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Oryza sativa
cluster # 4310 cluster # 4310       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4310#0 length = 2664 sequences # 3  

consensusID : consensus_4310#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 2664
fasta sequence
                              [TCATCTTCTGCTTGTTATAATCCTCCATTCTTTTTGCTCTTCCTCGCACTCGCAGCGCCACCAACGAAAACCCAAGGCAACGCACCACGCTGCACGCGTCCGTGGTCGCCGCGAAACTTGCGCCGCGATGGGGAGGCCGATTCACCCCCAAATCCTGCCATCCTGATCCAGTTTGATTTCTCCGTCGAGCAGCAACAGCAGCAGCGAGGATTGGGTGTGCGAAAAGGAGTCGCCTTTGAGGGATCGTGAGCAATGGCGCCGGCGTGGGATCGCGCCAAGCACGCGCTCGCCACCAGGCTCTGCATTCGCTTCCCGGCGCGGCAGAGGGCCGTGGAGGATGCACCGGCGGAAGACGAGGCGCCTCCGCCGCCTGCGGCGGCGGCGGCGCGTGCTGTGCCGGAGGAGAAGTTGAAGTCGCCATCGGTGTCCGTGCGGCGGCTTTCGAGCTCTGGGAGCTGGGGCAAGAAGAAGGTATGTGCCATTTGCCTTGGTGGCATACGGACAGGAGGACAGGCCTTGTTCACAGCTGAATGCTCCCACGAATTCCATTTTCATTGCATCTCCTCAAATGTCAACCATGGCAATTACGTCTGCCCGGTATGTCGTGCTGAGTGGAAAGAACTTCCCTTCCAAGGAACTCAACCTGGAGACACTGCTTATGGACGAGCTAGAGTAAGCACTGTAAATTGGCCCCAGGATGAGGGGCAGATGTCTGTTGTCCGCAGGCTTTCCCACGGATATAGTGGAAACCTTCAACAGCAACTTGCTGTCTTCCGTACTCCAGAGGCAAGCATTTTCAATGATGATGAGAACATTGATCCTCAGTCTGAAACAGTTGATGATCATAATGCAGTTACTAATTCAGTTGAGATCAAGACATATTCAGAATTTCCAGCCATACAAAAATCAGAAAGACGGAAGGTCTTTGCTATCTTAATACATCTGAAGGCTCCAAAGTCCTTGGACTCGGTGAGCTCCCGTGCACCTCTTGACCTTGTGACTGTGCTTGATGTCAGTGGCAGCATGTCGGGGATAAAACTTTCACTTCTTAAGCGTGCCATGAGTTTTGTCATCCAAACACTTGGACCCAATGACCGCCTGTCTGTTGTAGCCTTTTCATCTACAGCACAGAGGCTCTTTCCACTTCGCCGAATGACCTTAACTGGTCGGCAGCAAGCCTTGCAAGCCATTAGTTCCCTTGTCGCAAGTGGTGGCACAAACATTGCTGATGCGCTAAAGAAAGGTGCTAAAGTGGTCAAGGATCGTCGGCGGAAGAATCCTGTTAGCAGCATAATTCTTCTTTCTGATGGTCAAGACACCCATTCATTTCTATCTGGTGAGGCTGATATAAACTACAGTATACTTGTTCCCCCTTCAATCCTTCCTGGGACAAGTCATCATGTGCAAATCCACACCTTTGGTTTTGGTACAGACCATGATTCGGCTGCCATGCATGCTATTGCTGAGACATCTAATGGCACATTTTCATTTATTGATGCTGAAGGCTCAATCCAAGATGCATTTGCTCAATGTATGGGTGGCCTCCTTAGCGTTGTAGTTAAGGATATGCGGCTGTGCATCGAGTGTATAGATGAAGGCGTGTCTCTTACCTCCATCAAGTCAGGCAGCTATGCAAGTCAAGTAGCTGGAAATGAACGCAGTGGATTGGTTGATATTGGTGACCTCTATGCAGATGAAGAGAGGGGATTTCTGGTCACTCTACATGTCCCAGCCGCACATGGACAGACTGTGCTGATCAAACCAAAATGCACATACCTAGATGCAATAACTATGGAAAATGTCCAGCTAGACGGTGAAGAAGTGATTATTCAGCGTCCTGCATATTGTGTTGACTGTACAATGTCA-CCTGAGGTTGAGCGTGAATGGCACCGTGTTCAAGCCACAGAGGACATGTCTGCTGCTCGATCTGCGGCTGAGGATGGCTCTTTCTCTCAGGCCGTGTCAATCCTTGAAAGCCGTAGGAGAATACTGGAGTTACATGCAGCACACTCTTCAGACAGTCAGTTCTTGGCATTAATCAAAGAGCTAAGGGAGATGCAGGATAGGGT-GGAGAGCCGGCAGAGGTACGAGGAATCAGGCAGGGCTTACATGCTGTCAGGCCTGAGCTCACACTCATGGCAAAGAGCAACTGCACGTGGCGACTCGACAGAGCTCACAACCCTTATTAATACTTACCAGACACCATCCATGGTTGATATGCTACAGCGCTCGCAGACTATCCTGCCCTCTGTTGTCGAAATGCTGAACCGTTCTTCAACTGTTGCTACTTCAAAGTCCTTCTCTAGCTACCTCCCAACCTCCCGCCATATTGCTTGATCATAATGTAGTTCTAGCAATAACCAGCCAAGTGTTAGGGAAATGAAGATATCCAATTCTTTAGTTTGTTTTCTGCAGATCTTTTTCCATTATTTATAGTGGGCATGGGATTAGATTCATTATAAATGTTTGGGTATATACTCTAGTTTGGTGTACATGGGTAAACTTTGAAAGGGAATGATAAACAGCATAGCTGAAACAGGTGAAAGGAATGCTGACATTTCATTTGTTTCTCATCATCATTTTATATTAATTCTCATTTTGTACATAAAATTCTCCCTAGGGTTGTTCCAGGATGCTTGTAAGCTCTTGGCTGCATTCACACTT]

[+] EMBL AK100238             [TCATCTTCTGCTTGTTATAATCCTCCATTCTTTTTGCTCTTCCTCGCACTCGCAGCGCCACCAACGAAAACCCAAGGCAACGCACCACGCTGCACGCGTCCGTGGTCGCCGCGAAACTTGCGCCGCGATGGGGAGGCCGATTCACCCCCAAATCCTGCCATCCTGATCCAGTTTGATTTCTCCGTCGAGCAGCAACAGCAGCAGCGAGGATTGGGTGTGCGAAAAGGAGTCGCCTTTGAGGGATCGTGAGCAATGGCGCCGGCGTGGGATCGCGCCAAGCACGCGCTCGCCACCAGGCTCTGCATTCGCTTCCCGGCGCGGCAGAGGGCCGTGGAGGATGCACCGGCGGAAGACGAGGCGCCTCCGCCGCCTGCGGCGGCGGCGGCGCGTGCTGTGCCGGAGGAGAAGTTGAAGTCGCCATCGGTGTCCGTGCGGCGGCTTTCGAGCTCTGGGAGCTGGGGCAAGAAGAAGGTATGTGCCATTTGCCTTGGTGGCATACGGACAGGAGGACAGGCCTTGTTCACAGCTGAATGCTCCCACGAATTCCATTTTCATTGCATCTCCTCAAATGTCAACCATGGCAATTACGTCTGCCCGGTATGTCGTGCTGAGTGGAAAGAACTTCCCTTCCAAGGAACTCAACCTGGAGACACTGCTTATGGACGAGCTAGAGTAAGCACTGTAAATTGGCCCCAGGATGAGGGGCAGATGTCTGTTGTCCGCAGGCTTTCCCACGGATATAGTGGAAACCTTCAACAGCAACTTGCTGTCTTCCGTACTCCAGAGGCAAGCATTTTCAATGATGATGAGAACATTGATCCTCAGTCTGAAACAGTTGATGATCATAATGCAGTTACTAATTCAGTTGAGATCAAGACATATTCAGAATTTCCAGCCATACAAAAATCAGAAAGACGGAAGGTCTTTGCTATCTTAATACATCTGAAGGCTCCAAAGTCCTTGGACTCGGTGAGCTCCCGTGCACCTCTTGACCTTGTGACTGTGCTTGATGTCAGTGGCAGCATGTCGGGGATAAAACTTTCACTTCTTAAGCGTGCCATGAGTTTTGTCATCCAAACACTTGGACCCAATGACCGCCTGTCTGTTGTAGCCTTTTCATCTACAGCACAGAGGCTCTTTCCACTTCGCCGAATGACCTTAACTGGTCGGCAGCAAGCCTTGCAAGCCATTAGTTCCCTTGTCGCAAGTGGTGGCACAAACATTGCTGATGCGCTAAAGAAAGGTGCTAAAGTGGTCAAGGATCGTCGGCGGAAGAATCCTGTTAGCAGCATAATTCTTCTTTCTGATGGTCAAGACACCCATTCATTTCTATCTGGTGAGGCTGATATAAACTACAGTATACTTGTTCCCCCTTCAATCCTTCCTGGGACAAGTCATCATGTGCAAATCCACACCTTTGGTTTTGGTACAGACCATGATTCGGCTGCCATGCATGCTATTGCTGAGACATCTAATGGCACATTTTCATTTATTGATGCTGAAGGCTCAATCCAAGATGCATTTGCTCAATGTATGGGTGGCCTCCTTAGCGTTGTAGTTAAGGATATGCGGCTGTGCATCGAGTGTATAGATGAAGGCGTGTCTCTTACCTCCATCAAGTCAGGCAGCTATGCAAGTCAAGTAGCTGGAAATGAACGCAGTGGATTGGTTGATATTGGTGACCTCTATGCAGATGAAGAGAGGGGATTTCTGGTCACTCTACATGTCCCAGCCGCACATGGACAGACTGTGCTGATCAAACCAAAATGCACATACCTAGATGCAATAACTATGGAAAATGTCCAGCTAGACGGTGAAGAAGTGATTATTCAGCGTCCTGCATATTGTGTTGACTGTACAATGTCA CCTGAGGTTGAGCGTGAATGGCACCGTGTTCAAGCCACAGAGGACATGTCTGCTGCTCGATCTGCGGCTGAGGATGGCTCTTTCTCTCAGGCCGTGTCAATCCTTGAAAGCCGTAGGAGAATACTGGAGTTACATGCAGCACACTCTTCAGACAGTCAGTTCTTGGCATTAATCAAAGAGCTAAGGGAGATGCAGGATAGGGT GGAGAGCCGGCAGAGGTACGAGGAATCAGGCAGGGCTTACATGCTGTCAGGCCTGAGCTCACACTCATGGCAAAGAGCAACTGCACGTGGCGACTCGACAGAGCTCACAACCCTTATTAATACTTACCAGACACCATCCATGGTTGATATGCTACAGCGCTCGCAGACTATCCTGCCCTCTGTTGTCGAAATGCTGAACCGTTCTTCAACTGTTGCTACTTCAAAGTCCTTCTCTAGCTACCTCCCAACCTCCCGCCATATTGCTTGATCATAATGTAGTTCTAGCAATAACCAGCCAAGTGTTAGGGAAATGAAGATATCCAATTCTTTAGTTTGTTTTCTGCAGATCTTTTTCCATTATTTATAGTGGGCATGGGATTAGATTCATTATAAATGTTTGGGTATATACTCTAGTTTGGTGTACATGGGTAAACTTTGAAAGGGAATGATAAACAGCATAGCTGAAACAGGTGAAAGGAATGCTGACATTTCATTTGTTTCTCATCATCATTTTATATTAATTCTCATTTTGTACATAAAATTCTCCCTAGGGTTGTTCCAGGATGCTTGTAAGCTCTTGGCTGCATTCACACTT]
[+] EMBL CF305988             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGCTGATGCGCTAAAGAAAGGTGCTAAAGTGGTCAAGGATCGTCGGCGGAAGAATCCTGTTAGCAGCATAATTCTTCTTTCTGATGGTCAAGACACCCATTCATTTCTATCTGGTGAGGCTGATATAAACTACTTTTTTCTTGTTCCCCCTTCAATCCTTCCTGGGACAAGTCATCTTGTTCTAATCCACACCTTTGGTTTTGGTACAGACCATGATTCGGCTGCCATGCATGCTATTGCTGAGACATCTAATGGCACATTTTCATTTATTGATGCTGAAGGCTCAATCCAAGATGCATTTGCTCAATGTATGGGTGGCCTCCTTAGCGTTGTAGTTAAGGATATGCGGCTGTGCATCGAGTGTATAGATGAAGGCGTGTCTCTTACCTCCATCAAGTCAGGCAGCTATGCAAGTCAAGTAGCTGGAAATGAACGCAGTGGATTGGTTGATATTGGTGACCTCTATGCAGATGAAGAGAGGGGATTTCTGGTCACTCTACATGTCCCAGCCGCACATGGACAGACTGTGCTGATCAAACCAAAATGCACATACCTAGATGCAATAACTATGGAAAATGTCCAGCTAGACGGTGAAGAAGTGATTATTCAGCGTCCTGCATATTGTGTTGACTGTACAATGTCACCCTGA GTTGAGCGTGAATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF322593             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGATTTCTGGTCACTCTACATGTCCCAGCCGCACATGGACAGACTGTGCTGATCAAACCAAAATGCACATACCTAGATGCAATAACTATGGAAAATGTCCAGCTAGACGGTGAAGAAGTGATTATTCAGCGTCCTGCATATTGTGTTGACTGTACAATGTCA CCTGAGGTTGAGCGTGAATGGCACCGTGTTCAAGCCACAGAGGACATGTCTGCTGCTCGATCTGCGGCTGAGGATGGCTCTTTCTCTCAGGCCGTGTCAATCCTTGAAAGCCGTAGGAGAATACTGGAGTTACATGCAGCACACTCTTCAGACAGTCAGTTCTTGGCATTAATCAAAGAGCTAAGGGAGATGCAGGATAGGGTNGGAGAGCCGGCAGAGGTACGAGGAATCAGGCAGGGCTTACATGCTGTCAGGCCTGAGCTCACACTCATGGCAAAGAGCAACTGCACGTGGCGACTCGACAGAGCTCACAACCCTTATTAATACTTACCAGACACCATCCATGGTTGATATGCTACAGCGCTCGCAGACTATCCTGCCCTCTGTTGTCGAAATGCTGAACCGTTCTTCAACTGTTGCTACTTCAAAGTCCTTCTCTAGCTACCTCCCAACCTCCCGCCATATTGCTTGATCATAATGT                                                                                                                                                                                                                                                                                                                              ]


>consensus_4310#0 TCATCTTCTGCTTGTTATAATCCTCCATTCTTTTTGCTCTTCCTCGCACTCGCAGCGCCA CCAACGAAAACCCAAGGCAACGCACCACGCTGCACGCGTCCGTGGTCGCCGCGAAACTTG CGCCGCGATGGGGAGGCCGATTCACCCCCAAATCCTGCCATCCTGATCCAGTTTGATTTC TCCGTCGAGCAGCAACAGCAGCAGCGAGGATTGGGTGTGCGAAAAGGAGTCGCCTTTGAG GGATCGTGAGCAATGGCGCCGGCGTGGGATCGCGCCAAGCACGCGCTCGCCACCAGGCTC TGCATTCGCTTCCCGGCGCGGCAGAGGGCCGTGGAGGATGCACCGGCGGAAGACGAGGCG CCTCCGCCGCCTGCGGCGGCGGCGGCGCGTGCTGTGCCGGAGGAGAAGTTGAAGTCGCCA TCGGTGTCCGTGCGGCGGCTTTCGAGCTCTGGGAGCTGGGGCAAGAAGAAGGTATGTGCC ATTTGCCTTGGTGGCATACGGACAGGAGGACAGGCCTTGTTCACAGCTGAATGCTCCCAC GAATTCCATTTTCATTGCATCTCCTCAAATGTCAACCATGGCAATTACGTCTGCCCGGTA TGTCGTGCTGAGTGGAAAGAACTTCCCTTCCAAGGAACTCAACCTGGAGACACTGCTTAT GGACGAGCTAGAGTAAGCACTGTAAATTGGCCCCAGGATGAGGGGCAGATGTCTGTTGTC CGCAGGCTTTCCCACGGATATAGTGGAAACCTTCAACAGCAACTTGCTGTCTTCCGTACT CCAGAGGCAAGCATTTTCAATGATGATGAGAACATTGATCCTCAGTCTGAAACAGTTGAT GATCATAATGCAGTTACTAATTCAGTTGAGATCAAGACATATTCAGAATTTCCAGCCATA CAAAAATCAGAAAGACGGAAGGTCTTTGCTATCTTAATACATCTGAAGGCTCCAAAGTCC TTGGACTCGGTGAGCTCCCGTGCACCTCTTGACCTTGTGACTGTGCTTGATGTCAGTGGC AGCATGTCGGGGATAAAACTTTCACTTCTTAAGCGTGCCATGAGTTTTGTCATCCAAACA CTTGGACCCAATGACCGCCTGTCTGTTGTAGCCTTTTCATCTACAGCACAGAGGCTCTTT CCACTTCGCCGAATGACCTTAACTGGTCGGCAGCAAGCCTTGCAAGCCATTAGTTCCCTT GTCGCAAGTGGTGGCACAAACATTGCTGATGCGCTAAAGAAAGGTGCTAAAGTGGTCAAG GATCGTCGGCGGAAGAATCCTGTTAGCAGCATAATTCTTCTTTCTGATGGTCAAGACACC CATTCATTTCTATCTGGTGAGGCTGATATAAACTACAGTATACTTGTTCCCCCTTCAATC CTTCCTGGGACAAGTCATCATGTGCAAATCCACACCTTTGGTTTTGGTACAGACCATGAT TCGGCTGCCATGCATGCTATTGCTGAGACATCTAATGGCACATTTTCATTTATTGATGCT GAAGGCTCAATCCAAGATGCATTTGCTCAATGTATGGGTGGCCTCCTTAGCGTTGTAGTT AAGGATATGCGGCTGTGCATCGAGTGTATAGATGAAGGCGTGTCTCTTACCTCCATCAAG TCAGGCAGCTATGCAAGTCAAGTAGCTGGAAATGAACGCAGTGGATTGGTTGATATTGGT GACCTCTATGCAGATGAAGAGAGGGGATTTCTGGTCACTCTACATGTCCCAGCCGCACAT GGACAGACTGTGCTGATCAAACCAAAATGCACATACCTAGATGCAATAACTATGGAAAAT GTCCAGCTAGACGGTGAAGAAGTGATTATTCAGCGTCCTGCATATTGTGTTGACTGTACA ATGTCACCTGAGGTTGAGCGTGAATGGCACCGTGTTCAAGCCACAGAGGACATGTCTGCT GCTCGATCTGCGGCTGAGGATGGCTCTTTCTCTCAGGCCGTGTCAATCCTTGAAAGCCGT AGGAGAATACTGGAGTTACATGCAGCACACTCTTCAGACAGTCAGTTCTTGGCATTAATC AAAGAGCTAAGGGAGATGCAGGATAGGGTGGAGAGCCGGCAGAGGTACGAGGAATCAGGC AGGGCTTACATGCTGTCAGGCCTGAGCTCACACTCATGGCAAAGAGCAACTGCACGTGGC GACTCGACAGAGCTCACAACCCTTATTAATACTTACCAGACACCATCCATGGTTGATATG CTACAGCGCTCGCAGACTATCCTGCCCTCTGTTGTCGAAATGCTGAACCGTTCTTCAACT GTTGCTACTTCAAAGTCCTTCTCTAGCTACCTCCCAACCTCCCGCCATATTGCTTGATCA TAATGTAGTTCTAGCAATAACCAGCCAAGTGTTAGGGAAATGAAGATATCCAATTCTTTA GTTTGTTTTCTGCAGATCTTTTTCCATTATTTATAGTGGGCATGGGATTAGATTCATTAT AAATGTTTGGGTATATACTCTAGTTTGGTGTACATGGGTAAACTTTGAAAGGGAATGATA AACAGCATAGCTGAAACAGGTGAAAGGAATGCTGACATTTCATTTGTTTCTCATCATCAT TTTATATTAATTCTCATTTTGTACATAAAATTCTCCCTAGGGTTGTTCCAGGATGCTTGT AAGCTCTTGGCTGCATTCACACTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)