cluster # 4298

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4298 cluster # 4298 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4298#0 length = 793 sequences # 2

consensus_4298#1 length = 617 sequences # 1

consensusID : consensus_4298#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence

                              [AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGCCGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACACCAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGCCTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGTGAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGTGGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGACAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGGTCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCATGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACATTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTCTGTCTGAC-GAAGGGTTTCGATTCTTCAACT-TC-AGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAAC-TTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTAGGTGTAAGGTATAGTTGTTATGTGGCAAAATAC-CTAGTCTGAACCGATTCCTCTGTTGTGTGTTAATTGCC]

[+] EMBL AK110693             [AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGCCGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACACCAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGCCTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGTGAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGTGGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGACAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGGTCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCATGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACATTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTCTGTCTGAC GAAGGGTTTCGATTCTTCAACT TC AGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAAC TTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTAGGTGTAAGGTATAGTTGTTATGTGGCAAAATAC CTAGTCTGAACCGATTCCTCTGTTGTGTGTTAATTGCC]
[+] EMBL BI796649             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTCTGTCTGACAGAAGGATTTCGATGCTTCAACTCTCAAGTTCCTCTTTCTTCTTCAGCAGTAGAGTGAACATTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTCTATGTGTAAGGTATAGTTGTTATGTGGCAAAATACACTAGTCTGAACCGATTCCTCTGTTGTGTG         ]




>consensus_4298#0
AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGC
CGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACAC
CAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGC
CTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGT
GAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGT
GGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGA
CAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGG
TCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCA
TGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACA
TTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTC
TGTCTGACGAAGGGTTTCGATTCTTCAACTTCAGTTCCTCTTTCTTCTTCAGCAGTAGAG
TGAACTTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTC
TAGGTGTAAGGTATAGTTGTTATGTGGCAAAATACCTAGTCTGAACCGATTCCTCTGTTG
TGTGTTAATTGCC

consensusID : consensus_4298#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 617
fasta sequence

                              [GGGAGGAGCTGCTNCAGCGGNTANGCGGCAGGNGGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCACAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGGNCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCATGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACATNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTCTGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAGTGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTCTATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTGTGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATNCTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN]

[+] EMBL CA766160             [GGGAGGAGCTGCTNCAGCGGNTANGCGGCAGGNGGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCACAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGGNCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCATGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACATNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTCTGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAGTGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTCTATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTGTGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATNCTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN]




>consensus_4298#1
GGGAGGAGCTGCTNCAGCGGNTANGCGGCAGGNGGCCCGCGCGGCAGTCGTGGNGGAGAT
CAGGTGGCGGCGGAGGCACGANGACGCCCGNCACAANCGCAAGCGCAAGGCCCGCTCCGC
CGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGGNCCGNNCCCATTTGNTGACGANCAGNA
ACCANNGGAGGNGATCATGGAGGATGATAAGCATGACAANTGGNAGCTTCCTGNAGGAGA
GCTCCCTTCTTACAGNTGAACCGNNNAATGACATNGATGTTNTTTTGNAGCTCGCTTCTT
ACAGNTGAACTTAAAAATGGCNCTGATGTTNTCTGTCTGACGAAGGATTNCGATGCTNCA
ACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAGTGAACTTACCCAACACAACCCTAGTTG
ATCTGNGACCAANATTTANTGAACTNGCATTTCTATGAGTAAGGNATAGTTGTTATGAGG
CAAAATACCTANTCTGAACCGANTCCTCTGCTGTGNGNTAATTGCCAANTNGCTNCATGA
GCCTNNGCCTTNTTCTCTGCTNAACTTCTGATNCTGCTAGTGCTGCTGGTGACTTACAAN
TTGCAGCGAAGNGATGN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4298#0      AAGCCCACCAACCTCTGCGTCCCCGTCGCCGGCGACCACCACCATGTGCGCCGCCGCCGC 60
consensus_4298#1      ------------------------------------------------------------
                                                                                  

consensus_4298#0      CGCAGCCGCCACCGCGGGGATCATCTCACCGCCTACACCTAGTCTCCTCTGGGCGAACAC 120
consensus_4298#1      ------------------------------------------------------------
                                                                                  

consensus_4298#0      CAGGGCCACCTTCGTCTCCTTCCCGCGGCGATCGCCTCCCACGACCTCCCTCCTCTCGGC 180
consensus_4298#1      ------------------------------------------------------------
                                                                                  

consensus_4298#0      CTCCTCCGCCCCGGCCCCCGCCCCGCCGTCGGCCAACCCCAAGTACCACAACGCGAAGGT 240
consensus_4298#1      ------------------------------------------------------------
                                                                                  

consensus_4298#0      GAACGCGGGCGACGAGGAGGTGGACGGGGAGGAGCTGCTTCAGCGGTTCAGGCGGGAGGT 300
consensus_4298#1      --------------------------GGGAGGAGCTGCTNCAGCGGNT-ANGCGGCAGGN 33
                                                ************* ****** * * **** *** 

consensus_4298#0      GGCCCGTGCGGGAGTCATGGAGGAGATCAGGTGGCGGCGGAGGCACGAGGACGCCCGGGA 360
consensus_4298#1      GGCCCGCGCGGCAGTCGTGGNGGAGATCAGGTGGCGGCGGAGGCACGANGACGCCCGNCA 93
                      ****** **** **** *** *************************** ********  *

consensus_4298#0      CAAGCGCAAGCGCAAGGCCCGCTCCGCCGCCCGGAGGTTTCGCCGGAGGCATTTCAAGGG 420
consensus_4298#1      CAANCGCAAGCGCAAGGCCCGCTCCGCCGCCCGNNGGTTNCNCCGGNGGCATTTNAAGGG 153
                      *** *****************************  **** * **** ******* *****

consensus_4298#0      TCCGTACCCATTTGGTGACGAGCAGGAACCAAAGGAGGGGATCATGGAGGATGATAAGCA 480
consensus_4298#1      NCCGNNCCCATTTGNTGACGANCAGNAACCANNGGAGGNGATCATGGAGGATGATAAGCA 213
                       ***  ******** ****** *** *****  ***** *********************

consensus_4298#0      TGACAATTGGGAGCTTCCTGGAGGAGAGCTCCCTTCTTACAGATGAACCGATAAATGACA 540
consensus_4298#1      TGACAANTGGNAGCTTCCTGNAGGAGAGCTCCCTTCTTACAGNTGAACCGNNNAATGACA 273
                      ****** *** ********* ********************* *******   *******

consensus_4298#0      TTGATGTTCTTTTGGAGCTCGCTTCTTACAGATGAACTTAAAAATGGCACTGATGTTTTC 600
consensus_4298#1      TNGATGTTNTTTTGNAGCTCGCTTCTTACAGNTGAACTTAAAAATGGCNCTGATGTTNTC 333
                      * ****** ***** **************** **************** ******** **

consensus_4298#0      TGTCTGACGAAGGGTTTCGATTCTTCAACTTCAGTTCCTCTTTCTTCTTCAGCAGTAGAG 660
consensus_4298#1      TGTCTGACGAAGGATTNCGATGCTNCAACTTCAGNTCCTCTTTCTTCTTCANCAGNAGAG 393
                      ************* ** **** ** ********* **************** *** ****

consensus_4298#0      TGAACTTACCCAACACAACCCTAGTTGATCTGTGACCAATATTTAGTGAACTTGCATTTC 720
consensus_4298#1      TGAACTTACCCAACACAACCCTAGTTGATCTGNGACCAANATTTANTGAACTNGCATTTC 453
                      ******************************** ****** ***** ****** *******

consensus_4298#0      TAGGTGTAAGGTATAGTTGTTATGTGGCAAAATACCTAGTCTGAACCGATTCCTCTGTTG 780
consensus_4298#1      TATGAGTAAGGNATAGTTGTTATGAGGCAAAATACCTANTCTGAACCGANTCCTCTGCTG 513
                      ** * ****** ************ ************* ********** ******* **

consensus_4298#0      TGTGTTAATTGCC----------------------------------------------- 793
consensus_4298#1      TGNGNTAATTGCCAANTNGCTNCATGAGCCTNNGCCTTNTTCTCTGCTNAACTTCTGATN 573
                      ** * ********                                               

consensus_4298#0      --------------------------------------------
consensus_4298#1      CTGCTAGTGCTGCTGGTGACTTACAANTTGCAGCGAAGNGATGN 617