These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4277#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence [TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA] [+] EMBL AK068653 [TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTGGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAGACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCGTCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCCTCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCGTCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCTGCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCGTGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCCTCGACATCTTCGCGCGCGA] [+] EMBL OSR25401A [ GCCGCGTTGGCGCGCCGCTCACCTCGACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATCTAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCGCCAACCTCCAGGTGCTCCGGCGCGTGGGAGTNGCGGCGGCTTCAATCCGGCTTCGTGCCGCCCGCGCCACGGGAGGTGATGCACGGCAACCGTTCGACCATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACGAGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGCAGTTCCTGACCAGGACGCTGGTGC ] consensusID : consensus_4277#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 584 fasta sequence [AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC] [+] EMBL CA755107 [AAGCCCAACCCCCGAAGCATCCAACGCGAGAGGCGGCGAGATGCTGTCGTCTTCCACCTCCACCCACTGCCTCCACCAGCCGCCGCCGCCGCCGGCGAGCCACCAATTCCGGTCGGCCGCCGCGTTCCGCCGCCCTCCGTCTCCGGCGGCGGCGCCCCTCCGCGCGCGGCCGCAGCGCGGGGGCGGCACCACCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCCTGGAGGAGCGGCAGCGGCTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCCAGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCGACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCTGCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCCTCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCGTCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4277#0 TCTCCCCATTTGTAGGCTGGCGGCGCGAGACACCGCCGCGTTGGCGCGCCGCTCACCTCG 60 consensus_4277#1 --------------------------------AAGCCCAACCCCCGAAGCATCCAACGCG 28 *** ** * ** * ** consensus_4277#0 ACGCCGAGATGGCGATGTCGTGCTCTTCCTCCTCCTCCTCCGTGCGCCTCCGATTGAATC 120 consensus_4277#1 A----GAGGCGGCGAGATGCTG-TCGTCTTCCACCTCCACCCACTGCCTCCACC---AGC 80 * *** ***** * ** ** ** *** ***** ** ****** * * consensus_4277#0 TAGCGCCCTCCCGCCGCCGAATCGCCGCTCCCG-CCAACCTCCAGGTGCTCCGGCGCGTG 179 consensus_4277#1 CGCCGCCG--CCGCCGGCGAGCCACCAATTCCGGTCGGCCGCC--GCGTTCCGCCGCCCT 136 **** ****** *** * ** * *** * ** ** * * **** *** consensus_4277#0 GGAGTGGCGGCGGCTTCAATCCGGCTTCGTGC-CGCCCGCGCCACGGGAGGTGATGCACG 238 consensus_4277#1 CCGTCTCCGGCGGCGGCGCCCC---TCCGCGCGCGGCCGCAGCGCGGG-GGCGGCAC-CA 191 ******* * ** * ** ** ** **** * **** ** * * * consensus_4277#0 GCAACCGTTCGACC-ATGTGCCTCGCGGCGTTGAGGAGGTTGGTGAGATGGAGGAGGACG 297 consensus_4277#1 CCATCCGCGCCATCGACGCAGCCCAGCCGTTCGACTACGAGTCCCGCGCGGCGGGGCTCC 251 ** *** * * * * * * * * ** * * ** ** * * consensus_4277#0 AGGAGCGGCGGAGGCGGAGGGGTCTCAAGATCGCCGTCGTGGGGTTTGGGAACTATGGGC 357 consensus_4277#1 TGGAGGAGCGGCAGCGG------CTCAAGATCGCCATCGTCGGGTTCGGCAACTTCGGCC 305 **** **** **** ************ **** ***** ** **** ** * consensus_4277#0 AGTTCCTGACCAGGACGCTGGTGCGGCAGGGGCACACCGTCCTGGCGCACTCGCGCTCAG 417 consensus_4277#1 AGTTCCTCGCCCGCACCTTCGCGCGGCAGGGCCACACGCTGCTCGCCCACTCCCGCTCCG 365 ******* ** * ** * * ********* ***** * ** ** ***** ***** * consensus_4277#0 ACTACTCCGCCGTGGCGGCCGAGCTCGGCGCGACGTACTTCACCGACGCGCACGATCTCG 477 consensus_4277#1 ACTACTCCTCCCTCGCCGCATCCGTCGGCGCGTCCTACTTCCAGGACCCGCACGACCTCT 425 ******** ** * ** ** ******** * ****** *** ******* *** consensus_4277#0 TCGAGTGCCACCCGGATGTGGTGCTCCTCGTCACCTCCATCCTCTCCGCCGAGGCCGTCC 537 consensus_4277#1 GCGAGTGCCACCCGGATGTGGTGCTCCTCGCCACCTCCATCCTCTCCGCCGAGGGCGTCC 485 ***************************** *********************** ***** consensus_4277#0 TCCGCTCGCTCCCCGTCCACCGCCTCCGCCGCGACACCCTCTTCGCCGACGTGCTCTCCG 597 consensus_4277#1 TCCGGTCGCTCCCCGTCCACCGCCTCCGCCGCAACACCCTCTTCGTCGACGTGCTCTCCG 545 **** *************************** ************ ************** consensus_4277#0 TCAAGGAGTTCCCCAGGAACCTCCTCCTCGGCACGCTCCCGGAGGAGTTCGACATCATCT 657 consensus_4277#1 TCAAGGAGTTCCCCCAGAACCTCCTCCTCGGCTCGCTCC--------------------- 584 ************** **************** ****** consensus_4277#0 GCACCCACCCTATGTTCGGCCCGGAGTCCGCGGGCGACGGGTGGGGCGGCCTCCCCTTCG 717 consensus_4277#1 ------------------------------------------------------------ consensus_4277#0 TGTTCGACAAGGTCCGCGTCGGCGACTGCCCGGCGCGCCGCGCCCGCGCCGAGGCCTTCC 777 consensus_4277#1 ------------------------------------------------------------ consensus_4277#0 TCGACATCTTCGCGCGCGA 796 consensus_4277#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||