These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1118 fasta sequence [TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGATTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATTTTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCATATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGTTCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACTGCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAAATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGCTCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACTAACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAGTGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCGGACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGTATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATTTTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTCAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGCAAGCGCGCCCCTCG] [+] EMBL AK105573 [TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGATTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATTTTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCATATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGTTCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACTGCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAAATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGCTCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACTAACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAGTGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCGGACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGTATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATTTTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTCAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGCAAGCGCGCCCCTCG] consensusID : consensus_427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGACGATTGGTTTTCAACATGCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCCTACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTGTTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAAGAATCACATGATATAGCT] [+] EMBL AK111331 [GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGACGATTGGTTTTCAACATGCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCCTACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTGTTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAAGAATCACATGATATAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_427#0 TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGA 60 consensus_427#1 ------------------------------------------------------------ consensus_427#0 TTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATT 120 consensus_427#1 ------------------------------------------------------------ consensus_427#0 TTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCAT 180 consensus_427#1 ------------------------------------------------------------ consensus_427#0 ATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGT 240 consensus_427#1 ------------------------------------------------------------ consensus_427#0 TCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACT 300 consensus_427#1 ------------------------------------------------------------ consensus_427#0 GCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAA 360 consensus_427#1 ------------------------------------------------------------ consensus_427#0 ATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGC 420 consensus_427#1 ------------------------------------------------------------ consensus_427#0 TCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACT 480 consensus_427#1 ------------------------------------------------------------ consensus_427#0 AACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAG 540 consensus_427#1 ------------------------------------------------------------ consensus_427#0 TGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCG 600 consensus_427#1 ------------------------------------------------------------ consensus_427#0 GACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGG 660 consensus_427#1 ---------------GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGG 45 ********************************************* consensus_427#0 CTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTT 720 consensus_427#1 CTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTT 105 ************************************************************ consensus_427#0 CGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCA 780 consensus_427#1 CGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCA 165 ************************************************************ consensus_427#0 GATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGC 840 consensus_427#1 GATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGC 225 ************************************************************ consensus_427#0 TCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTG 900 consensus_427#1 TCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTG 285 ************************************************************ consensus_427#0 GGAGCTCGACACTTGGGGT--ATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATT 958 consensus_427#1 GGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTC 345 ****************** **** ** ** * ** * * * * * * * * consensus_427#0 -------TTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACT-TTCATTTCCAATAT 1010 consensus_427#1 AAAACCATTCCGTCCCTCAACTGTAG-AACTGTTTGA--TTGACGATTGGTTTTCAACAT 402 ** ** * * ** ** * ***** ** **** ** *** *** ** consensus_427#0 GCCATTTT-CAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAAC 1069 consensus_427#1 GCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCC 462 ***** * ** *** ***** * * ** * * * * consensus_427#0 CATTCCGTCCCTCAACTGTAGAACTGTTTG-ATTGCAAGCGCGCCCCTCG---------- 1118 consensus_427#1 TACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTG 522 * * * * * * **** ******* * * * * consensus_427#0 ------------------------------------------------------------ consensus_427#1 TTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAA 582 consensus_427#0 ------------------ consensus_427#1 GAATCACATGATATAGCT 600 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||