These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGCCTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAATGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACAAATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATCCTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAATTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT] [+] EMBL AK108226 [GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGCCTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAATGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACAAATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATCCTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAATTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT] consensusID : consensus_426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAGCGGCCACGCCAATGCGAGCGTACACGGCGACCGCGCGGCGAGCGCCAGCGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATCCTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAATTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA] [-] EMBL CA760071 [CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAGCGGCCACGCCAATGCGAGCGTACACGGCGACCGCGCGGCGAGCGCCAGCGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATCCTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGACCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAATTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCACATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGCCAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCTGGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGTGATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTTTCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATATTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_426#0 GACGGAAGCACCCACCGAGTCCTACTGGGTGGTGAAGTGCGACGCCGGCGCCGCCCCGGC 60 consensus_426#1 ------------------------------------------------------------ consensus_426#0 CTCCGGCGGCGGCGACTTCTTGAGCTCCTGCTTCACTTGCAAGAAGAAGCTGGAGGGAAA 120 consensus_426#1 ------CGGCCGGGCAGCCCCGCACCCAGGCCATGTCCGCGAACGCCGGGCATCGCGCAG 54 **** * * * * * * ** ** * * * * * consensus_426#0 TGACATTTACATTTACCGTGGTGAGAAAGCATTCTGCAGCGCCAATTGCCGGGACCAACA 180 consensus_426#1 CGGC---------CACGCCAATGCGAGCGTACACGGCGACCGC----GCGGCGAGCGCCA 101 * * ** ** ** * * * ** * * ** * ** * ** consensus_426#0 AATCCCGATCGAAGAGGAAGCCGAGAACAACACCACCATCGTCTCCTCCCCGCCCTCATC 240 consensus_426#1 G----CGGCCGCTGGCGGGGGCCGGAGGAGGGCCCCCATCGTATCCTGGCCGCGCTCATC 157 ** ** * * * * ** * ** ******* **** **** ****** consensus_426#0 CTGCTCCTCCCTCCACGAGGACATCTTCATGGCCGGCATGTTCGTCGCGACATGACCTGA 300 consensus_426#1 CTGCTCCTCCCTCCGCGAGGACATCTTCATGCCCGGCATGTTCGTCGCGACATGACCTGA 217 ************** **************** **************************** consensus_426#0 CCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCGCCTCCGCAAGTTGTCCAAA 360 consensus_426#1 CCCTTCCCGTGGCCTGGACCGACCGATTGAACCTGTCCTCCCCTCCGTAAGTTGTCCAAA 277 **************************************** ****** ************ consensus_426#0 TTTTTTTCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCAC 420 consensus_426#1 TTTTTTCCCCCCTGGTCTTCTACCAGGGGATAGATCAAGATGATCGAATCACCAGCTCAC 337 ****** ***************************************************** consensus_426#0 ATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGC 480 consensus_426#1 ATTGCTATCTATCATCAGTCTGTTGTTTTTGATTCAGCAAACTGAAGAAGAAGAAGAAGC 397 ************************************************************ consensus_426#0 CAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCT 540 consensus_426#1 CAATGTTCTTGGTGGGTCATTATCACTGGAGACGATGAGCTTTTTTCTTTTACTGGACCT 457 ************************************************************ consensus_426#0 GGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGT 600 consensus_426#1 GGAAACTTGCAGAGATCTGGGCTTTTTAGAGAAAAGAGAGGTCGCCTGCCTGCCTTTAGT 517 ************************************************************ consensus_426#0 GATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTT 660 consensus_426#1 GATTTTAGTCGTGTAGTTTTGATCCTAAGGCTGCTGGCCAGTGCCCACATCCATTTTTTT 577 ************************************************************ consensus_426#0 TCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATA 720 consensus_426#1 TCTTCCTTTTCTTTCTTCTTCATTTCTTGCTCTTTGGCAGCAGTGACAATGTCTGCAATA 637 ************************************************************ consensus_426#0 TTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCT-------------------- 760 consensus_426#1 TTGCTACACTACTTCTGCTGTGAGATAATGACATTGAGCTGCTTTAGGTCAAAAAAAAAA 697 **************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||