These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1573 fasta sequence [GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGTGGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTTCTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACATCTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGGCTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCACATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGACTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTACCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGCTGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGGATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAGTTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCCTTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTTGGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTTGGTAACTTCAAAGTTCAAACCA] [+] EMBL AK070893 [GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGTGGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTTCTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACATCTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGGCTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCACATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGACTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTACCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGCTGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGGATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAGTTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCCTTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTTGGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTTGGTAACTTCAAAGTTCAAACCA] [+] EMBL CA754923 [ ACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGTTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCCACCTATCATCATTCAAGCTTTCCAGTTTTTGGTTGCAATGCTTGTCATGGATTCATGGCAGTATTTTGTGCACCGCTACATGCACCAGAACAAATTCCTCTATCGGCATATCC TTCACAACATCATCGGCTGATAGTTCCCTACGCCATTGGGGGTCTCTACA ] consensusID : consensus_4308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGGCTGGATCCCTATAAGCCGTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTGCAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAGGTCCCTGGCATCATGAGAGCCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTATGTATAGGTGTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCCCTAGGCCATGTACATATTACCATGTGATGTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCTC] [+] EMBL AK110696 [TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGATTCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAAAAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAAAATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTGCGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAGCGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGATGGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCTGTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTACAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGTCCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGGCTGGATCCCTATAAGCCGTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTGCAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAGGTCCCTGGCATCATGAGAGCCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTATGTATAGGTGTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCCCTAGGCCATGTACATATTACCATGTGATGTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4308#0 GAGATGAAGCCCTACCTTTTGATTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGAT 60 consensus_4308#1 ----------------------TTGGGATTTGCTCTTGAATCTGCTTCCAAACCATCGAT 38 ************************************** consensus_4308#0 TCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAA 120 consensus_4308#1 TCATCATCCATCTCTTCCAGTCTTCCTTCGCATTCTCCTGGAAAAAAATCAGAAAAGAAA 98 ************************************************************ consensus_4308#0 AAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGTTGTCCCAACAAA 180 consensus_4308#1 AAGGAAAAATCTCTTGTACTCTCCTCGATTCTGCAATTTTTGTTTGGCTGTCCCAACAAA 158 *********************************************** ************ consensus_4308#0 AATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTG 240 consensus_4308#1 AATCCCCCAATTCTCCCCAAGAACAGGAGCACACGACCCTGTTCCTGTCCCCTAGATCTG 218 ************************************************************ consensus_4308#0 CGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAG 300 consensus_4308#1 CGTGGAGGCGGCGAGAAAACCTCAATCCGGCACAAGGGGCTTGTGGTTGATACCCCGGAG 278 ************************************************************ consensus_4308#0 CGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGAT 360 consensus_4308#1 CGCCGTCTAATTCCAATCTTGGTAGCTGCCGGCGGTGCTTCCGGTGGTAGACGAGGAGAT 338 ************************************************************ consensus_4308#0 GGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCT 420 consensus_4308#1 GGTGCCGTGGGAAGGGTATGTGAGCGACGAGACGATGGGGACGTTCGCGCCCATCGCGCT 398 ************************************************************ consensus_4308#0 GTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTA 480 consensus_4308#1 GTACTGGGTGTACGCCGGCGGCTACCAGCTGGTGCTGCACCGGCGGCCGCTGGAGCGGTA 458 ************************************************************ consensus_4308#0 CAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGT 540 consensus_4308#1 CAGGCTCCACACGCGGGCGGAGGAGGAGGAGAAGAACCTCGTCGCCCTCCCCGCCGTCGT 518 ************************************************************ consensus_4308#0 CCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGG- 599 consensus_4308#1 CCGCGGCGTGCTCCTGCAGCAGCTCGTGCAGGCCATCGTCGCCATGATCCTCTTCATGGG 578 *********************************************************** consensus_4308#0 -TTACTTCAGATAGTTCAGCAGTTGTAGTTCAGCC-----ACCTATCATCATTCAAGCTT 653 consensus_4308#1 CTGGATCCCTATAAGCC-GTAGGCGTCGCTCTGGCCTGGCATCCAGCACCACCAAAACTG 637 * * * *** * * ** ** * ** * * * * * ** ** ** ** consensus_4308#0 TCCAGT-TTTTGGTTGCAATGCTTGTCATGGATTCATG-GCAGTATTTTGTGCACCGCTA 711 consensus_4308#1 CAAGCTGTTCCTGCTGCAAAATAAGTTAACGCCTGTTGAGTACTGCCCGATTCAG-GTCC 696 * ** * ***** ** * * * ** * * * * ** * consensus_4308#0 CATGCACCAGAACAAATTCCTCTATCGGCATATCCATTCACAACATCATCGGCTGATAGT 771 consensus_4308#1 CTGGCATCATGAGAG--CCTGGAGGTTATATTTTGTGTCATATATACAACACCTATTGTA 754 * *** ** * * * ** * *** * ** * ** * consensus_4308#0 TCCCTACGCCATTGGGGCTCTCTACAACCATCCATTGGAGGGACTCCTTCTGGACACCGT 831 consensus_4308#1 TGTATAGGT--GTGCACCTTTTTTTTTGTTTTTGTTGTAATTAAGCC--CTAGGCCATGT 810 * ** * ** ** * * * *** * * ** ** * * ** consensus_4308#0 GGGTGGTGCTATCTCCTTCTTGGTCTCTGGCATGACACCAAGGACTTCCGTGTTCTTCTT 891 consensus_4308#1 ACATATTACCATGTGAT-----GTTACAGATTGGGAGAAACTGACTTCTATAGCCTACCT 865 * * * ** * * ** * * * * ****** * ** * * consensus_4308#0 CTGTTTTGCTGTCCTCAAGACAGTTGATGATCACTGTGGACTTTGGTTACCGTATAACAT 951 consensus_4308#1 C----------------------------------------------------------- 866 * consensus_4308#0 CTTCCAGTCCTTGTTCCAAAACAATACTGCCTATCATGATGTCCACCATCAGCTTCAAGG 1011 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 CTCAAAGTACAATTACTCTCAGCCTTTTTTCTCAATCTGGGACAGAATACTGGGGACCCA 1071 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 CATGCCCTACAACTTAGTAAGACGGAAGGAAGGCGGTTTTGAAGCAAGACCACTGCGAGA 1131 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 CTAGCTTGAACCGATGGAAGTGTATAGAACTCCAGCAACTCAGTGAGATACAATGCTCTA 1191 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 CCTCCCTTTCATATGTTTAGAACCTCATAGGGACCAATCTAACTTCGAAGATGTTGAAGC 1251 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 TGTTCAAGTACTCCCAGATTTTCTTTTTCGCGTCTTGCTGGAAGCAATACGCTAGTCGGG 1311 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 ATTTGGGAAGACACTGAAGCTCTTGCGCGATGCTTGTTCTTACACCTGCTGTTAATCTAG 1371 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 TTAGATCGGTCACCTGGAATGTGTGTGGTACTGTATGGTTTGTCTTGATGGCTTTTCTCC 1431 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 TTGTCATGGCTATTTTTTGTGCAGAGCTGGCATTTACATTGCTGTGCAGATAGTGTATTT 1491 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 GGAATCACACTTCTGTATGTACCCCCAATTATTTATGTAACTGAATATCTGGGCATGGTT 1551 consensus_4308#1 ------------------------------------------------------------ consensus_4308#0 GGTAACTTCAAAGTTCAAACCA 1573 consensus_4308#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||