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Oryza sativa
cluster # 4273 cluster # 4273       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4273#0 length = 1432 sequences # 2  
consensus_4273#1 length = 496 sequences # 1  

consensusID : consensus_4273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1432
fasta sequence
                              [AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT]

[+] EMBL AK059248             [AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATCCAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAAGAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGCGATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGATCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCTGCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAACGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGATTAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCCAAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGAGTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCGCGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCATCATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGACCGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGAGTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAGCTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCCAAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGGCGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAA      ]
[+] EMBL AB088487             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT]


>consensus_4273#0 AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATC CAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAA GAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGC GATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGA TCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCT GCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAA CGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGAT TAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCC AAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGA GTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCG CGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCAT CATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGAC CGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGA GTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAG CTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCC AAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGG CGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCT TGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA GAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCT TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT GTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA CGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC ATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTT GTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT



consensusID : consensus_4273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence
                              [ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA]

[-] EMBL CA759049             [ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA]


>consensus_4273#1 ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCTTGAGATTGACGGCTTTGCACGC TCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGAGAAGTCCATAGCTTATGAGTTT CTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCTTCGGTTAATGTTTACTAAAAAG AAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATTGTCACGCAGTAGATGATTCCGA TGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCACGGTGCATCTCATGGGTTCATC AGCATTTGTTATGTTGTGTATCGATGTTGCATACTTACATCTGTGAGTCGAAATTTCCCC CATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTTGTTGTCATCTACCCCAGTGGGT GATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATAGCAATCCCATGAAATTTATGTT TAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4273#0      AGGCTCCTAAAATTTGTCATCCACATACAAATTTCACAGAGAAAAAACCATGATGTCATC 60
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CAATTCCCTCTTCCAGCGTCTGGCAAAATGGTGCCCGTGGTTACTGAGAGATGAGCCGAA 120
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GAAGCCTGTCAAGGTTCTTGTCACCGGCGCCGCAGGGCAAATAGGGTATGCCATTGTCGC 180
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GATGATCGCGAGGGGCCTCATGCTAGGAGCCGACCAGCCGGTGGTGCTCCACCTGCTGGA 240
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      TCTGCCGGTCGCGGCCAATGCTCTGAACGGCGTCAGGATGGAACTGATCGACGCTGCGCT 300
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GCCGCTGCTCAGAGGAGTGGTGGCGACGAGTGACGAGGCTGAGGCGTTCAAGGGCGTCAA 360
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CGTCGCCATCGTCATCGGTGGATGGCCGAGGAGAGACGGGATGGAGAGGAAAGATTTGAT 420
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      TAGCAAGAACGTGACAATCTACAAATCCCAGGCCTCTGCGCTCCATCAGCACGCCGCCCC 480
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      AAACTGCAAGGTCTTGGTCGTGGTCAATCCCGCGAACACCAACGCGCTCGTCCTGAAGGA 540
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GTTCGCCCCGGCAATCCCGGCCAAGAACATCACCTGCCTCACCAGGCTCGACCACAACCG 600
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CGCCCTCGGCCAGGTCGCCGAGAAGCTGAACGTGCACGTCGGCGACGTCAAGAACGCCAT 660
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CATATGGGGCAACCACTCCTCCACGCAGTTCCCCGACGCCAGCCACGCCACCGTCTCGAC 720
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CGACCGCGGCGAGAGGCCCGTCAGGGAGCTCATCGCCGACGAGATATGGCTGAGGGAGGA 780
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      GTTCGTCACCGACGTGCAGCAGCGAGGCGCGGCGGTGATCAAGGCGCGGAAGCAGTCGAG 840
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CTCGCTGTCCGCCGCCAGCGCGGCATGCGACCACATGAGAGACTGGATCCTTGGAACCCC 900
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      AAAGGGTACGTGGGTGTCCATGGGCGTTTACTCTGACGGCAGCTATGGCGTCCCCGAGGG 960
consensus_4273#1      ------------------------------------------------------------
                                                                                  

consensus_4273#0      CGTCCTCTTCTCGTTTCCGGTGACCTGCGAGAAGGGGGAGTGGTCTGTCGTGCAGGGTCT 1020
consensus_4273#1      ----------------------ACGAGCCAAGGGGGGGAGTGGTCTGTCGTGCAGGGTCT 38
                                            **  ** *   ***************************

consensus_4273#0      TGAGATTGACGACTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 1080
consensus_4273#1      TGAGATTGACGGCTTTGCACGCTCCAAGATGGAAACCTCGGCGACCGAGCTCAAGGAAGA 98
                      *********** ************************************************

consensus_4273#0      GAAGTCCATTGCTTATGAGTTTCTCTGATCTGAACTGCAACCGAGGTCCGAAGCAGAGCT 1140
consensus_4273#1      GAAGTCCATAGCTTATGAGTTTCTTTGATTTGAACTGCAACCGAGGTCCGAAGCAGAGCT 158
                      ********* ************** **** ******************************

consensus_4273#0      TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 1200
consensus_4273#1      TCGGTTAATGTTTACTAAAAAGAAATCGTTGCAAGGGTTTCGTCAGTGATGTTTCTCATT 218
                      ************************************************************

consensus_4273#0      GTCACGCAGTAGATGATCCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 1260
consensus_4273#1      GTCACGCAGTAGATGATTCCGATGATCCATGGGTGGTGTTGTTAGCTGGTGATGCTATCA 278
                      ***************** ******************************************

consensus_4273#0      CGGTGCATCTCATGATTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 1320
consensus_4273#1      CGGTGCATCTCATGGGTTCATCAGCATTTGTTATGTTGTGTATCGATGTTGCATACTTAC 338
                      **************  ********************************************

consensus_4273#0      ATCTGTGAGTCGAAATTTCCCCCATCTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 1380
consensus_4273#1      ATCTGTGAGTCGAAATTTCCCCCATTTGTGTTGTATACCCAGCCAACAAGGAATGCACTT 398
                      ************************* **********************************

consensus_4273#0      GTTGTCATCTACCCCAGTGGCTGATATTTAAGAAAATAAAAATCAATTGACT-------- 1432
consensus_4273#1      GTTGTCATCTACCCCAGTGGGTGATATTTAAGAAAATAAAAATCAATTGGCTGGTGAATA 458
                      ******************** **************************** **        

consensus_4273#0      --------------------------------------
consensus_4273#1      GCAATCCCATGAAATTTATGTTTAAAAAAAAAAAAAAA 496
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)