These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_425#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1356 fasta sequence [GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGGCGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGATCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCGTCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGATGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTGAATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGTGACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGTGCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTTGAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGATGGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTTGGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAACAGAGAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG] [+] EMBL AK065492 [GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGGCGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGATCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCGTCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGATGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTGAATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGTGACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGTGCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTTGAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGATGGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTTGGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAACAGAGAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG] consensusID : consensus_425#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [AACAGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA] [-] EMBL CA760074 [AACAGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAAATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAACAAAGTCTTGGACCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTGTTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATGTAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGCAATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAGTGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGATGAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTGTAACAGTAGCTAGTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGATAGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGGACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTAATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_425#0 GGCGGCGGCGGCCTCTCCACCGGCCGGAAGATGGTCCCGTCGTCGAGCTGGGCCGAGCGG 60 consensus_425#1 ------------------------------------------------------------ consensus_425#0 CGCGGCTCGTGCGCGACGGCCTCTTCTTCTCCCCCTGCCCCATCGCCGCTCTTCACAGGA 120 consensus_425#1 ------------------------------------------------------------ consensus_425#0 TCGCGGCGTGGCGGAGCAGGGGCGCCCTCCCGGTCGCCGTAGATGTGGCCGCGGCGTTCG 180 consensus_425#1 ------------------------------------------------------------ consensus_425#0 TCGAGATACGGCTGCGGGAATCGGAATCCCTTCTTCTTCCCGGAATGTGATGGCTGTGGA 240 consensus_425#1 ------------------------------------------------------------ consensus_425#0 TGATCCGCTGGAGTCTGAAGAGATGTCGGCGATGCTGTGTAGTATGGCAATCATGAGGTG 300 consensus_425#1 ------------------------------------------------------------ consensus_425#0 AATCCAATGCTTGAATGCCAGCAAAAATGGAAATTTATATTCCCTTGTTCTGTGGCTTGT 360 consensus_425#1 ------------------------------------------------------------ consensus_425#0 GACAAATATAAAAGAAATAAAGGATTCAGGCTGCATTGGACTTGTTCACGAGATAGGAGT 420 consensus_425#1 ------------------------------------------------------------ consensus_425#0 GCTCTCTTCAGACAGAAATGTAGTCCAATGTTCCTGTCCAGCAAAACTTCTGCAGAAGTT 480 consensus_425#1 ------------------------------------------------------------ consensus_425#0 GAGTTTGTCCACTATAGGTGAAAGATGTCTCATAGATGCAGCACTACTGCTGTTTGAGAT 540 consensus_425#1 ------------------------------------------------------------ consensus_425#0 GGCCAGCAATAATGTGAAAGAGAAACTGAGGAAGCTTCTTATGTTATCCCTGGGAAAGTT 600 consensus_425#1 ------------------------------------------------------------ consensus_425#0 GGCTAGAATTTCTATCCTCACGGAGTCCTCCAAAGAAATAGAATCAGCTGACAGGGCAAC 660 consensus_425#1 ---------------------------------------------------------AAC 3 *** consensus_425#0 AGAGAA-GCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAA 719 consensus_425#1 AGAGAAAGCTGGAAATGTTCAAGTCACAGTTGAAACAGAAGGATGTATGTTTGGCAGAAA 63 ****** ***************************************************** consensus_425#0 ATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAA 779 consensus_425#1 ATGGCAACGGGGGATCATTGAACACAATCTTGTTGGAGAAACGTAGCAGATGGTCTATAA 123 ************************************************************ consensus_425#0 CAAAGTCTTGGACCCCCTGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTG 839 consensus_425#1 CAAAGTCTTGGACCCC-TGTGCGATAGGAATGGTACCATGCTCATTTAGTTCAACGGCTG 182 **************** ******************************************* consensus_425#0 TTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATG 899 consensus_425#1 TTCTTCCGACACTTGATGTCATCGATCATGAATTGAAAGATGACACATTGGAGCAACATG 242 ************************************************************ consensus_425#0 TAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGC 959 consensus_425#1 TAAATTTTGAGCTTGATGACCATACTGAAAGGGCTGGCTATCATTCTCATCCTGAGAAGC 302 ************************************************************ consensus_425#0 AATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAG 1019 consensus_425#1 AATTGGATGTTGAATGCATTCCGGCAATATCTGAACGTGAGATTTCAGATATGTCAGAAG 362 ************************************************************ consensus_425#0 TGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGAT 1079 consensus_425#1 TGACCTTTCCTCTGAAAGTCTGAAGGGTAAGTTACTGGTTGGTGGCGTGTGGAAGGTGAT 422 ************************************************************ consensus_425#0 GAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAATTTTGTTGTAACAGTAGCTA 1139 consensus_425#1 GAGTGAAGGGAGCTACTCTTGATTAAGTCAAAGATGAAAAATTTG---TAACAGTAGCTA 479 **************************************** **** ************ consensus_425#0 GTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGAT 1199 consensus_425#1 GTTAAGTTGTGTCATGTGTCCTCTTAAACCAGCAATTTCAGGCTGTTACGAACGGCGGAT 539 ************************************************************ consensus_425#0 AGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGG 1259 consensus_425#1 AGTTCTATCTTAAAGCTGGAAAAAAAGAGAGGGAAATATATGACCAGTACTTAAACTTGG 599 ************************************************************ consensus_425#0 ACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTA 1319 consensus_425#1 ACTAGGGTGTCATTTAGGTCTATGAACTTATAATGCACATCCATTTCCTATTTTGGTTTA 659 ************************************************************ consensus_425#0 ATATATAATCTGAGGTTCAAAGTACAAGTGACTCAGG 1356 consensus_425#1 ATATATAATCTGAGGTTCAAAGTAAAAAAAAAAAAAA 696 ************************ ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||