTAGGGCAAAAGCTGGAGTATGCTGTAGATGCCACTGCAATGTGCTACTATTCTAACTCTTGAGCAATAAGGTTCGAAACAAAAAAAAAATATTT]
[+] EMBL AK104475             [TTTCCCAAGTCCTCCTGCCGCCGCAGCGCCGCGGAGGAAGAAAGTAGAAACTGCTTCCCCCTCCTCTTCCCCTCTTCTCGCGGGAATCTCCCCGTCTCCGCCGCGAAACCATGGAAGCTGCCGCCGGCGCCGGCGCCGGATTGGCGGAGGCAGCGAACGGCGGGATCGAGAGCTCGGCCGCCGACCCCTCCACCTCCGGCACCGCCTCGCGGCTCTCCGTCCACCGGATCGCCGGCGGCGGGAAAGCTGCTGATATCATCTTATGGAAGCGTGGACGTGTTACAATTGGTGTTATATTTGGCGCTACAATGGCATGGTGGCTGTTTGAGAAATCTGGACTGTCCTTCTTGACAGTTTGCTCTGATGTACTGCTCATTTTGATTGTTGTGCAGTTCATACGGATTAAAGTAGCTGGATTGCTAAATAAGCAACCTAGGCCACTACCTGAGTTAGTTTTATCAGAGGAAATGGTTAGCAATGCTGCAGCTTCATTCCGTGTTAAAGTCAACAACATGCTGATGATCGCACATGACATTACTCTTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTATTGGAAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAATACCTGCATTATACAGTAAGAACCAGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACAGGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATGAGCAGGCTACCAAGAAGCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACTATATCCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCAAATTAGGAATTTAGGGCAAAAGCTGGAGTATGCTGTAGATGCCACTGCAATGTGCTACTATTCTAACTCTTGAGCAATAA                         ]
[+] EMBL AK103014             [ TTCCCAAGTCCTCCTGCCGCCGCAGCGCCGCGGAGGAAGAAAGTAGAAACTGCTTCCCCCTCCTCTTCCCCTCTTCTCGCGGGAATCTCCCCGTCTCCGCCGCGAAACCATGGAAGCTGCCGCCGGCGCCGGCGCCGGATTGGCGGAGGCAGCGAACGGCGGGATCGAGAGCTCGGCCGCCGACCCCTCCACCTCCGGCACCGCCTCGCGGCTCTCCGTCCACCGGATCGCCGGCGGCGGGAAAGCTGCTGATATCATCTTATGGAAGCGTGGACGTGTTACAATTGGTGTTATATTTGGCGCTACAATGGCATGGTGGCTGTTTGAGAAATCTGGACTGTCCTTCTTGACAGTTTGCTCTGATGTACTGCTCATTTTGATTGTTGTGCAGTTCATACGGATTAAAGTAGCTGGATTGCTAAATAAGCAACCTAGGCCACTACCTGAGTTAGTTTTATCAGAGGAAATGGTTAGCAATGCTGCAGCTTCATTCCGTGTTAAAGTCAACAACATGCTGATGATCGCACATGACATTACTCTTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTATTGGAAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAATACCTGCATTATACAGTAAGAACCAGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACAGGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATGAGCAGGCTACCAAGAAGCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACTATATCCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCAAATTAGGAATTTAGGGCAAAAGCTGGAGTATGCTGTAGATGCCACTGCAATGTGCTACTATTCTAACTCTTGAGCAATAA                         ]


>consensus_4221#0 TTTCCCAAGTCCTCCTGCCGCCGCAGCGCCGCGGAGGAAGAAAGTAGAAACTGCTTCCCC CTCCTCTTCCCCTCTTCTCGCGGGAATCTCCCCGTCTCCGCCGCGAAACCATGGAAGCTG CCGCCGGCGCCGGCGCCGGATTGGCGGAGGCAGCGAACGGCGGGATCGAGAGCTCGGCCG CCGACCCCTCCACCTCCGGCACCGCCTCGCGGCTCTCCGTCCACCGGATCGCCGGCGGCG GGAAAGCTGCTGATATCATCTTATGGAAGCGTGGACGTGTTACAATTGGTGTTATATTTG GCGCTACAATGGCATGGTGGCTGTTTGAGAAATCTGGACTGTCCTTCTTGACAGTTTGCT CTGATGTACTGCTCATTTTGATTGTTGTGCAGTTCATACGGATTAAAGTAGCTGGATTGC TAAATAAGCAACCTAGGCCACTACCTGAGTTAGTTTTATCAGAGGAAATGGTTAGCAATG CTGCAGCTTCATTCCGTGTTAAAGTCAACAACATGCTGATGATCGCACATGACATTACTC TTGGCAAGGACTTTCGACTCTTTTTCCAGGTTGTGTTGCTCCTATGGCTGTTATCTGTTA TTGGAAATTTCTGCTCGTCTATTACTCTTGCTTACTTTGGAACCATTGCTTTGGTCACAA TACCTGCATTATACAGTAAGAACCAGGAGCAAGTTGATAGGTATGCTGGGATGGTCCACA GGAACATATCAAGGCATTACAAGATTGTCGACGAAAATGTGATGAGCAGGCTACCAAGAA GCTTTATCAGAGATAAAGAGGATTGATTTGTTTAGAAGCTGTGATAGTAGTCATGCCACT ATATCCACACCCAAGTGTGTGTGTTTTCTACACTTGTATTTTTATGCCGTAGATTGTGCA AATTAGGAATTTAGGGCAAAAGCTGGAGTATGCTGTAGATGCCACTGCAATGTGCTACTA TTCTAACTCTTGAGCAATAAGGTTCGAAACAAAAAAAAAATATTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)