These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1803 fasta sequence [ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGTGGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCCACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCTTCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCTCTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTTTAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTAAATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGAGCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAATAATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAATGTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGCAACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTGTGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTTTTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTAGAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAAATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGCTTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAACAGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATAAACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAGTATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAGGTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTATGAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTCTGTGAACATAACAATATATCAAGTTAACTTATAACTACTTTACTTATCTTTTTTTCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTTAAAATGGAAG] [+] EMBL AK067445 [ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGTGGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCCACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCTTCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCTCTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTTTAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTAAATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGAGCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAATAATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAATGTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGCAACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTGTGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTTTTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTAGAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAAATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGCTTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAACAGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATAAACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAGTATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAGGTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTATGAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTCTGTGAACATAACAATATATCAAGTTAACTTATAACTACTTTACTTATCTTTTTTTCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTTAAAATGGAAG] consensusID : consensus_4237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 492 fasta sequence [NGNNANCGATTGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCNCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCACAATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGG-ACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA] [+] EMBL C73581 [NGNNANCGATTGACTATGGCTCGGTCACAATCTTCCACGACGCGCGCNCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCCGCTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCACAATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGG ACATAGCATCAACCCTGAAATCTTTATCAA ] [+] EMBL AU101338 [ CTATGGCTCGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCG ACTGCGCTGGCATCATCAAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCACAATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCTGAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGATCCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTCACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTTCTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4237#0 ATCCTCCTACTCTCTCATCTCCCACTCCTCGTCGCTAGATGGGGCGAGGATCTCAGTGGT 60 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GGCGACGAGCTACGCCGCCGCTGCCGTATTTCTCCTCGAGCGGCGGCTGCGCTCCCTTCC 120 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 ACCACCGCAGCCGCCGACTTCCGCTGGGGACCAAACCCTAGTCGCGCGGAGACCCGCGCT 180 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TCGTCTCTTCTGGGAGTTCCGGCGAGTCCTTGTCGATGAAGAAGGACGATGACTATGGCT 240 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 CGGTCACAATCTTCCACGACGCGCGCTCGCCCGAGCACGTCTTCCAGGACTTCTGTCGCC 300 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GCTGCGCTGGCATCATCAAGGCCCTCACCACCGGTATCTCTCTCTTTCTATCTCCTCTCT 360 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 CTATCAATCTATCTATGTGTTTCTGCATTTGTTGGTGTGGAGGTTCAATTCGTCGTTGTT 420 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TAGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCGACCATGGTGAGTA 480 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 AATAATTGTTAGAGTAGTAGCACACATATATAGTAGAACCATTATTTTTTTTTCTCATGA 540 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GCGTTAGTTACATGCTATACTTTTTTATTACGTTAAGATGACATAATTATTGTGAGAAAT 600 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 AATTTTAGTATGCAGAAAAAAAAAATTAGAAGTGTATACATAGACAGAAACCATGCGAAT 660 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GTTGTTATTCTAGCAGCTATGCACTTTTATTATCAGTGCAATGTTTTGTTAGCTATAGGC 720 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 AACTTGCTTTTGGCTGAGCAGCTTTGAATCTATTTGTCATATATGGGCTAGCAGTAACTG 780 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TGCTTATTCACATAGTGAGAACATTGAGCTCATATGCAAAGAATCTGAGATTGTCCTGTT 840 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TTTGTGGTTCCCCTAAAAAATATTACAGTAACATGTTTCTTATCCACATGATAAAAGTTA 900 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GAGCTCAAGTATATCAAATGATTGTGAAGTGAAACAATTTATATTTGTAAACGGGAAAAA 960 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 ATATGGACAAAATCAAATTCTTCTTCCTCCTCCTCTGCACTGCTTAAAAAGAGTGAAAGC 1020 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TTAACTTTACACTGCTCTGCGACCAGGTTACACATATAAATATTCTTTTTTTTCTCGAAC 1080 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 AGCATATACACACTCGCATGTATGTAACTTTAGTATCACAGATCAGAGGGTTACCACATA 1140 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 AACCAAAAAAGATATATTCATCTTTCAGTTTAACTAAAAACTTATAAAAAAACACTTCAG 1200 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 TATCAGGAAAGTGAGTATCTGACACAATTATCCTGATATCTGACAAACAAAAAACATTAG 1260 consensus_4237#1 ------------------------------------------------------------ consensus_4237#0 GTATGCAAAATCAAGTATCATAGGGATTGGGCATCAAGTCTGACTCTTTCATTTCACTAT 1320 consensus_4237#1 -----------------NGNNANCGATTGACTAT--GGCTCGGTCACAATCTTCCACGAC 41 * ***** ** * * ** *** * consensus_4237#0 GAGTGTAATGGTATATATAGTCCTACCGTTTTACTCTTTTATTTTTCCTCTTGCTTTCTC 1380 consensus_4237#1 GCGCGCNCGCCCGAGCAC-GTCTTCCAGGACT--TCTGTCGCCGCTGCGCTGGCATCATC 98 * * * * *** * * * * *** * * * ** ** * ** consensus_4237#0 TGTGAACATAACAATAT-ATCAAGTTAACTTATAACTACTTTAC----TTATCTTTTTT- 1434 consensus_4237#1 AAGGCCCTCACCACCGTTGTTGTGCAGACGTGGGAAAGCTCTACAAGCTGAAGTTGTGCG 158 * * * ** * * * ** * * ** *** * * ** * consensus_4237#0 -TCTAGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATCCGCAC 1493 consensus_4237#1 ACCATGGGAAATTCGTTCATTCACTGTAAGTATCAAGGGATAAAGATTGTGCATNCGCAC 218 * ************************************************* ***** consensus_4237#0 AATGAGCTGTATCACGGATGCTGTAATGAAATGGTTCGATGGGAACATAGCATCAACCCT 1553 consensus_4237#1 AATGAGCTGTATCACGGATGCNGTAATGAAATGGTTCGATGGGA-CATAGCATCAACCCT 277 ********************* ********************** *************** consensus_4237#0 GAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGAT 1613 consensus_4237#1 GAAATCTTTATCAATGCATACGATTGCTATGTCAATATGACGTGTTAGATTTATTTTGAT 337 ************************************************************ consensus_4237#0 CCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTC 1673 consensus_4237#1 CCCAAAATGGACGCCAGGATTGCTGAGATGGATCCAATGGATGATAATGAGGATGGTTTC 397 ************************************************************ consensus_4237#0 ACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTT 1733 consensus_4237#1 ACCGAGTTGGTATGGCAGGATATGTTGATAGACAACTTCTATGAAAACGATGTGATTCTT 457 ************************************************************ consensus_4237#0 CTTTGTGCCTGAATGTTCGTTTATGTATTTATATTTGTTGTCCTTTGTTATCAGCTTTTT 1793 consensus_4237#1 CTTTGTGCCTGAATGTTCGTTTATGTATTTAAAAA------------------------- 492 ******************************* * consensus_4237#0 AAAATGGAAG 1803 consensus_4237#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||