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Oryza sativa
cluster # 4250 cluster # 4250       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4250#0 length = 2031 sequences # 3  

consensusID : consensus_4250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2031
fasta sequence
                              [TCATTCCGTTTTTCCCGCGAAATCCTTCTTCTCGTCGGGCGATTCGCCGCTAATATCAACTCTATCCTTCTCCAAATTTTTCTTTTTTTTTCCCAGTGGTGGTGTTACACTGACAGCTCGCTCGCCAGTTGACGCTTCCACGGAAGGCGCAGCAGAGTAGCCGGCTAAGCCGCCGCCGCCATGCGTTCCTCCGCCCGCGGCCGCGGCCGCCTCCTGCTGCTCCTCCTCCTCGCCGCCGGTGCGCCGGCGGCGCCGGCGGCGGCGGAGGTGGCCACCTGCCAGGCGTGGCTGGTGCAGTCCATCCCCACCGACATGCCCCACCTGCGGCGCGTCCCCGGTGTCCTCTCCACTGCGGATGTGCTGCAATGGCTATCTGGGAATGCTACAAAAAGCCTGGATGTCCTTGCTCAATACTGGCAGTTCTTAGCTCAACCTAAGAACCCTAAATCAGGCGATTATGGGTACTCTGAGAGTGAAATGGTAAGGTTCGGAGCTGACAAGGGGCAACGGGTTTATAAGGCACTGGAGAAAGCTGCAGATCGTAAGATCAAAATCACGATTGTGCTACCCTCTGGATTTGCGCCTGATTTTGACAAAGAGAGTGCTGATCTCCCTGCACGAAGACCAAATGTACAAAATGTAACCTTACTTTTTGGTGATTGGTGGGGCTCTGGTGTTGTGCATGCAAAAGTGTGGATATCTGACAAAAAGGATGTGTATATTGGATCTGCAAACAACGATTGGAAATCCCTTAGTCAGGTGAAAGAGCTTGGGATTTATTTTGCTGATTGTCCACAGATAGCAAAAACTGTGGAAATATACTTTCAAAATCTTTGGAAACTTTCAACTCTCAACTCAACTGCTTACACCAAAGTTGCCTGGGACAAGCAATGGCAAGCTTTTAGAAAAGTGCCATGCTGGTCACATTTTCTAAAACCAGAAGAAAGATGCAGGTCACCTCTTCCACCCTCTGTTGATGTCCCATATGTGGATGGCTATCCGTCACTTGCCAATCCTAAAATGCTTGATTTTTCATTTGAAACCCCTGGGTATAAGAGCTCTACTAAGGAACACCACTTGAGCTATCTTTCATATGCTCCTCCTGAGCTTTCATTTGACAAGTTCCAGGCAGATGAGCAGGGTTGGCTTGACACCATCAAGTCTGTCAAATTCGGGGGAGTGGTGCGGATAAGTACTATGGACTGGCTGGGACAGTCGCAATATGCAACTCAAACAGTGTTCTGGCCATCCTTGTCATCAGCAATATCAGAGGTAATATTCTCAAAGAATGCAACTGTAAGGATCCTCGTAGCCTACTGGACGCACTTCATCCCGAACACCGAAAAGTACTTGAAGAGCCTTCTATACTCAAACATCCTCTGCACATCTTCCAGCTACAACCACTGCATGGGCAAGGTTGAGATCAAATACTATGTGGTTCCTGGGTACAACAAGACCGGACCTGCATTGGCGCAAGGCGCTGCGACGGGGAATCGCTACCCTGATTTCACCCGGGTGAACCATGGCAAGTACGCCGTCAGCGATGTGAGGGCGAACATCGGCACCAGCAACCTCATCTGGGATTACTTCTACACCACAGCCGGTGTCAGCTTCGGAACATACAGCCACGCCATTGTTTCGCAGCTGCAGGATATCTTTGATGCAGATTGGTTTTCTCCATACACTGTACCTGTAAAACCACTGGAAGCATCTGCATAATATCAGGTGATCATTTCAGTTAGGAGTAGGTCTTTTTTCACTTATTG-CCAATAAAGAACGTCACGGAGTGAGCT-GGACAGTTGCAGGACAGAAA-CG-CCATTCAA-CAGGAG-ATCACATGCATCAACAACATTA-GGA-GTTTCACT-GCTC-GTTTTTGTCAAGAATCTGCAGATATTTTTTTTTC-GTTTCTCCAATAAGTTAGTTTACAGAAATTTTACTTCCCAGATGAGAAGTGTAAACTTTCAGAAAACATTGTACAAGTGTAAATTTTACTACCTCTTGAGCATTGCCTCATCTAATCAATTTGAGAGCATC]

[+] EMBL CB676139             [TCATTCCGTTTTTCCCGCGAAATCCTTCTTCTCGTCGGGCGATTCGCCGCTAATATCAACTCTATCCTTCTCCAAATTTTTCTTTTTTTTTCCCAGTGGTGGTGTTACACTGACAGCTCGCTCGCCAGTTGACGCTTCCACGGAAGGCGCAGCAGAGTAGCCGGCTAAGCCGCCGCCGCCATGCGTTCCTCCGCCCGCGGCCGCGGCCGCCTCCTGCTGCTCCTCCTCCTCGCCGCCGGTGCGCCGGCGGCGCCGGCGGCGGCGGAGGTGGCCACCTGCCAGGCGTGGCTGGTGCAGTCCATCCCCACCGACATGCCCCACCTGCGGCGCGTCCCCGGTGTCCTCTCCACTGCGGATGTGCTGCAATGGCTATCTGGGAATGCTACAAAAAGCCTGGATGTCCTTGCTCAATACTGGCAGTTCTTAGCTCAACCTAAGAACCCTAAATCAGGCGATTATGGGTACTCTGAGAGTGAAATGGTAAGGTTCGGAGCTGACAAGGGGCAACGGGTTTATAAGGCACTGGAGAAAGCTGCAGATCGTAAGATCAAAATCACGATTGTGCTACCCTCTGGATTTGCGCCTGATTTTGACAAAGAGAGTGCTGATCTCCCTGCACGAAGACCAAATGTACAAAATGTAACCTTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK122015             [                                                                                                      TGTTACACTGACAGCTCGCTCGCCAGTTGACGCTTCCACGGAAGGCGCAGCAGAGTAGCCGGCTAAGCCGCCGCCGCCATGCGTTCCTCCGCCCGCGGCCGCGGCCGCCTCCTGCTGCTCCTCCTCCTCGCCGCCGGTGCGCCGGCGGCGCCGGCGGCGGCGGAGGTGGCCACCTGCAAGGCGTGGCTGGTGCAGTCCATCCCCACCGACATGCCACACCTGCGGCGCGTCCCCGGTGTCCTCTCCACTGCGGATGTGCTGCAATGGCTATCTGGGAATGCTACAAAAAGCCTGGATGTCCTTGCTCAATACTGGCAGTTCTTAGCTCAACCTAAGAACCCTAAATCAGGCGATTATGGGTACTCTGAGAGTGAAATGGTAAGGTTCGGAGCTGACAAGGGGCAACGGGTTTATAAGGCACTGGAGAAAGCTGCAGATCGTAAGATCAAAATCAGGATTGTGCAACACTCTGGATTTGCGCCTGATTTTGACAAAGAGAGTGCTGATCTCGCTGCAGGAAGACCAAATGTACAAAATGTAACCTTACTTTTTGGTGATTGGTGGGGCTCTGGTGTTGTGCATGCAAAAGTGTGGATATCTGACAAAAAGGATGTGTATATTGGATCTGCAAACAACGATTGGAAATCCCTTAGTCAGGTGAAAGAGCTTGGGATTTATTTTGCTGATTGTCCACAGATAGCAAAAACTGTGGAAATATACTTTCAAAATCTTTGGAAACTTTCAACTCTCAACTCAACTGCTTACACCAAAGTTGCCTGGGACAAGCAATGGCAAGCTTTTAGAAAAGTGCCATGCTGGTCACATTTTCTAAAACCAGAAGAAAGATGCAGGTCACCTCTTCCACCCTCTGTTGATGTCCCATATGTGGATGGCTATCCGTCACTTGCCAATCCTAAAATGCTTGATTTTTCATTTGAAACCCCTGGGTATAAGAGCTCTACTAAGGAACACCACTTGAGCTATCTTTCATATGCTCCTCCTGAGCTTTCATTTGACAAGTTCCAGGCAGATGAGCAGGGTTGGCTTGACACCATCAAGTCTGTCAAATTCGGGGGAGTGGTGCGGATAAGTACTATGGACTGGCTGGGACAGTCGCAATATGCAACTCAAACAGTGTTCTGGCCATCCTTGTCATCAGCAATATCAGAGGTAATATTCTCAAAGAATGCAACTGTAAGGATCCTCGTAGCCTACTGGACGCACTTCATCCCGAACACCGAAAAGTACTTGAAGAGCCTTCTATACTCAAACATCCTCTGCACATCTTCCAGCTACAACCACTGCATGGGCAAGGTTGAGATCAAATACTATGTGGTTCCTGGGTACAACAAGACCGGACCTGCATTGGCGCAAGGCGCTGCGACGGGGAATCGCTACCCTGATTTCACCCGGGTGAACCATGGCAAGTACGCCGTCAGCGATGTGAGGGCGAACATCGGCACCAGCAACCTCATCTGGGATTACTTCTACACCACAGCCGGTGTCAGCTTCGGAACATACAGCCACGCCATTGTTTCGCAGCTGCAGGATATCTTTGATGCAGATTGGTTTTCTCCATACACTGTACCTGTAAAACCACTGGAAGCATCTGCATAATATCAGGTGATCATTTCAGTTAGGAGTAGGTCTTTTTTCACTTATTG CCAATAAAGAACGTCACGGAGTGAGCT GGACAGTTGCAGGACAGAAA CG CCATTCAA CAGGAG ATCACATGCATCAACAACATTA GGA GTTTCACT GCTC GTTTTTGTCAAGAATCTGCAGATATTTTTTTTTC GTTTCTCCAATAAGTTAGTTTACAGAAATTTTACTTCCCAGATGAGAAGTGTAAACTTTCAGAAAACATTGTACAAGTGTAAATTTTACTACCTCTTGAGCATTGCCTCATCTAATCAATTTGAGAGCATC]
[+] EMBL AU166625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCTACACCACAGCCGGTGTCAGCTTCGGAACANACAGCCCCGCCATTGTTTCGCAGCTGCAGGATATCTTTGATGCAGATTGGTTTTCTCCAAACACTGNACCTGTAAAACCACTGGAAGCATCTGCATAAAATCAGGTGATCATTTCAGTTAGGAGTAGGTCTTTTTTCACTTATTGCCCAAAAAAGAACGTCTCGGAGTGAGCTGGGNCAGGTTCAGGNCANAAACCGNCCATCNAACCAGGAGAATCCCATGCATCAACAACATTAGGGAGGTTTCACTGGCTCGGTTTTTGTCAAGAATCTGCAGATATTTTTTTTTCGGTTTCTCCAATAAGTTAG TTACAGAAATTTTACTTCCCAGATGAGAAGTGTAAACTTTCAGAAAACATTGTACAAGTGTAAATTTTACTACCTCTTGAGCATTGCCTCATCTAATCAAaaaaaaa     ]


>consensus_4250#0 TCATTCCGTTTTTCCCGCGAAATCCTTCTTCTCGTCGGGCGATTCGCCGCTAATATCAAC TCTATCCTTCTCCAAATTTTTCTTTTTTTTTCCCAGTGGTGGTGTTACACTGACAGCTCG CTCGCCAGTTGACGCTTCCACGGAAGGCGCAGCAGAGTAGCCGGCTAAGCCGCCGCCGCC ATGCGTTCCTCCGCCCGCGGCCGCGGCCGCCTCCTGCTGCTCCTCCTCCTCGCCGCCGGT GCGCCGGCGGCGCCGGCGGCGGCGGAGGTGGCCACCTGCCAGGCGTGGCTGGTGCAGTCC ATCCCCACCGACATGCCCCACCTGCGGCGCGTCCCCGGTGTCCTCTCCACTGCGGATGTG CTGCAATGGCTATCTGGGAATGCTACAAAAAGCCTGGATGTCCTTGCTCAATACTGGCAG TTCTTAGCTCAACCTAAGAACCCTAAATCAGGCGATTATGGGTACTCTGAGAGTGAAATG GTAAGGTTCGGAGCTGACAAGGGGCAACGGGTTTATAAGGCACTGGAGAAAGCTGCAGAT CGTAAGATCAAAATCACGATTGTGCTACCCTCTGGATTTGCGCCTGATTTTGACAAAGAG AGTGCTGATCTCCCTGCACGAAGACCAAATGTACAAAATGTAACCTTACTTTTTGGTGAT TGGTGGGGCTCTGGTGTTGTGCATGCAAAAGTGTGGATATCTGACAAAAAGGATGTGTAT ATTGGATCTGCAAACAACGATTGGAAATCCCTTAGTCAGGTGAAAGAGCTTGGGATTTAT TTTGCTGATTGTCCACAGATAGCAAAAACTGTGGAAATATACTTTCAAAATCTTTGGAAA CTTTCAACTCTCAACTCAACTGCTTACACCAAAGTTGCCTGGGACAAGCAATGGCAAGCT TTTAGAAAAGTGCCATGCTGGTCACATTTTCTAAAACCAGAAGAAAGATGCAGGTCACCT CTTCCACCCTCTGTTGATGTCCCATATGTGGATGGCTATCCGTCACTTGCCAATCCTAAA ATGCTTGATTTTTCATTTGAAACCCCTGGGTATAAGAGCTCTACTAAGGAACACCACTTG AGCTATCTTTCATATGCTCCTCCTGAGCTTTCATTTGACAAGTTCCAGGCAGATGAGCAG GGTTGGCTTGACACCATCAAGTCTGTCAAATTCGGGGGAGTGGTGCGGATAAGTACTATG GACTGGCTGGGACAGTCGCAATATGCAACTCAAACAGTGTTCTGGCCATCCTTGTCATCA GCAATATCAGAGGTAATATTCTCAAAGAATGCAACTGTAAGGATCCTCGTAGCCTACTGG ACGCACTTCATCCCGAACACCGAAAAGTACTTGAAGAGCCTTCTATACTCAAACATCCTC TGCACATCTTCCAGCTACAACCACTGCATGGGCAAGGTTGAGATCAAATACTATGTGGTT CCTGGGTACAACAAGACCGGACCTGCATTGGCGCAAGGCGCTGCGACGGGGAATCGCTAC CCTGATTTCACCCGGGTGAACCATGGCAAGTACGCCGTCAGCGATGTGAGGGCGAACATC GGCACCAGCAACCTCATCTGGGATTACTTCTACACCACAGCCGGTGTCAGCTTCGGAACA TACAGCCACGCCATTGTTTCGCAGCTGCAGGATATCTTTGATGCAGATTGGTTTTCTCCA TACACTGTACCTGTAAAACCACTGGAAGCATCTGCATAATATCAGGTGATCATTTCAGTT AGGAGTAGGTCTTTTTTCACTTATTGCCAATAAAGAACGTCACGGAGTGAGCTGGACAGT TGCAGGACAGAAACGCCATTCAACAGGAGATCACATGCATCAACAACATTAGGAGTTTCA CTGCTCGTTTTTGTCAAGAATCTGCAGATATTTTTTTTTCGTTTCTCCAATAAGTTAGTT TACAGAAATTTTACTTCCCAGATGAGAAGTGTAAACTTTCAGAAAACATTGTACAAGTGT AAATTTTACTACCTCTTGAGCATTGCCTCATCTAATCAATTTGAGAGCATC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)