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Oryza sativa
cluster # 4277 cluster # 4277       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4277#0 length = 796 sequences # 2  
consensus_4277#1 length = 584 sequences # 1  

consensusID : consensus_4277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 796
fasta sequence
                              [TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA]

[+] EMBL AK068653             [TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA]
[+] EMBL OSR25401A            [                                  GCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTNGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGC                                                                                                                                                                                                                                                                                                                                                                                                                               ]


>consensus_4277#0 TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCG ACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATC TAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGG GAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGC AACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGG AGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGT TCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACT ACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCG AGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCC GCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCA AGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCA CCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGT TCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCG ACATCTTCGCGCGCGA



consensusID : consensus_4277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence
                              [AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC]

[+] EMBL CA755107             [AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC]


>consensus_4277#1 AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTC CACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGC CGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGG GGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGC GGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTT CGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCG CTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGA CCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGG CGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCT CTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4277#0      TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCG 60
consensus_4277#1      --------------------------------AAGCCCAACCCCCGAAGCATCCAACGCG 28
                                                        ***       **   *   ** * **

consensus_4277#0      ACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATC 120
consensus_4277#1      A----GAGGCGGCGAGATGCTG-TCGTCTTCCACCTCCACCCACTGCCTCCACC---AGC 80
                      *    ***  *****  *  ** ** ** *** ***** **    ******      * *

consensus_4277#0      TAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCG-CCAACCTCCAGGTGCTCCGGCGCGTG 179
consensus_4277#1      CGCCGCCG--CCGCCGGCGAGCCACCAATTCCGGTCGGCCGCC--GCGTTCCGCCGCCCT 136
                         ****   ****** ***  * **  * ***  *  ** **  * * **** ***   

consensus_4277#0      GGAGTGGCGGCGGCTTCAATCCGGCTTCGTGC-CGCCCGCGCCACGGGAGGTGATGCACG 238
consensus_4277#1      CCGTCTCCGGCGGCGGCGCCCC---TCCGCGCGCGGCCGCAGCGCGGG-GGCGGCAC-CA 191
                             *******  *   **   * ** ** ** ****  * **** ** *   * * 

consensus_4277#0      GCAACCGTTCGACC-ATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACG 297
consensus_4277#1      CCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCC 251
                       ** ***  * * * * *   * *      * **  * *          ** ** *  * 

consensus_4277#0      AGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGC 357
consensus_4277#1      TGGAGGAGCGGCAGCGG------CTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCC 305
                       ****  ****  ****      ************ **** ***** ** ****  ** *

consensus_4277#0      AGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAG 417
consensus_4277#1      AGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCG 365
                      *******  ** * **  * * ********* *****  * ** ** ***** ***** *

consensus_4277#0      ACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCG 477
consensus_4277#1      ACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCT 425
                      ******** ** * ** **     ******** * ******   *** ******* *** 

consensus_4277#0      TCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCC 537
consensus_4277#1      GCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCC 485
                       ***************************** *********************** *****

consensus_4277#0      TCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCG 597
consensus_4277#1      TCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCG 545
                      **** *************************** ************ **************

consensus_4277#0      TCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCT 657
consensus_4277#1      TCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC--------------------- 584
                      **************  **************** ******                     

consensus_4277#0      GCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCG 717
consensus_4277#1      ------------------------------------------------------------
                                                                                  

consensus_4277#0      TGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCC 777
consensus_4277#1      ------------------------------------------------------------
                                                                                  

consensus_4277#0      TCGACATCTTCGCGCGCGA 796
consensus_4277#1      -------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)