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Oryza sativa
cluster # 4247 cluster # 4247       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4247#0 length = 2016 sequences # 3  

consensusID : consensus_4247#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2016
fasta sequence
                              [CGCGCCGGCGCCGCCCGTCGAACACCATGGCTGCCGCCGCCGCCGCAGCAGCAGTACCCGGCGACGCCAAGCTAGACTCCTTCCTCCAATGGCTCCAGGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGGCCGGCGCCACCGGCGAGGTGGTGATGGTGGTGCCGCTCGATCTCGCCATCACTCCGATGCGGGTGCTGCAGGACCCGCTCGTCGGGCCGCGGTGCCGCGCGCTCTTCGAGGAAGGTGGCGTCGACGACCGCCTCCTCGTCATGCTCTTCCTCATGGTCGAGCGACTCCGCCCTAGCTCCCTCTGGAAGCCGTATTTGGATATGCTTCCAAGCACCTTCGGAAGCTCCATTTGGTTCACCGAAGATGAGCTTGCTGAGTTGGAAGGGACCACACTTCACCGGGCAACCGTGATGCAGAGGAAGTCATTGCAAACCTTATTCGATAATAAGGTTAAAGGTCTGGTTGGGGAGCTCTTAAACGTCGATGAATCAGGAAGCTCAATTGAAGTGCGGTTCGAAGACTTCCTTTGGGCAAACTCAATATTCTGGACTCGAGCATTGAATATACCATTGCCTCGTTTTTATGTTTTTCCGGAATCACTAGACGAAAAGCGGGCCAACATTGGTGATGATTGTGGTGATTCTAGTCTCAGTGCCCCTCAGGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAATCGACTTTTGTAATCATAATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGGATGTCCTTCTTCAATGTACCTTGTACTAGCTGATAAAAGCTTTGTGAAGGCTGAAACAGAGATCTGCATAAATTATGGCAACAAAGGAAATGAGGAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATGATTCATTATCCAGTAGAAGCTCTTCGACAGGTTCAATCTGCTGATATTAAGATGAAGCTACTGGAGATACAGAATGCCGAATTGCGATGTCTTTTACCTCGTAGTTTGCTTGAAAATGGATTTTTTGGTAGCTGTTCTGGTGAAAACAAGGAGAACAAAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGTTCCATCATATATCGAGAAAATTGTTTTCTCTCAGGAATTTATAAGTACCCTGCGTACAATTGCTCTGCAAGAACATGAGCTTGAGCATACCGCTTCATTGCTTGGAGAGATTGGATCTAATGAAGATAGAGA---------TGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAGTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGTCGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTCCCTTTCATGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAAAGAAAAGGCGTGTGTTACTGTAGCCATTATTTC-TTGGTTTTCAGAAGCTAATTCAATTAAGAAACAGAAAATTGCTACTACTAATAAAATGCTTCATGTCTTCTGATGAACTAATTCAGAATGTATGGCTGTACATTGAAGTACAAAGCAAAAAAAAAAAAAAA]

[+] EMBL AK122004             [CGCGCCGGCGCCGCCCGTCGAACACCATGGCTGCCGCCGCCGCCGCAGCAGCAGTACCCGGCGACGCCAAGCTAGACTCCTTCCTCCAATGGCTCCAGGCCAACGGCGCCGACCTCCGCGGCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGGCCGGCGCCACCGGCGAGGTGGTGATGGTGGTGCCGCTCGATCTCGCCATCACTCCGATGCGGGTGCTGCAGGACCCGCTCGTCGGGCCGCGGTGCCGCGCGCTCTTCGAGGAAGGTGGCGTCGACGACCGCCTCCTCGTCATGCTCTTCCTCATGGTCGAGCGACTCCGCCCTAGCTCCCTCTGGAAGCCGTATTTGGATATGCTTCCAAGCACCTTCGGAAGCTCCATTTGGTTCACCGAAGATGAGCTTGCTGAGTTGGAAGGGACCACACTTCACCGGGCAACCGTGATGCAGAGGAAGTCATTGCAAACCTTATTCGATAATAAGGTTAAAGGTCTGGTTGGGGAGCTCTTAAACGTCGATGAATCAGGAAGCTCAATTGAAGTGCGGTTCGAAGACTTCCTTTGGGCAAACTCAATATTCTGGACTCGAGCATTGAATATACCATTGCCTCGTTTTTATGTTTTTCCGGAATCACTAGACGAAAAGCGGGCCAACATTGGTGATGATTGTGGTGATTCTAGTCTCAGTGCCCCTCAGGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAAGTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAATCGACTTTTGTAATCATAATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGGATGTCCTTCTTCAATGTACCTTGTACTAGCTGATAAAAGCTTTGTGAAGGCTGAAACAGAGATCTGCATAAATTATGGCAACAAAGGAAATGAGGAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATGATTCATTATCCAGTAGAAGCTCTTCGACAGGTTCAATCTGCTGATATTAAGATGAAGCTACTGGAGATACAGAATGCCGAATTGCGATGTCTTTTACCTCGTAGTTTGCTTGAAAATGGATTTTTTGGTAGCTGTTCTGGTGAAAACAAGGAGAACAAAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGTTCCATCATATATCGAGAAAATTGTTTTCTCTCAGGAATTTATAAGTACCCTGCGTACAATTGCTCTGCAAGAACATGAGCTTGAGCATACCGCTTCATTGCTTGGAGAGATTGGATCTAATGAAGATAGAGA         TGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAGTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGACGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTCCCTTTCATGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAAAGAAAAGGCGTGTGTTACTGTAGCCATTATTTC TTGGTTTTCAGAAGCTAATTCAATTAAGAAACAGAAAATTGCTACTACTAATAAAATGCTTCATGTCTTCTGATGAACTAATTCAGAATGTATGGCTGTACATTGAAGTACAAAGC               ]
[+] EMBL CA766314             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ggggGTTCTGGTGAAAACAAGGAGAACAAAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGTTCCATCATATATCGAGAAAATTGTTTTCTCTCAGGAATTTATAAGTACCCTGCGTACAATTGCTCTGCAAGAACATGAGCTTGAGCATACCGCTTCATTGCTTGGAGAGATTGGATCTAATGAAGATAGAGAACCTTCCAGTGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTTTGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAGTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGTCGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTCCCTTTCATGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAAAGAAAAGGCGTGTGTTACTGTAGCCATTATTTCTTTGGTTTTCAGGAGCTAATTCAATTAAGAAACAGAAAATTGCTACTACTAATAAAATGCTTCATGTC                                                                ]
[-] EMBL CA761999             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               agagGACGAGA CAACGGGACCAAGTCAAAAGTAAATATTAGGTCGTGCATAGTGTACCGCAGAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGTCGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTCCCTTTCGTGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCAGCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAAAGAAAAGGCGTGTGTTACTGTAGCCATTATTTC TTGGTTTTCAGAAGCTAATTCAATTAAGAAACAGAAAATTGCTACTACTAATAAAATGCTTCATGTCTTTTGATGAACTAATTCAGAATGTATGGCTGTCCATTGAAGTCCAAAAAAAAAAAAAAAAAAAA]


>consensus_4247#0 CGCGCCGGCGCCGCCCGTCGAACACCATGGCTGCCGCCGCCGCCGCAGCAGCAGTACCCG GCGACGCCAAGCTAGACTCCTTCCTCCAATGGCTCCAGGCCAACGGCGCCGACCTCCGCG GCTGCACGATCCGCCGCTGCGGCCGCGAGGGCTACGGCGTCTTCTCCACCGCCGCCGAGG CCGGCGCCACCGGCGAGGTGGTGATGGTGGTGCCGCTCGATCTCGCCATCACTCCGATGC GGGTGCTGCAGGACCCGCTCGTCGGGCCGCGGTGCCGCGCGCTCTTCGAGGAAGGTGGCG TCGACGACCGCCTCCTCGTCATGCTCTTCCTCATGGTCGAGCGACTCCGCCCTAGCTCCC TCTGGAAGCCGTATTTGGATATGCTTCCAAGCACCTTCGGAAGCTCCATTTGGTTCACCG AAGATGAGCTTGCTGAGTTGGAAGGGACCACACTTCACCGGGCAACCGTGATGCAGAGGA AGTCATTGCAAACCTTATTCGATAATAAGGTTAAAGGTCTGGTTGGGGAGCTCTTAAACG TCGATGAATCAGGAAGCTCAATTGAAGTGCGGTTCGAAGACTTCCTTTGGGCAAACTCAA TATTCTGGACTCGAGCATTGAATATACCATTGCCTCGTTTTTATGTTTTTCCGGAATCAC TAGACGAAAAGCGGGCCAACATTGGTGATGATTGTGGTGATTCTAGTCTCAGTGCCCCTC AGGGAACTGGGACTGCCATTACAGCTAAGAATATCAGTGGCAATGATAATCCTAAATCAA GTAATACAGAGTCAATTTGGGTTGAGGGCCTTGTCCCTGGAATCGACTTTTGTAATCATA ATGTAAAGGCGCTGGCAACATGGGAAGTTGATTCCATGGGACATGTTACTGGATGTCCTT CTTCAATGTACCTTGTACTAGCTGATAAAAGCTTTGTGAAGGCTGAAACAGAGATCTGCA TAAATTATGGCAACAAAGGAAATGAGGAACTACTATACCTCTATGGATTTGTAATTGACA ACAATCCTGACGATTATCTCATGATTCATTATCCAGTAGAAGCTCTTCGACAGGTTCAAT CTGCTGATATTAAGATGAAGCTACTGGAGATACAGAATGCCGAATTGCGATGTCTTTTAC CTCGTAGTTTGCTTGAAAATGGATTTTTTGGTAGCTGTTCTGGTGAAAACAAGGAGAACA AAAATAATACAAGTCCTTTTTCTAGTTATAGCTGGAGTGGTCAACGCAAGGTTCCATCAT ATATCGAGAAAATTGTTTTCTCTCAGGAATTTATAAGTACCCTGCGTACAATTGCTCTGC AAGAACATGAGCTTGAGCATACCGCTTCATTGCTTGGAGAGATTGGATCTAATGAAGATA GAGATGATGAGCTCCGGAGTGCTATATGGGAGGTCAGTGGTGATAATGGAGCACTGAGTT TGCTTGTGGATCTTCTTAGAGTCAAAATGACTGAACTTGAAGAGGGCACTGGAACTGAAG CATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAA GTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGTCGTGCATAGTGTACCGCA GAGGCCAAAAGCAGCTGACAAAGTTGTTCTTGAGGGAGGCAGAACATCTTCTGGAGCTGT CGTCAAAAGAAGAGAACTAAAGAAAGCAAGGAATGAAGGATCTCATCGGGTGCGCATTTC CCTTTCATGCTCTCTAAATTACAGCCGTTAGCCATAGCCAATAGTTATGCTACCAATTCA GCTGTTTTCTTCTGTAGTAGTAGCGTAACCCTTTTCAGTGATTTTACTGAAAAGAAAAGG CGTGTGTTACTGTAGCCATTATTTCTTGGTTTTCAGAAGCTAATTCAATTAAGAAACAGA AAATTGCTACTACTAATAAAATGCTTCATGTCTTCTGATGAACTAATTCAGAATGTATGG CTGTACATTGAAGTACAAAGCAAAAAAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)