These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1432 fasta sequence [AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT] [+] EMBL AK059248 [AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAA ] [+] EMBL AB088487 [ CAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT] consensusID : consensus_4273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA] [-] EMBL CA759049 [ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4273#0 AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATC 60 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAA 120 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGC 180 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGA 240 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 TCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCT 300 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAA 360 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGAT 420 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 TAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCC 480 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 AAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGA 540 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCG 600 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCAT 660 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGAC 720 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGA 780 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 GTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAG 840 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCC 900 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 AAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGG 960 consensus_4273#1 ------------------------------------------------------------ consensus_4273#0 CGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCT 1020 consensus_4273#1 ----------------------ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCT 38 ** ** * *************************** consensus_4273#0 TGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 1080 consensus_4273#1 TGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 98 *********** ************************************************ consensus_4273#0 GAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCT 1140 consensus_4273#1 GAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCT 158 ********* ************** **** ****************************** consensus_4273#0 TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 1200 consensus_4273#1 TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 218 ************************************************************ consensus_4273#0 GTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 1260 consensus_4273#1 GTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 278 ***************** ****************************************** consensus_4273#0 CGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 1320 consensus_4273#1 CGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 338 ************** ******************************************** consensus_4273#0 ATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 1380 consensus_4273#1 ATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 398 ************************* ********************************** consensus_4273#0 GTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT-------- 1432 consensus_4273#1 GTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATA 458 ******************** **************************** ** consensus_4273#0 -------------------------------------- consensus_4273#1 GCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA 496 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||