Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4245 cluster # 4245       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4245#0 length = 643 sequences # 3  

consensusID : consensus_4245#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 643
fasta sequence
                              [CTCTAGATCCTTCTCCTTCGCAACAAGAGTCCGCGCGACGCAAGTCGAAG-CACCGCCACCGAGAATGGCGGATCTCACGGGCGGCGGCGGCGGAGGCGGCGGGAGCGCGGGGAGCCGTCGGCCGCTGGGTTTCCTGAAGAACGCGGCGAAGCACAAGCACGGGTTCGTGCAGCTGCTCCTGATGGGGAGCGTCCTCATGATGAGCCTGCGGACCCTGGGCCAGAAGCACCGCCGCCGCGACCTCATCTACGA-CAACGCCGACCTCCGCCGCGAGCACGACGACCTATCCCTCCGGATGCGCGACGTCCAGGACGCCCTGCGCCGCGAGGCCGACGCCGACGAGTCCGGCGCGCTCGCCTCCCATCTCCGCCGCATCTTCGCCGCCCACCCCGCCT-CCACCGATGACAAGTAGCTCGTTGCCCGGCTAATCTCCGCCGCACTCTCAGTCCTCCCCCGCGATGTGTGATCGCTGCGTATTTACTTGTCAGATCTTTGCCCCATGGCGTCTAGGCTTGCACGCGATTTGTTCGTCGAAATGCCGCACAGGCTGTGAGCCTGTACCGAACCGTGAACTCGCTGTTTGAGGCAGAAACGCATTTTTGTTGTTGGACTGATAAGACGTCCTATAATTCTGAGATGCCTG]

[+] EMBL AK106922             [CTCTAGATCCTTCTCCTTCGCAACAAGAGTCCGCGCGACGCAAGTCGAAG CACCGCCACCGAGAATGGCGGATCTCACGGGCGGCGGCGGCGGAGGCGGCGGGAGCGCGGGGAGCCGTCGGCCGCTGGGTTTCCTGAAGAACGCGGCGAAGCACAAGCACGGGTTCGTGCAGCTGCTCCTGATGGGGAGCGTCCTCATGATGAGCCTGCGGACCCTGGGCCAGAAGCACCGCCGCCGCGACCTCATCTACGA CAACGCCGACCTCCGCCGCGAGCACGACGACCTATCCCTCCGGATGCGCGACGTCCAGGACGCCCTGCGCCGCGAGGCCGACGCCGACGAGTCCGGCGCGCTCGCCTCCCATCTCCGCCGCATCTTCGCCGCCCACCCCGCCT CCACCGATGACAAGTAGCTCGTTGCCCGGCTAATCTCCGCCGCACTCTCAGTCCTCCCCCGCGATGTGTGATCGCTGCGTATTTACTTGTCAGATCTTTGCCCCATGGCGTCTAGGCTTGCACGCGATTTGTTCGTCGAAATGCCGCACAGGCTGTGAGCCTGTACCGAACCGTGAACTCGCTGTTTGAGGCAGAAACGCATTTTTGTTGTTGGACTGATAAGACGTCCTATAATTCTGAGATGCCTG]
[+] EMBL AU095343             [                  CGCAACAAGAGTCCGCGCGACGCAAGT NAAGNCACCGCCACCGAGAATGGCGGATCTCACGGGCGGCGGCGGCGGAGGCGGCGGGAGCGCGGGGAGCCGTCGGCCGCTGGGTTTCCTGAAGAACGCGGCGAA CACAAGCACGGGTTCGTGCAGCTGCTCCTGATGGGGAGCGTCCTCATGATGAGCCTGCGGACCCTGNGCCAGAAGCACCGCCGCCGCGACCTCATCTACGAGNAACGCCGACCTCCGCCGCGAGCACGACGACCTATCCCTCCGGATGCGCGACGTCCANGACGCC                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU031376             [                                                                                                                                                                                                                                                                                                                                                                                            CGCCGCCCACCCCGCCTCCCACCGATGACAAGTNGCTCGTTGCCCGGCTAATCTCCGCCGCACTCTCAGTCCTCCCCCGCGATGTGTGATCGCTGCGTATTTACTTGTCAGATCTTTGCCCCATGGCGTCTAGGCTTGCACGCGATTTGTTCGTCGAAATGCCGCACAGGCTGTGAGCCTGTACCGAACCGTGAACTCGCTGTTTGAGGCAGAAACGCATTTTTGTTGTTGGACTGATAAGACGTCCTATAATTCTGAGAaaaa  ]


>consensus_4245#0 CTCTAGATCCTTCTCCTTCGCAACAAGAGTCCGCGCGACGCAAGTCGAAGCACCGCCACC GAGAATGGCGGATCTCACGGGCGGCGGCGGCGGAGGCGGCGGGAGCGCGGGGAGCCGTCG GCCGCTGGGTTTCCTGAAGAACGCGGCGAAGCACAAGCACGGGTTCGTGCAGCTGCTCCT GATGGGGAGCGTCCTCATGATGAGCCTGCGGACCCTGGGCCAGAAGCACCGCCGCCGCGA CCTCATCTACGACAACGCCGACCTCCGCCGCGAGCACGACGACCTATCCCTCCGGATGCG CGACGTCCAGGACGCCCTGCGCCGCGAGGCCGACGCCGACGAGTCCGGCGCGCTCGCCTC CCATCTCCGCCGCATCTTCGCCGCCCACCCCGCCTCCACCGATGACAAGTAGCTCGTTGC CCGGCTAATCTCCGCCGCACTCTCAGTCCTCCCCCGCGATGTGTGATCGCTGCGTATTTA CTTGTCAGATCTTTGCCCCATGGCGTCTAGGCTTGCACGCGATTTGTTCGTCGAAATGCC GCACAGGCTGTGAGCCTGTACCGAACCGTGAACTCGCTGTTTGAGGCAGAAACGCATTTT TGTTGTTGGACTGATAAGACGTCCTATAATTCTGAGATGCCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)