cluster # 426

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Oryza sativa
cluster # 426 cluster # 426 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_426#0 length = 760 sequences # 1

consensus_426#1 length = 697 sequences # 1

consensusID : consensus_426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence

                              [GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGCCTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAATGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACAAATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATCCTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAATTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT]

[+] EMBL AK108226             [GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGCCTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAATGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACAAATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATCCTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAATTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT]




>consensus_426#0
GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGC
CTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAA
TGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACA
AATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATC
CTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGA
CCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAA
TTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCAC
ATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGC
CAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCT
GGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGT
GATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTT
TCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATA
TTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT

consensusID : consensus_426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAGCGGCCACGCCAATGCGAGCGTACACGGCGACCGCGCGGCGAGCGCCAGCGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATCCTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAATTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA]

[-] EMBL CA760071             [CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAGCGGCCACGCCAATGCGAGCGTACACGGCGACCGCGCGGCGAGCGCCAGCGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATCCTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAATTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA]




>consensus_426#1
CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAGCGGCCA
CGCCAATGCGAGCGTACACGGCGACCGCGCGGCGAGCGCCAGCGGCCGCTGGCGGGGGCC
GGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATCCTGCTCCTCCCTCCGCGAGGACA
TCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGAC
CGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAATTTTTTCCCCCCTGGTCTTCTAC
CAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGT
TGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTAT
CACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCT
TTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGAT
CCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCAT
TTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGA
GATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_426#0      GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGC 60
consensus_426#1      ------------------------------------------------------------
                                                                                 

consensus_426#0      CTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAA 120
consensus_426#1      ------CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAG 54
                           **** * *    *  *  * *  **       ** *      *     * * * 

consensus_426#0      TGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACA 180
consensus_426#1      CGGC---------CACGCCAATGCGAGCGTACACGGCGACCGC----GCGGCGAGCGCCA 101
                      * *          **     ** **  * *  * **  *  *    ** * ** *  **

consensus_426#0      AATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATC 240
consensus_426#1      G----CGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATC 157
                          **  **  *  *  * *  **  *   ** ******* ****  **** ******

consensus_426#0      CTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGA 300
consensus_426#1      CTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGA 217
                     ************** **************** ****************************

consensus_426#0      CCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAA 360
consensus_426#1      CCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAA 277
                     **************************************** ****** ************

consensus_426#0      TTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCAC 420
consensus_426#1      TTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCAC 337
                     ****** *****************************************************

consensus_426#0      ATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGC 480
consensus_426#1      ATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGC 397
                     ************************************************************

consensus_426#0      CAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCT 540
consensus_426#1      CAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCT 457
                     ************************************************************

consensus_426#0      GGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGT 600
consensus_426#1      GGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGT 517
                     ************************************************************

consensus_426#0      GATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTT 660
consensus_426#1      GATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTT 577
                     ************************************************************

consensus_426#0      TCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATA 720
consensus_426#1      TCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATA 637
                     ************************************************************

consensus_426#0      TTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT-------------------- 760
consensus_426#1      TTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA 697
                     ****************************************