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Oryza sativa
cluster # 4233 cluster # 4233       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4233#0 length = 1445 sequences # 3  

consensusID : consensus_4233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1445
fasta sequence
                              [CACGCCACCTCCCCTCCCCTCCCCTCCCATGGCAACGCCACCACCGCCACCGCCTTCGCCTCGTCGCCTCCGCCGCTAGCCGTTACCCCCCCACCACCGGCGCCCCCTCACCTTCTCCCCAATGTCGACGGCGGCGCCCGCATCCGCTACGGCGGCTGCGAGCCTCTTCCTCCGCCGGAGTCTCTCCTCCTCCTCCCCTCGCCACGTCTTCCTGCCTCATTGGGTTGCCCCCATTGTCGTCGCGCGCCCCGCTAGGTTATCTGCGGTGCCGGCGAAGCGCGGTGGAGGTGGTGTTGTTGCGGCTGCATCGGCGGCGGCGGGGAGCGCGCAGTTTGGCGCCGGGGACAGTGAGAATCCATACGAGATTTTGGGGATCAGTCCACTTGATGGGTTCGACCAGGTGAAGATGGCCTATAAGCGGAGGCGAAAGGATGCCGAGAGCAACAAAGATGCCGAGCACCTGTTCAAGTTAGAGAGGGCATACGATATGGTCATGATGGAGCAGCTTCAGAACCGGAAGAATGGGGTGGCATATGGATCAATCCAGGTGTCAAAGGACATTAAAT-ATGCTGATAATCAACCAGTGGTTCCTTGGGGGCCTAGATACTCAAGATCCACTGGGAAGGACCTGCGCATTAATATGGCAATATCAGCAACATTTATCATGTATATATCTACCATGGGCCATGCAGACTGGAAGCCCATGCAGTTTTTGTGTTTTGCCTATTTCTATCGAATACTTGACAAACTGAAGGCTACCGAGTCAGCTAGCACTCCTATATACAATGAGTATGGTGAGGTTGAAGGTCGTGGCATACACATGGCAAAACGAGTACTCCGTAGTTTGGGTTTGGTACTTGGATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGCCAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTTGTTTATAACTTCCAGGAATTGATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATAGCAACTTGTGTAATTGTGTTGGATCACCCCTTGGCATTGCAATCTTGATAAACCTGTCTTCATGAGGGCCATGGTCGATAACTTGAGCCTATTCTGCTATGGAATATGAGAGCCCATCAACTATATAAGTGCACTGTTCTTGCATGTTTTACATCGTTCTTACATCTGGAAAATTTTGCAGCTACTGATAAGATGTTCTATCCAATGTTTTGAAACTGAAATTTAGCATGCAAGAGACAGACAGCTAACAAAGCAATGTGTCACATGAAACCTGACGATGCTGAAAATCTAGTTCTAGTGAGTTGTTCCAGCAAAAAGTTAACTGCAATTTTCCTAGAAGTTTCCTTGAGTTTGCAATCTGCTTGCAAGTTCCTTGTATATTTACTGAACAATTACTCTGTGTTGGTGAGTTATGAATTACAACGTCC]

[+] EMBL AK072265             [CACGCCACCTCCCCTCCCCTCCCCTCCCATGGCAACGCCACCACCGCCACCGCCTTCGCCTCGTCGCCTCCGCCGCTAGCCGTTACCCCCCCACCACCGGCGCCCCCTCACCTTCTCCCCAATGTCGACGGCGGCGCCCGCATCCGCTACGGCGGCTGCGAGCCTCTTCCTCCGCCGGAGTCTCTCCTCCTCCTCCCCTCGCCACGTCTTCCTGCCTCATTGGGTTGCCCCCATTGTCGTCGCGCGCCCCGCTAGGTTATCTGCGGTGCCGGCGAAGCGCGGTGGAGGTGGTGTTGTTGCGGCTGCATCGGCGGCGGCGGGGAGCGCGCAGTTTGGCGCCGGGGACAGTGAGAATCCATACGAGATTTTGGGGATCAGTCCACTTGATGGGTTCGACCAGGTGAAGATGGCCTATAAGCGGAGGCGAAAGGATGCCGAGAGCAACAAAGATGCCGAGCACCTGTTCAAGTTAGAGAGGGCATACGATATGGTCATGATGGAGCAGCTTCAGAACCGGAAGAATGGGGTGGCATATGGATCAATCCAGGTGTCAAAGGACATTAAATAATGCTGATAATCAACCAGTGGTTCCTTGGGGGCCTAGATACTCAAGATCCACTGGGAAGGACCTGCGCATTAATATGGCAATATCAGCAACATTTATCATGTATATATCTACCATGGGCCATGCAGACTGGAAGCCCATGCAGTTTTTGTGTTTTGCCTATTTCTATCGAATACTTGACAAACTGAAGGCTACCGAGTCAGCTAGCACTCCTATATACAATGAGTATGGTGAGGTTGAAGGTCGTGGCATACACATGGCAAAACGAGTACTCCGTAGTTTGGGTTTGGTACTTGGATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGCCAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTTGTTTATAACTTCCAGGAATTGATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATAGCAACTTGTGTAATTGTGTTGGATCACCCCTTGGCATTGCAATCTTGATAAACCTGTCTTCATGAGGGCCATGGTCGATAACTTGAGCCTATTCTGCTATGGAATATGAGAGCCCATCAACTATATAAGTGCACTGTTCTTGCATGTTTTACATCGTTCTTACATCTGGAAAATTTTGCAGCTACTGATAAGATGTTCTATCCAATGTTTTGAAACTGAAATTTAGCATGCAAGAGACAGACAGCTAACAAAGCAATGTGTCACATGAAACCTGACGATGCTGAAAATCTAGTTCTAGTGAGTTGTTCCAGCAAAAAGTTAACTGCAATTTTCCTAGAAGTTTCCTTGAGTTTGCAATCTGCTTGCAAGTTCCTTGTATATTTACTGAACAATTACTCTGTGTTGGTGAGTTATGAATTACAAC    ]
[+] EMBL AK099202             [         TCCCCTCCCCTCCCCTCCCATGGCAACGCCACCACCGCCACCGCCTTCGCCTCGTCGCCTCCGCCGCTAGCCGTTACCCCCCCACCACCGGCGCCCCCTCACCTTCTCCCCAATGTCGACGGCGGCGCCCGCATCCGCTACGGCGGCTGCGAGCCTCTTCCTCCGCCGGAGTCTCTCCTCCTCCTCCCCTCGCCACGTCTTCCTGCCTCATTGGGTTGCCCCCATTGTCGTCGCGCGCCCCGCTAGGTTATCTGCGGTGCCGGCGAAGCGCGGTGGAGGTGGTGTTGTTGCGGCTGCATCGGCGGCGGCGGGGAGCGCGCAGTTTGGCGCCGGGGACAGTGAGAATCCATACGAGATTTTGGGGATCAGTCCACTTGATGGGTTCGACCAGGTGAAGATGGCCTATAAGCGGAGGCGAAAGGATGCCGAGAGCAACAAAGATGCCGAGCACCTGTTCAAGTTAGAGAGGGCATACGATATGGTCATGATGGAGCAGCTTCAGAACCGGAAGAATGGGGTGGCATATGGATCAATCCAGGTGTCAAAGGACATTAAAT ATGCTGATAATCAACCAGTGGTTCCTTGGGGGCCTAGATACTCAAGATCCACTGGGAAGGACCTGCGCATTAATATGGCAATATCAGCAACATTTATCATGTATATATCTACCATGGGCCATGCAGACTGGAAGCCCATGCAGTTTTTGTGTTTTGCCTATTTCTATCGAATACTTGACAAACTGAAGGCTACCGAGTCAGCTAGCACTCCTATATACAATGAGTATGGTGAGGTTGAAGGTCGTGGCATACACATGGCAAAACGAGTACTCCGTAGTTTGGGTTTGGTACTTGGATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGCCAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTTGTTTATAACTTCCAGGAATTGATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATAGCAACTTGTGTAATTGTGTTGGATCACCCCTTGGCATTGCAATCTTGATAAACCTGTCTTCATGAGGGCCATGGTCGATAACTTGAGCCTATTCTGCTATGGAATATGAGAGCCCATCAACTATATAAGTGCACTGTTCTTGCATGTTTTACATCGTTCTTACATCTGGAAAATTTTGCAGCTACTGATAAGATGTTCTATCCAATGTTTTGAAACTGAAATTTAGCATGCAAGAGACAGACAGCTAACAAAGCAATGTGTCACATGAAACCTGACGATGCTGAAAATCTAGTTCTAGTGAGTTGTTCCAGCAAAAAGTTAACTGCAATTTTCCTAGAAGTTTCCTTGAGTTTGCAATCTGCTTGCAAGTTCCTTGTATATTTACTGAACAATTACTCTGTGTTGGTGAGTTATGAATTACAACGTCC]
[+] EMBL AK061181             [                                     CCACCACCGCCACCGCCTTCGCCTCGTCGCCTCCGCCGCTAGCCGTTACCCCCCCACCACCGGCGCCCCCTCACCTTCTCCCCAATGTCGACGGCGGCGCCCGCATCCGCTACGGCGGCTGCGAGCCTCTTCCTCCGCCGGAGTCTCTCCTCCTCCTCCCCTCGCCACGTCTTCCTGCCTCATTGGGTTGCCCCCATTGTCGTCGCGCGCCCCGCTAGGTTATCTGCGGTGCCGGCGAAGCGCGGTGGAGGTGGTGTTGTTGCGGCTGCATCGGCGGCGGCGGGGAGCGCGCAGTTTGGCGCCGGGGACAGTGAGAATCCATACGAGATTTTGGGGATCAGTCCACTTGATGGGTTCGACCAGGTGAAGATGGCCTATAAGCGGAGGCGAAAGGATGCCGAGAGCAACAAAGATGCCGAGCACCTGTTCAAGTTAGAGAGGGCATACGATATGGTCATGATGGAGCAGCTTCAGAACCGGAAGAATGGGGTGGCATATGGATCAATCCAGGTGTCAAAGGACATTAAAT ATGCTGATAATCAACCAGTGGTTCCTTGGGGGCCTAGATACTCAAGATCCACTGGGAAGGACCTGCGCATTAATATGGCAATATCAGCAACATTTATCATGTATATATCTACCATGGGCCATGCAGACTGGAAGCCCATGCAGTTTTTGTGTTTTGCCTATTTCTATCGAATACTTGACAAACTGAAGGCTACCGAGTCAGCTAGCACTCCTATATACAATGAGTATGGTGAGGTTGAAGGTCGTGGCATACACATGGCAAAACGAGTACTCCGTAGTTTGGGTTTGGTACTTGGATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGCCAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTTGTTTATAACTTCCAGGAATTGATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATAGCAACTTGTGTAATTGTGTTGGATCACCCCTTGGCATTGCAATCTTGATAAACCTGTCTTCATGAGGGCCATGGTCGATAACTTGAGCCTATTCTGCTATGGAATATGAGAGCCCATCAACTATATAAGTGCA                                                                                                                                                                                                                                                                                                       ]


>consensus_4233#0 CACGCCACCTCCCCTCCCCTCCCCTCCCATGGCAACGCCACCACCGCCACCGCCTTCGCC TCGTCGCCTCCGCCGCTAGCCGTTACCCCCCCACCACCGGCGCCCCCTCACCTTCTCCCC AATGTCGACGGCGGCGCCCGCATCCGCTACGGCGGCTGCGAGCCTCTTCCTCCGCCGGAG TCTCTCCTCCTCCTCCCCTCGCCACGTCTTCCTGCCTCATTGGGTTGCCCCCATTGTCGT CGCGCGCCCCGCTAGGTTATCTGCGGTGCCGGCGAAGCGCGGTGGAGGTGGTGTTGTTGC GGCTGCATCGGCGGCGGCGGGGAGCGCGCAGTTTGGCGCCGGGGACAGTGAGAATCCATA CGAGATTTTGGGGATCAGTCCACTTGATGGGTTCGACCAGGTGAAGATGGCCTATAAGCG GAGGCGAAAGGATGCCGAGAGCAACAAAGATGCCGAGCACCTGTTCAAGTTAGAGAGGGC ATACGATATGGTCATGATGGAGCAGCTTCAGAACCGGAAGAATGGGGTGGCATATGGATC AATCCAGGTGTCAAAGGACATTAAATATGCTGATAATCAACCAGTGGTTCCTTGGGGGCC TAGATACTCAAGATCCACTGGGAAGGACCTGCGCATTAATATGGCAATATCAGCAACATT TATCATGTATATATCTACCATGGGCCATGCAGACTGGAAGCCCATGCAGTTTTTGTGTTT TGCCTATTTCTATCGAATACTTGACAAACTGAAGGCTACCGAGTCAGCTAGCACTCCTAT ATACAATGAGTATGGTGAGGTTGAAGGTCGTGGCATACACATGGCAAAACGAGTACTCCG TAGTTTGGGTTTGGTACTTGGATCAATACTTGCTGTATCCCTGGGCTACACTGGGCTAGC CAATTTTTCTCAGTTTCTTGGGCAGTATATTCCATCTGTTGTTTATAACTTCCAGGAATT GATTGTGACTACAGCTTCATCTGTTTTGCTTTGCATATTGGCGTCGTACTATCGATAGCA ACTTGTGTAATTGTGTTGGATCACCCCTTGGCATTGCAATCTTGATAAACCTGTCTTCAT GAGGGCCATGGTCGATAACTTGAGCCTATTCTGCTATGGAATATGAGAGCCCATCAACTA TATAAGTGCACTGTTCTTGCATGTTTTACATCGTTCTTACATCTGGAAAATTTTGCAGCT ACTGATAAGATGTTCTATCCAATGTTTTGAAACTGAAATTTAGCATGCAAGAGACAGACA GCTAACAAAGCAATGTGTCACATGAAACCTGACGATGCTGAAAATCTAGTTCTAGTGAGT TGTTCCAGCAAAAAGTTAACTGCAATTTTCCTAGAAGTTTCCTTGAGTTTGCAATCTGCT TGCAAGTTCCTTGTATATTTACTGAACAATTACTCTGTGTTGGTGAGTTATGAATTACAA CGTCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)