cluster # 427

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Oryza sativa
cluster # 427 cluster # 427 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_427#0 length = 1118 sequences # 1

consensus_427#1 length = 600 sequences # 1

consensusID : consensus_427#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1118
fasta sequence

                              [TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGATTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATTTTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCATATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGTTCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACTGCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAAATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGCTCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACTAACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAGTGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCGGACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGTATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATTTTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTCAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGCAAGCGCGCCCCTCG]

[+] EMBL AK105573             [TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGATTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATTTTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCATATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGTTCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACTGCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAAATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGCTCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACTAACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAGTGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCGGACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGTATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATTTTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTCAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGCAAGCGCGCCCCTCG]




>consensus_427#0
TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGA
TTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATT
TTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCAT
ATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGT
TCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACT
GCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAA
ATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGC
TCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACT
AACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAG
TGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCG
GACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGG
CTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTT
CGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCA
GATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGC
TCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTG
GGAGCTCGACACTTGGGGTATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATTTT
TGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACTTTCATTTCCAATATGCCATTTTCA
GGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCC
TCAACTGTAGAACTGTTTGATTGCAAGCGCGCCCCTCG

consensusID : consensus_427#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGACGATTGGTTTTCAACATGCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCCTACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTGTTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAAGAATCACATGATATAGCT]

[+] EMBL AK111331             [GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCCCTCAACTGTAGAACTGTTTGATTGACGATTGGTTTTCAACATGCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCCTACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTGTTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAAGAATCACATGATATAGCT]




>consensus_427#1
GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGGCTGGGATGGCGATGC
GAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTTCGGATAGCGCAGGCA
GTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCAGATCCAGCGCTTCTC
TGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGCTCCTCTCTACTGTTA
CTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTGGGAGCTCGACACTTG
GGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAACCATTCCGTCC
CTCAACTGTAGAACTGTTTGATTGACGATTGGTTTTCAACATGCCATGCAACTATATTTT
GGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCCTACTGAAAATCAAATAGG
AGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTGTTAAGACTCAAAATTCAA
AATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAAGAATCACATGATATAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_427#0      TCCAGCAGCTCATCCAAATTTAAATCTTCATATCCCTATATGGATTATTATAGAAAACGA 60
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      TTCTCTCTGCATATTCCTCTTCACTCCAACAGATCATCCATATACCTTCATATCACAATT 120
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      TTCTATATGTTGTTAATATCTTCTGACCATCCATATATTTGTATTATTTTTTATAACCAT 180
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      ATTTGTAAACCTAGCTGAAAAATCCAAATTTATTGTATTCTAAGACAACTAAGGGTGTGT 240
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      TCGGATATCCCTTTTCCCAACTCCTCTCCTCTCGTTTTCCGCTCACACTCTTTTCGAACT 300
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      GCTAAACGGTGTGTTTTTTTGTAAAAAGTTTCTATACGAAAGTTGCTTGAAAAAAATCAA 360
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      ATTAATCCATTTTAAAAAAAATCTAGCTAATACTTGATTAATCATGCACTAATGGATCGC 420
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      TCCGTTTTCCGTGCTTACTGTGCTGATGGGAACCAGAACCAGCGAACTCACCCTAATACT 480
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      AACTCTATCCAAGCATATTTCTCTCCCTCTCTCCTCTGTACCTGCCAATAGCCAGGAGAG 540
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      TGACAGAAGAGGGGAAGGATGAGTGGAAGGACGAAGGAGGAGGGCTAATGGCAGACAGCG 600
consensus_427#1      ------------------------------------------------------------
                                                                                 

consensus_427#0      GACAACACGGCCAAAGGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGG 660
consensus_427#1      ---------------GGTGCAAGTGGATGATGGGTGGCACAAGCGGAGAGATGCGAGCGG 45
                                    *********************************************

consensus_427#0      CTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTT 720
consensus_427#1      CTGGGATGGCGATGCGAGTGTGGGTAGCGGGGACGACAGGAGTTGTGGGCAGAGAAGCTT 105
                     ************************************************************

consensus_427#0      CGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCA 780
consensus_427#1      CGGATAGCGCAGGCAGTGGCATGGCACGAGCGGCGGGGTGCTCCAGCGATCTCTCTACCA 165
                     ************************************************************

consensus_427#0      GATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGC 840
consensus_427#1      GATCCAGCGCTTCTCTGTCTTCACTCTGGCAAATTTCCACCACCAAATCCGGTATGCAGC 225
                     ************************************************************

consensus_427#0      TCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTG 900
consensus_427#1      TCCTCTCTACTGTTACTCCCCTCATGGTATGCAGTCCGGATGGTGGCGTGAGTTTGATTG 285
                     ************************************************************

consensus_427#0      GGAGCTCGACACTTGGGGT--ATGGCGTGAGGTTTCTGCTCGGATAACACCCAAGCTATT 958
consensus_427#1      GGAGCTCGACACTTGGGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTC 345
                     ******************   ****  **  ** * ** *  *    * *  * * * * 

consensus_427#0      -------TTTGGTTGCCCGGATGGAGTATCTGTTGGAGACTGACT-TTCATTTCCAATAT 1010
consensus_427#1      AAAACCATTCCGTCCCTCAACTGTAG-AACTGTTTGA--TTGACGATTGGTTTTCAACAT 402
                            **  **  * *   ** ** * ***** **   ****  **  *** *** **

consensus_427#0      GCCATTTT-CAGGATGATGGGATGGAGTATTTGGTGAGGATGCTCTTATGGTCTCAAAAC 1069
consensus_427#1      GCCATGCAACTATATTTTGGAATGGATCTAGTAGAGAATTGACGGGGCCCACTTTCATCC 462
                     *****    *   **  *** *****     * * **     *          *  *  *

consensus_427#0      CATTCCGTCCCTCAACTGTAGAACTGTTTG-ATTGCAAGCGCGCCCCTCG---------- 1118
consensus_427#1      TACTGAAAATCAAATAGGAGTAGTCATTTGCATTGCAAATGGGATCGCTGTTATAGACTG 522
                      * *      *  *   *   *    **** *******  * *  *   *          

consensus_427#0      ------------------------------------------------------------
consensus_427#1      TTAAGACTCAAAATTCAAAATGCTGCCATGAAAATTGATATTGGCTTCTTTCGAATGCAA 582
                                                                                 

consensus_427#0      ------------------
consensus_427#1      GAATCACATGATATAGCT 600