cluster # 4231

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Oryza sativa
cluster # 4231 cluster # 4231 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4231#0 length = 566 sequences # 2

consensus_4231#1 length = 359 sequences # 1

consensusID : consensus_4231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 566
fasta sequence

                              [GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACGTCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGAGCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACANGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTCGTCGTCGTCTCCGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCGGCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCCACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG]

[+] EMBL C72728               [GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACGTCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGAGCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACANGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTC                                                                                                                                                                       ]
[+] EMBL AU077589             [                                                                                                                                                                                                                                                                                                                 TCGAATGGTGCGGCGGCACCTGC TGCGCGGACACAGCCTGGACAGGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCCAGCTCTTCCTTCTCGTCGTCGTCTCCGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCGGCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCCACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG]




>consensus_4231#0
GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGT
CCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCC
TTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAACCCCCCCGTC
GTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACGTCCTCCACGC
GCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGAGCGTGTGACC
TGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACANGTTCCTGCC
GATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTCGTCGTCGTCTCCGTCGCCGCC
GCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCGGCGTCACGTG
GCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCCACTGCCGCCG
CTGCAGAAGCGGGTGCTGTCGAGGAG

consensusID : consensus_4231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 359
fasta sequence

                              [TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTCGCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGCGCGAANNCNATTTGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCGATCGTANGTTCTTCAAGCGCGGGGCGTGCTAAGNAACTTCTCTGCTGATTGNCCGCTTCTCATGAANGTG]

[+] EMBL C73102               [TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTCGCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGCGCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGGCCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGCGCGAANNCNATTTGAGCTCAACCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCGATCGTANGTTCTTCAAGCGCGGGGCGTGCTAAGNAACTTCTCTGCTGATTGNCCGCTTCTCATGAANGTG]




>consensus_4231#1
TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTC
GCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGC
GCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGG
CCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGCGCGAANNCNATTTGAGCTCAACC
CCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCGATCGTANGTTC
TTCAAGCGCGGGGCGTGCTAAGNAACTTCTCTGCTGATTGNCCGCTTCTCATGAANGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4231#0      ------------------------------------------------------------
consensus_4231#1      TGCGTGCGTGTGGTTTCCAACTTTGGCTCGCCCCTCCGGGCGCAAACACCACAACACCTC 60
                                                                                  

consensus_4231#0      ----------GAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGC 50
consensus_4231#1      GCGCCCATGCGAGGACGCAGCCATCCATCCATCCACCCAGCCCCCACACTCCTTCGGCGC 120
                                **************************************************

consensus_4231#0      GCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGG 110
consensus_4231#1      GCGCGTCCGTCCTCGATCGCGCGCGCGTCGACGAGCTAAGCCGGCCCGGGAAACCCAAGG 180
                      ************************************************************

consensus_4231#0      CCCCTCTCCCTTCCTCAAGCGCGCCGGCGGGCCTCGCCGGNGANNCNATTTGGAGCTCAA 170
consensus_4231#1      CCCCTCTCCCTTCCTCAAGNGCGCCGGCGGGCCTCGC--GCGAANNCNATTTGAGCTCAA 238
                      ******************* *****************  * ** *    ** ********

consensus_4231#0      CCCCCCCGTCGTAGTCGCACGTCGAGCGCCACCACCACCGCCAGCGCGTCGCATCGTACG 230
consensus_4231#1      CCCCCCCGTCGTAGTCGCACGTCGAGCGCCAACAACAACGGCAACGCGTCG-ATCGTANG 297
                      ******************************* ** ** ** ** ******* ****** *

consensus_4231#0      TCCTCCACGCGCGGCGCCGTGCTAGGCAACCTCCTCTGCTGATCGCCCGCCTCCTCATGA 290
consensus_4231#1      TTCTTCAAGCGCGGGGC-GTGCTAAGNAACTTC-TCTGCTGATTGNCCGCTTC-TCATGA 354
                      * ** ** ****** ** ****** * *** ** ********* * **** ** ******

consensus_4231#0      GCGTGTGACCTGCTGTCGAATGGTGCGGCGGCACTTGCTTGCGCGGACACAGCCTGGACA 350
consensus_4231#1      ANGTG------------------------------------------------------- 359
                        ***                                                       

consensus_4231#0      NGTTCCTGCCGATCAGGAGCCTCATCATGTCGTCAAGCTCTTNCTTCTCGTCGTCGTCTC 410
consensus_4231#1      ------------------------------------------------------------
                                                                                  

consensus_4231#0      CGTCGCCGCCGCCGCCGTCGTCGTCGTCGTCACGGGGAAGCAGCAGCGGCAGGTGGTGCG 470
consensus_4231#1      ------------------------------------------------------------
                                                                                  

consensus_4231#0      GCGTCACGTGGCCGAGGAGGACGAGGACGATGCCGCCGTCTCCGCGACGACGACCCCGCC 530
consensus_4231#1      ------------------------------------------------------------
                                                                                  

consensus_4231#0      ACTGCCGCCGCTGCAGAAGCGGGTGCTGTCGAGGAG 566
consensus_4231#1      ------------------------------------