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Oryza sativa
cluster # 4266 cluster # 4266       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4266#0 length = 1932 sequences # 3  

consensusID : consensus_4266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1932
fasta sequence
                              [ACGGGGCGTCCAAAATAGCAAGGGAAAAAAAAATTTCAGGCGAGTAGATTTGCATTCTTCTCCCCCACCTCGACGCCGGCGAGAGCCCCCCGGTCTCGCTTCCGCCGCCCGATCCGGCGCCGGGCCCGCCCGCCCGCCGCCGCGTGACAAGGGGAAGGCGAAGGGATGGAGTTCACGGAGGCGTACAAGCAGACGGGGCCGTGCTGCTTCTCCCCCGACGGCCGCTACCTCGCCGTCGCCGTCGACTACCGCCTCGTCGTCCGGGACGTCGTCTCCCTCAAGGTGGTGCAGTTGTTTTCATGTGTGGACAAGATAAGCTTTCTGGACTGGGCACCGGATTCAGAGTATATTCTATGTGGACTTTACAAGCGACCCATGGTGCAGGCTTGGTCACTGAGCCAGCCTGACTGGACCTGCAAGATTGATGAGGGCCCTGCTGGGATTGCATATGCTCGCTGGAGCCCTGACAGTCGTCATATACTAACAACATCAGAGTTTCAGCTCCGTCTGACTGTTTGGTCTCTTGTAAATACAGCATGCATACATGTACAGTGGCCAAAGCATGCCTCCAGAGGTGTTTCTTTTACTAAAGACGGGAAGTTCGCTGCAATCTGTACTAGGCGTGACTGCAAGGATTATGTAAATTTGCTGTCATGCCATTCCTGGGAGATAATGAGTGTCTTTGCTGTTGACACGGTAGACTTGGCAGGTGTTGAGTGGTCACCAGATGATAGTGCTATTGTGGTCTGGGATTCACTTCTGGAATACAAGGTTCTGATATATTCACCGGATGGGAGGTGCCTGTTCAAGTACTTAGCATATGAAAGTGGATTAGGTGTGAAAACTGTTGCGTGGTCACCATGTGGACAGTTTTTAGCAGTTGGCAGCTATGATCAAGCAGTTCGGACTTTGAACCACCTGACATGGAAAAC-TTTTGCTGAGTTCTCACACGCAGCATCTATTCGAAATCCTACTAATGCTGCTATATTTAAGGAAGTGGATGATCCATGGCAGCTTGACATGTCAGAGTTATGCCTAAGTGAAGGATTCTCCCGTAACATGCAAGGCAATGGTGCTGAAAATGGGACAGAGGGAGGTTCTCGAGTTAAGTATGCTGTGATGGATGCTCCAATCACTTTGCCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGGATATGGGATATCTGCCGCCTTGATCTTGCTGCTGTTCTTGTTCAGAAAGATCCAATCCGTGCTGCCGCTTGGGACCCTAATTGCCCACGCCTTGTTTTCTGCACGGAGAGTACGCACCTGTACATGTGGACACCATCTGGTGCATGCTGCGTCAACGTTCCGTTGCCAAACTTTCGGGTTGTGGACTTGAAATGGAACTCAGATGGAACTTGCCTCCTCCTGAAGGACCGTGATTCTTTCTGCTGTGCCGCAATTGTCTCTCCTTTGCCAGAGGAAGAAGAGGCTGATCAATCTGATGTTACCTCAGAAGATGAATGAACTTGCAGGCCTTGCTCTAACAATGGGATGTGCAGCTTTTAATCAGTGGATCTACATTTGTATCATATCGATAGATGTACCTGGGTAACAGCTTGTTCTGAAGTTGCTGATCGATCTGATGATAGCTCAGAAGATGAATGTGAGCTTTGTATGCCTTGCTCTAACAATGGGAGGGAAGACACATGTTTCTTTCCGCTTTAAAACACATAGAGACGCTGTCGTTGTAGGCTGCATCTGATATTCTTAAACCATCTTTGCTACACACCCTACGCTCCTTGAAACTGGCTAGATTGTTTTTTTGTAGATGTCAGTAAACGTGGAATCTTTACTCCATTTAACGTGTAATATCCGTTT]

[+] EMBL AK122086             [ACGGGGCGTCCAAAATAGCAAGGGAAAAAAAAATTTCAGGCGAGTAGATTTGCATTCTTCTCCCCCACCTCGACGCCGGCGAGAGCCCCCCGGTCTCGCTTCCGCCGCCCGATCCGGCGCCGGGCCCGCCCGCCCGCCGCCGCGTGACAAGGGGAAGGCGAAGGGATGGAGTTCACGGAGGCGTACAAGCAGACGGGGCCGTGCTGCTTCTCCCCCGACGGCCGCTACCTCGCCGTCGCCGTCGACTACCGCCTCGTCGTCCGGGACGTCGTCTCCCTCAAGGTGGTGCAGTTGTTTTCATGTGTGGACAAGATAAGCTTTCTGGACTGGGCACCGGATTCAGAGTATATTCTATGTGGACTTTACAAGCGACCCATGGTGCAGGCTTGGTCACTGAGCCAGCCTGACTGGACCTGTAAGATTGATGAGGGCCCTGCTGGGATTGCATATGCTCGCTGGAGCCCTGACAGTCGTCATATACTAACAACATCAGAGTTTCAGCTCCGTCTGACTGTTTGGTCTCTTGTAAATACAGCATGCATACATGTACAGTGGCCAAAGCATGCCTCCAGAGGTGTTTCTTTTACTAAAGACGGGAAGTTCGCTGCAATCTGTACTAGGCGTGACTGCAAGGATTATGTAAATTTGCTGTCATGCCATTCCTGGGAGATAATGAGTGTCTTTGCTGTTGACACGGTAGACTTGGCAGGTGTTGAGTGGTCACCAGATGATAGTGCTATTGTGGTCTGGGATTCACTTCTGGAATACAAGGTTCTGATATATTCACCGGATGGGAGGTGCCTGTTCAAGTACTTAGCATATGAAAGTGGATTAGGTGTGAAAACTGTTGCGTGGTCACCATGTGGACAGTTTTTAGCAGTTGGCAGCTATGATCAAGCAGTTCGGACTTTGAACCACCTGACATGGAAAAC TTTTGCTGAGTTCTCACACGCAGCATCTATTCGAAATCCTACTAATGCTGCTATATTTAAGGAAGTGGATGATCCATGGCAGCTTGACATGTCAGAGTTATGCCTAAGTGAAGGATTCTCCCGTAACATGCAAGGCAATGGTGCTGAAAATGGGACAGAGGGAGGTTCTCGAGTTAAGTATGCTGTGATGGATGCTCCAATCACTTTGCCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGGTATGCTGTCATGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGGATATGGGATATCTGCCGCCTTGATCTTGCTGCTGTTCTTGTTCAGAAAGATCCAATCCGTGCTGCCGCTTGGGACCCTAATTGCCCACGCCTTGTTTTCTGCACGGAGAGTACGCACCTGTACATGTGGACACCATCTGGTGCATGCTGCGTCAACGTTCCGTTGCCAAACTTTCGGGTTGTGGACTTGAAATGGAACTCAGATGGAACTTGCCTCCTCCTGAAGGACCGTGATTCTTTCTGCTGTGCCGCAATTGTCTCTCCTTTGCCAGAGGAAGAAGAGGCTGATCAATCTGATGTTACCTCAGAAGATGAATGAACTTGCAGGCCTTGCTCTAACAATGGGATGTGCAGCTTTTAATCAGTGGATCTACATTTGTATCATATCGATAGATGTACCTGGGTAACAGCTTGTTCTGAAGTTGCTGATCGATCTGATGATAGCTCAGAAGATGAATGTGAGCTTTGTATGCCTTGCTCTAACAATGGGAGGGAAGACACATGTTTCTTTCCGCTTTAAAACACATAGAGACGCTGTCGTTGTAGGCTGCATCTGATATTCTTAAACCATCTTTGCTACACACCCTACGCTCCTTGAAACTGGCTAGATTGTTTTTTTGTAGATGTCAGTAAACGTGGAATCTTTACTCCATTTAACGTGTAATATCCGTTT]
[+] EMBL CF304151             [           AAAATAGCAAGGGAAAAAAAAATTTCAGGCGAGTAGATTTGCATTCTTCTCCCCCACCTCGACGCCGGCGAGAGCCCCCCCGTCTCGCTTCCGCCGCCCGATCCGGCGCCGGGCCCGCCCGCCCGCCGCCGCGTGACAAGGGGAAGGCGAAGGGATGGAGTTCACGGAGGCGTACAAGCAGACGGGGCCGTGCTGCTTCTCCCCCGACGGCCGCTACCTCGCCGTCGCCGTCGACTACCGCCTCGTCGTCCGGGACGTCGTCTCCCTCAAGGTGGTGCAGTTGTTTTCATGTGTGGACAAGATAAGCTTTCTGGACTGGGCACCGGATTCAGAGTATATTCTATGTGGACTTTACAAGCGACCCATGGCGCAGGCTTGGTCACTGAGCCAGGCTGACTGGACCTGCAAGATTGATGAGGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA766110             [                                                                                                                                                                                                         TGCTGCCTCTCCCCCGACGGCCGCTACCTCGCCGTCGCCGTCGACTACCGCCTCGTCGTCCGGGACGTCGTCTCCCTCAAGGTGGTGCAGTTGTTTTCATGTGTGGACAAGATAAGCTTTCTGGACTGGGCACCGGATTCAGAGTATATTCTATGTGGACTTTACAAGCGACCCATGGTGCAGGCTTGGTCACTGAGCCAGCCTGACTGGACCTGCAAGATTGATGAGGGCCCTGCTGGGATTGCATATGCTCGCTGGAGCCCTGACAGTCGTCATATACTAACAACATCAGAGTTTCAGCTCCGTCTGACTGTTTGGTCTCTTGTAAATACAGCATGCATACATGTACAGTGGCCAAAGCGTGCCTCCAGAGGTGTTTCTTTTACTAAAGACGGGAAGTTCGCTGCAATCTGTACTAGGCGTGACTGCAAGGATTATGTAAATTTGCTGTCATGCCATTCCTGGGAGATAATGAGTGTCTTTGCTGTTGACACGGTAGACTTGGCAGGTGTTGAGTGGTCACCAGATGATAGTGCTATTGTGGTCTGGGATTCACTTCTGGAATACAAGGTTCTGATATATTCACCGGATGGGAGGTGCCTGTTCAAGTAC TAGCATATGAAAGTGGATTANGTGTGAAAACTGTTGCGTGGTCACCATGTGGACAGGTTTTAGCAGTTGGCAGCTATGATCAAGCAGTTCGGACTTTGAACCACCTGACATGGAAAACTTTTTGCTGAGTTCTCACACGCAGCATCTATTCGAAATCCTACTAATGCTGCTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_4266#0 ACGGGGCGTCCAAAATAGCAAGGGAAAAAAAAATTTCAGGCGAGTAGATTTGCATTCTTC TCCCCCACCTCGACGCCGGCGAGAGCCCCCCGGTCTCGCTTCCGCCGCCCGATCCGGCGC CGGGCCCGCCCGCCCGCCGCCGCGTGACAAGGGGAAGGCGAAGGGATGGAGTTCACGGAG GCGTACAAGCAGACGGGGCCGTGCTGCTTCTCCCCCGACGGCCGCTACCTCGCCGTCGCC GTCGACTACCGCCTCGTCGTCCGGGACGTCGTCTCCCTCAAGGTGGTGCAGTTGTTTTCA TGTGTGGACAAGATAAGCTTTCTGGACTGGGCACCGGATTCAGAGTATATTCTATGTGGA CTTTACAAGCGACCCATGGTGCAGGCTTGGTCACTGAGCCAGCCTGACTGGACCTGCAAG ATTGATGAGGGCCCTGCTGGGATTGCATATGCTCGCTGGAGCCCTGACAGTCGTCATATA CTAACAACATCAGAGTTTCAGCTCCGTCTGACTGTTTGGTCTCTTGTAAATACAGCATGC ATACATGTACAGTGGCCAAAGCATGCCTCCAGAGGTGTTTCTTTTACTAAAGACGGGAAG TTCGCTGCAATCTGTACTAGGCGTGACTGCAAGGATTATGTAAATTTGCTGTCATGCCAT TCCTGGGAGATAATGAGTGTCTTTGCTGTTGACACGGTAGACTTGGCAGGTGTTGAGTGG TCACCAGATGATAGTGCTATTGTGGTCTGGGATTCACTTCTGGAATACAAGGTTCTGATA TATTCACCGGATGGGAGGTGCCTGTTCAAGTACTTAGCATATGAAAGTGGATTAGGTGTG AAAACTGTTGCGTGGTCACCATGTGGACAGTTTTTAGCAGTTGGCAGCTATGATCAAGCA GTTCGGACTTTGAACCACCTGACATGGAAAACTTTTGCTGAGTTCTCACACGCAGCATCT ATTCGAAATCCTACTAATGCTGCTATATTTAAGGAAGTGGATGATCCATGGCAGCTTGAC ATGTCAGAGTTATGCCTAAGTGAAGGATTCTCCCGTAACATGCAAGGCAATGGTGCTGAA AATGGGACAGAGGGAGGTTCTCGAGTTAAGTATGCTGTGATGGATGCTCCAATCACTTTG CCTTCACAGAAACCCGTTACAGACAAGCCCAACCCCAAGCAGGGAATTGGTATGCTGTCA TGGAGCAGCGACAGTCACTATTTCTTCACTCGGAATGACAATATGCCAACTGCTCTTTGG ATATGGGATATCTGCCGCCTTGATCTTGCTGCTGTTCTTGTTCAGAAAGATCCAATCCGT GCTGCCGCTTGGGACCCTAATTGCCCACGCCTTGTTTTCTGCACGGAGAGTACGCACCTG TACATGTGGACACCATCTGGTGCATGCTGCGTCAACGTTCCGTTGCCAAACTTTCGGGTT GTGGACTTGAAATGGAACTCAGATGGAACTTGCCTCCTCCTGAAGGACCGTGATTCTTTC TGCTGTGCCGCAATTGTCTCTCCTTTGCCAGAGGAAGAAGAGGCTGATCAATCTGATGTT ACCTCAGAAGATGAATGAACTTGCAGGCCTTGCTCTAACAATGGGATGTGCAGCTTTTAA TCAGTGGATCTACATTTGTATCATATCGATAGATGTACCTGGGTAACAGCTTGTTCTGAA GTTGCTGATCGATCTGATGATAGCTCAGAAGATGAATGTGAGCTTTGTATGCCTTGCTCT AACAATGGGAGGGAAGACACATGTTTCTTTCCGCTTTAAAACACATAGAGACGCTGTCGT TGTAGGCTGCATCTGATATTCTTAAACCATCTTTGCTACACACCCTACGCTCCTTGAAAC TGGCTAGATTGTTTTTTTGTAGATGTCAGTAAACGTGGAATCTTTACTCCATTTAACGTG TAATATCCGTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)