These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1733 fasta sequence [CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGATGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCTTCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGAGATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCTGTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCACCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGAGTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG] [+] EMBL AK108060 [CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGATGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCTTCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGAGATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCTGTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCACCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTT ] [-] EMBL CB682411 [ CGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGTGCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGAAGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTACGGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTTCAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGCTGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTTCTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCCAGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTCTGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTTCTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGATGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATCAAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGCTCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGAGTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG] consensusID : consensus_4252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence [CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCCCTCCGTAGCCTTGTGCCCGGGATATCCGAATCCGTTATCGCAATCTTCAGACAGCCTCCCTTCTTCCAACCCCTCATCGAAATCAAACAT] [+] EMBL CB682410 [CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCCCGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGATTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGGTCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATGAGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGGTGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCGCCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCCGCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAGTGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGCGGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCAGCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCCCTCCGTAGCCTTGTGCCCGGGATATCCGAATCCGTTATCGCAATCTTCAGACAGCCTCCCTTCTTCCAACCCCTCATCGAAATCAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4252#0 CGCGGCCTCCTCCTCCTCCACCACCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCC 60 consensus_4252#1 -----------------------CCGCCGCGCCGTCGCGTTCGCCTTTTTTCCTCCTTCC 37 ************************************* consensus_4252#0 CGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGA 120 consensus_4252#1 CGGACCTCGTGCGCTCCCACCACCACCACCCCGCGGCTTCGCTCGCGCCACCGCCACTGA 97 ************************************************************ consensus_4252#0 TTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGG 180 consensus_4252#1 TTCGCCGGAGAGTTGCTGTTCCCTTCGTGATTTCGTCGGCGGTGGCGGCGGCGGGGGTGG 157 ************************************************************ consensus_4252#0 TCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATG 240 consensus_4252#1 TCTCCTGTTGCTGTACAGACCAGCATCGTTGGGGGGAATCGGATGAGATGAGATGAGATG 217 ************************************************************ consensus_4252#0 AGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGG 300 consensus_4252#1 AGATGCGGGGGTGGTGGTGATGGAGGCGCTCTCCCGGACCGAGCGTGTAGGAGGAGGAGG 277 ************************************************************ consensus_4252#0 TGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCG 360 consensus_4252#1 TGGAGCCATGGTTGAAGTGGCCTTCGCTTCGTCCGCCGGATCCTCCGCCGCGGCCCCGCG 337 ************************************************************ consensus_4252#0 CCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCC 420 consensus_4252#1 CCGCCTTCGTGGGGAGCTCGTCGTCAGGGACGCTATTCCGTATGCCGGGGTGGCTCCTCC 397 ************************************************************ consensus_4252#0 GCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAG 480 consensus_4252#1 GCCGCCCGCGCTGCCGCTGCCGCAGCCGCAGCTGCAGCCGCAGGTGCAGGCTACGACGAG 457 ************************************************************ consensus_4252#0 TGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGC 540 consensus_4252#1 TGGGGGCGGCGGCGGGGGGAAGATTAGCCCCGCGGTGCTGTTCATCATCGTGATTCTCGC 517 ************************************************************ consensus_4252#0 GGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCA 600 consensus_4252#1 GGTGGTGTTCTTCATCTCCGGCTTGCTCCACCTCCTGGTGCGGCTACTCATGAAGAAGCA 577 ************************************************************ consensus_4252#0 GCATCGCCGCGGAGGAGGAGGGGGTGCGGCGGCCGGGGTGTCGCGGTCGGCCGCCGGGGA 660 consensus_4252#1 GCATCCCCGCCGAGGAGGAGGGGGTGCGCATCCC----CTCCGTAGCCTTGTGCCCGGGA 633 ***** **** ***************** ** ** * * *** **** consensus_4252#0 TGACGCGGGGGGAGGAGGGGACGCGGCGCTGCAGCGGCAGCTGCAGCAGCTGTTCCACCT 720 consensus_4252#1 TATCC-------------GAATCCGTTATCGCAAT-----CTTCAGACAGCCTCCCTTCT 675 * * * * ** *** ** *** * ** ** consensus_4252#0 TCACGACTCCGGGCTGGACCAGGCGTTCATCGACGCGCTGCCGGTGTTCGCCTACCGGGA 780 consensus_4252#1 TCCAACCCCTCATCGAAATCAAACAT---------------------------------- 701 ** * * * * ** * * consensus_4252#0 GATCGTCGTGGGCGGCGGCGGCGACGGCGACAAGGAGCCCTTCGACTGCGCGGTGTGCCT 840 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GTGCGAGTTCGACGCCGAGGACCGCCTCCGGCTGCTGCCGCTGTGCGGGCACGCCTTCCA 900 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CCTGCATTGCATCGACACATGGCTGCTGTCCAACTCCACCTGCCCGCTCTGTCGCGGGGT 960 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GCTCTTTGTCCCTGGGCTCACGGAGAACAATCCGATGTTTGATTTCGATGAGGGGTTGGA 1020 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 AGAAGGGAGGCTGTCTGAAGATTGCGATAACGGATTCGGATATCCCGGGCACAAGGCTAC 1080 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GGAGGGGATGCAGACGCCAGGGACTGAGAAGAGGGTGTTCCCTGTGAGGCTTGGGAAGTT 1140 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CAAGAATGTCGGGACCCAGGGCGCTGTCGAAGGCGGTGGCATCGGCAATGCCAATGGTGC 1200 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 TGTCTTGAGGAGAGAGGAAGGGGAGAGCAGCAGCAGCAGCTTGGATGCAAGGAGATGCTT 1260 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CTCAATGGGGACTTACCAGTATGTTCTAGGGACCTCAGAGCTCAGGGTGTCTCTCCAGCC 1320 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 AGACCGAATTAGAAATGGCGGCGGCGGTGTGACGAGGGCAAGGCCGACAGGGTTAAGCTC 1380 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 TGTCAATGCTGAGATCATGGAGGGGAAGAAGATATGCGCACGGAACAAAGGGGAGAGCTT 1440 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 CTCTGTGTCGAAGATTTGGCAGTGGTCTAATCTGAAGGGCAAGCTACCTACTGGCTCAGA 1500 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 TGAATGTTCGGAAGCAGGGAGCCTTCCATGGATGAAGAGAGGTGGCATTGGGGATACATC 1560 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 AAATATGTGACTGTAGTCTGTATTATGATAGTGGCTAATCTTTTCTCTTGTTGGTGCTGC 1620 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 TCACTTAATCTCTTACCTATAGTTATCTTGACTTTTTTCAGTCTGATTGCTTAGTGCTGA 1680 consensus_4252#1 ------------------------------------------------------------ consensus_4252#0 GTTTGATTGAAGGGCATTAATCCCATGGAGCGATAATTTCTCAAAAAAAAAGG 1733 consensus_4252#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||