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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4272#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2445 fasta sequence
[TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACTGATCCGATGGCCGGTCGCCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCTCCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGAAAACCGAGGCATCCTAGCGCTCCTCTCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCTAATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGTATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAATTATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAGGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAGTACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATTCAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACCTCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATGATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTTTTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCAGTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCAAATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCTAATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATCAAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCATTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTTAGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCAGTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAGTTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTTGCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTATTTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAGTGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTATTGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTTTTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC]
[+] EMBL CB683877 [TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACT ]
[+] EMBL AK099935 [ TCTTGCCCTCCTCCAGCCATTGTCGTCATGTCGCTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTCATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAGATTTGCCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGACAGCGGTGGAGGTGGTGGGCATAGGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGGATGGAGGCACGGGATCCGGCGGGCGACGGCCAACCCCCGCACGGATCCGATGGCCGGTCGCCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCTCCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGAAAACCGAGGCATCCTAGCGCTCCTCTCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCTAATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGTATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAATTATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAGGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAGTACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATTCAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACCTCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATGATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTTTTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCAGTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCAAATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCTAATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATCAAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCATTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTTAGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCAGTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAGTTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTTGCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTATTTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAGTGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTATTGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTTTTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC]
consensusID : consensus_4272#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence
[TCCTCCCCGGGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAGTACATTTGCTT]
[-] EMBL CB683433 [TCCTCCCCGGGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCACCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAATCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGGCGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACAAGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTTCTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCACTGCTTGCGATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTCGACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATGCTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGTCAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAGTACATTTGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4272#0 TCGCCCTCGCCGACGCCGCAGCCGCAGTCTTGCCCTCCTCCAGCCATTGTCGTCATGTCG 60
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 CTGCTGTTGCTCCCTCTTGGTTTCCTCCTCCTTTCACGCGTGCCACCGCCCCACACCTTC 120
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 ATCCGTCCATCATCTCTGCGCCGCCGCCACCGCTCTGTGCAAGCGAGGCCATCAAATTTG 180
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 CCAGCGACGAGCCCAGGCTACCGGATCCGGTGACCCCGACCGCACTGCGGCGCACGGCGA 240
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 CAGCGGTGGAGGTGGTGGGCATAAGCGACGGCGCGTGGCGGCCTCCTCCACACGGTGGGG 300
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 ATGGAGGCACGGGATCCGGCGGGAGACGGCCAACACCGGCACTGATCCGATGGCCGGTCG 360
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 CCCTGCCCCCGCCCCACGGCCGCATCGCCTCCCCCTAGCCCTGGCGCTGCAGTCGCCCCT 420
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 CCCCCTCCTCCCCGCGACATCGCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCC 480
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 GCCTCCTCGGCGTGTATGGAGAAACGGAACCGTCGGTGGGCGCACACAGCAAGAAACGGA 540
consensus_4272#1 --------------------------------------------TCCTCCCCGGGACATC 16
* * * **
consensus_4272#0 AAACCGAGGCATCCTAG-CGCTCCTC--TCCCGTCCCCTTCCTCCTCCTCCGGCCCTCCA 597
consensus_4272#1 GCACCCTAGCGCCACAGGTGCTTCACGCTCCCAGCAGCCGCCTCCTCCTCCGGCCCTCCA 76
*** ** * ** *** * * **** * * ********************
consensus_4272#0 CCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAA 657
consensus_4272#1 CCGAAGCGCCCCAAGGCGGAGGCAGCGCCCACGTTGCCGACACGTCGGTGCCTGGGAGAA 136
************************************************************
consensus_4272#0 TCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGG 717
consensus_4272#1 TCAAGGAGGATTCGGCAGCGACCGCGTCCGCCAAGAGCGCCAGCTCGGGCGAGGATGTGG 196
************************************************************
consensus_4272#0 CGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACA 777
consensus_4272#1 CGGCCAAGAGAGTTGAAGAAAAGTGGTACACAACAGCTGGATCGATCTGCTCGGCCAACA 256
************************************************************
consensus_4272#0 AGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTT 837
consensus_4272#1 AGCAGCCTCTCCATACAAGAACAGTCGTCCCTGGATCTCTGCTCCGCCAGCAAGTAGCTT 316
************************************************************
consensus_4272#0 CTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCAC 897
consensus_4272#1 CTCCTCCATATAACCACATCTGTAGATTGATCGGCTCTTCCAACAAAGGGGTTGTTCCAC 376
************************************************************
consensus_4272#0 TGCTTGCGTAGGTTCTTTTCCCATTCAGCTAAAACTTTTTATAATACATTGATTGATGCT 957
consensus_4272#1 TGCTTGCG---------------------------------------------------- 384
********
consensus_4272#0 AATTGAGTAATCACACTAATTTCTTCGTGATTCAATTATGAATTTCCAACCGATTTCAGT 1017
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 ATCCCAAATTGATCCCTTCTTTTTTTCCCTGTATAACAGTATTTGCACTAACAGTTTAAT 1077
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TATTCCCTTCAATTTCTTCATAGGATTAACTACTTTGATTTCGTCTTGGGTTTATTACAG 1137
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 GATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTC 1197
consensus_4272#1 -ATTAAATAATCCACAACCATTTTATCGATGTTGTTGGACTATTGTGGGGAAATTTCTTC 443
***********************************************************
consensus_4272#0 GACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATG 1257
consensus_4272#1 GACAGTAATACGTAACAATTTAATCATTTTTCCCCTAACTATACAATTTCTATTATTATG 503
************************************************************
consensus_4272#0 CTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGT 1317
consensus_4272#1 CTCCTTTGTTTTCCATTTTTATTTTTTATTTTGTGATTATTCAGGTTACCTTGCATCTGT 563
************************************************************
consensus_4272#0 CAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATGGAAAGTTTAGTAG 1377
consensus_4272#1 CAAGCACCTTTGTATTTTAAGGTTTTAGTATTCTATAATGTAACATAGGAAGTTTAGTAG 623
********************************************** * ***********
consensus_4272#0 TACATTTGCTTCACTGAATCACTACAGATAATTCCTATCACTGAATGCTATTTAGTGATT 1437
consensus_4272#1 TACATTTGCTT------------------------------------------------- 634
***********
consensus_4272#0 CAATGATTATATATATATTTTGCGTACTTGGGGTACTAGATGATAAGATGAAATATAACC 1497
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TCAGATAATTCCCAATTTATCAAAAGTTTGGTGATCCCTTTAGTCAGCCTTGTGAGCATG 1557
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 ATTCAGTGAAGCAATGGCTCATATGGAGATTTTTTTTTTTATCATATGCAACACGGTGTT 1617
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TTCATATAGATTCTTTTTGTGTGATTCTTGAGGCTTTGGCAATTCTTTCTGTAACCATCA 1677
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 GTGATGTAAGTGCCAGCTACAGTTTGTACAGGTCCCAGTCTTCTTTGATTTTGTTTACCA 1737
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 AATATTACCTGACCTGAGTTCACAATTTTAAGTCATAATAGTATGATCTCAAAATTCTCT 1797
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 AATTAACTTAAAAATAAGTTACTGTCTATTTTATCTCAAACTTACATTGATTCATATATC 1857
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 AAGTTTATCTTCCTCATGTACTGAGAAACTGCATAATTTATCAACTTTTCATGAATCCCA 1917
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TTTCCTCATATGAGGTACCATCATGTCTTTGTATCTTAGGTGAATCCTGTTTGTTTTTTT 1977
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 AGATATGATTATCATCTTCAAACTTCCATCTGTACTACATATATATATCGAGTATTTTCA 2037
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 GTATTGTTCTTCTTGCCCCCATAGGTTTGGAAGCTAGCGTTTGATAAATAATAAACTGAG 2097
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TTCGGGAATAGCTAGCCTACAGCAGATGAGAAAAAAAACATATACAACCATTCAGCTCTT 2157
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 GCCACTGACTTTACCATTAACCTTATCCTATTGGTTCATCGTAAATAAATATACTCCTAT 2217
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TTTCTGTCAGGTACTATCGTGCTGTTTTACATGAGGTCTCAACTCTCAATGCACTGAAAG 2277
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TGAAGCATTGTGCAAAAAGTTGCCCCACTATCATCCAGAATTTCAGACCGCAGTTTGTAT 2337
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TGCGGCAATTTCCCTTCTTTACATACTATTGTTTTTATCTCACAAAGTGTACCTAGATTT 2397
consensus_4272#1 ------------------------------------------------------------
consensus_4272#0 TTAAATTCTATTTCAATACAAATATCCCGCAGCAACGCGCGGGGTATC 2445
consensus_4272#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||