These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAAACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGCAAATAAGTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAACTAACTAAATACTTATGCA-AGTAAACAAAAATGT-GTTATAACATTATCATAACTAAACTCATTTGCAAGTACACAAATTAGGAAGACATTAACAAAAAGCAC-CAACTGTAAACATTAACTACTA-GTGAACATCGCACTACCACAGCATATAAATCAGTCC] [+] EMBL CB628397 [TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAAACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGCAAATAAGTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAACTAACTAAATACTTATGCA AGTAAACAAAAATGT GTTATAACATTATCATAACTAAACTCATTTGCAAGTACACAAATTAGGAAGACATTAACAAAAAGCAC CAACTGTAAACATTAACTACTA GTGAACATCGCACTACCACAGCATATAAATCAGTCC] [+] EMBL CA761599 [ ttttttttTTTTTTTCTCGAAGGCGCAAAAGAATTGAACGTCAATATATACAAACATGCCTCTGTTTTTACCAAACTA CTTTAGAAAAATCAAATACAAATATCATCAGAAGTTATACCTACGGACTTTTCATCTTTAAAACACAACAATTCACATACCATGTGACCAAATTCAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGGAGCTACTAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACAAACATTACAATGATCAATCAACAAACAGAACAAGATGCACCCGAATCAACAATCACCAGACTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGTAAAATGGCATTATCGCAACTTGACACTTATGCAAGTCTCACCAAATAATTAATAGTATTATCACAACTAACTAAACACTTATGCAAGTAGACAACAAACAGGTGATAAATTTATGATAACTAACTAAATACTTACGCACAGT ACCAAAACGGTGGCTATACCATTATCATAGCTAGACTCATTTGCGAGTACCCAAATTAGAACCACTTTAACCAAATGCCCTTAGGTGTAAGCCTTAACCACCAGGGGAACATCGGACTAac ] consensusID : consensus_4225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [ACTTAACAAGTAGGTACAAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACAAACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAACTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGTAAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATTATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGACTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGCATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTAACCTAGTAAGTGAACA] [+] EMBL CA761568 [ACTTAACAAGTAGGTACAAGCACTAACATTCACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACAAACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAACTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGTAAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATTATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGACTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGCATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTAACCTAGTAAGTGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4225#0 TGGAGCATACGAACATTTTTTTCTCAAATGCACAAAAGAATTGAGCGTCAATATATACAA 60 consensus_4225#1 ------------------------------------------------------------ consensus_4225#0 ACATGCCTCTGGTTTTACCAAACTACCTTTAGAAAAATCAAATACAAATATCATCAGAAG 120 consensus_4225#1 ------------------------------------------------------------ consensus_4225#0 TTATACCTACTGACTTTTCATCTTTAAAGCACAACAATTCACATACCATGTGACCAAATT 180 consensus_4225#1 ------------------------------------------------------------ consensus_4225#0 CAGGTAAATTTAGAATTTCATATCCTACCTACTTAACAAGTAGCTACTAGCACTAACATT 240 consensus_4225#1 ------------------------------ACTTAACAAGTAGGTACAAGCACTAACATT 30 ************* *** ************ consensus_4225#0 CACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGTGCAAGTTGGCCAATCACA 300 consensus_4225#1 CACATTTCGGACACAACAGATAATAGCGCATATTAGCTAGGGGCAAGTTGGCCAATCACA 90 ***************************************** ****************** consensus_4225#0 AACATTACAATGATCAATCAACAAACAGAACAAGATGAAACCGAATCAACAATCACCAGA 360 consensus_4225#1 AACATTACAAGGATCAATCAACAAACAGAACAGGATGCAACCGAATCAACAATCACCAAA 150 ********** ********************* **** ******************** * consensus_4225#0 CTTAACGTCACCACATTTAAGCTCCTGTCCATTTTAAACTACAATAAATCATAAGACAGT 420 consensus_4225#1 CTTAACGTCACCACATTGAAGCTCCTGTCCATTTTAAACTACAATAAATCAGAAGACAGT 210 ***************** ********************************* ******** consensus_4225#0 AAAATGGCATTATCGCAACTTGACACTTATGCAAGTATCAGC-AAATAAGTAATAGTATT 479 consensus_4225#1 AAAATGGCATTATCGCAACTGGACACTTATGCGGGTATCAGCCGAATAAGGAATAGTATT 270 ******************** *********** ******** ****** ********* consensus_4225#0 ATCACAACTAACTAAACACTTATGCAAGTAGACAACAAATAGGTGATAAATTTATGATAA 539 consensus_4225#1 ATCACAACTAACTAAGCACTTATGCAAGGAGACGGCAAATAGGGGATAAATTTATGATGA 330 *************** ************ **** ******** ************** * consensus_4225#0 CTAACTAAATACTTATGCAAGTAAACAAAAATGTGTTATAACATTATCATAACTAAACTC 599 consensus_4225#1 CTAACTAAATACTTATGCAGGGAAACAAAAAGGGGGTAGTACATTATCGATACTAAACGC 390 ******************* * ********* * * ** ******** ******* * consensus_4225#0 ATTTGCAAGTACACAAATTA-GGAAGACATTAACAAAAAG-CACCA-ACTGTAAACATTA 656 consensus_4225#1 ATTTGGAGGGACCCAAATGACGGAAGACCTTAACAAGAAGGCGCCACAGGGGGAAAATTA 450 ***** * * ** ***** * ******* ******* *** * *** * * ** **** consensus_4225#0 ACT--ACTAGTGAACATCGCACTACCACAGCATATAAATCAGTCC 699 consensus_4225#1 ACCTAGTAAGTGAACA----------------------------- 466 ** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||