These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1725 fasta sequence [TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGGAACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAGAGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGGCACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAACGCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCACCTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTCCATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAGATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTCGCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTAGTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTCACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATTAAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTTGCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATGACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTTGCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAGAATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGGAAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTCCACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCTAATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGCAGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTGGGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAGGGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAAAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCCTTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACACTGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG] [+] EMBL AK071206 [TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGGAACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAGAGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGGCACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAACGCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTCTACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCACCTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTCCATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAGATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTCGCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTAGTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTCACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATTAAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTTGCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATGACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTTGCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAGAATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGGAAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTCCACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCTAATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGCAGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTGGGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAGGGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAAAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCCTTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACACTGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG] consensusID : consensus_4312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 275 fasta sequence [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754883 [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAGACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754836 [AAATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTGTATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGGAGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCANAGACTGATCCTCAna ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4312#0 TTTGGTGCGAATTTCGGAGGAAATTCGGTGGGAATTTTCGGGAGGTGGAGGAAGAGAGGG 60 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AACGCGGCGATCTTTGCGGCGACGACGATGCTGCTGCGGTGGCTGGCGCGGCCGGCGGAG 120 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AGGTGCCTGGGGCGAGGCGGCGGCGGCGGCGGAGGGGGAGGAGGGGATGGGTTGCTGTGG 180 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 CACGCGGAGCTGAAGCCGCACGCGAGCGGAGAGTACTCCATCGCGGTGGCGCAGGCGAAC 240 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GCGGAGCTGGAGGACCAGGGGCAGGTGGTGACCTCGCCGGCGGCGACCTTCGTCGGCGTC 300 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 TACGACGGCCACGGTGGCCCCGAGGCGTCCCGCTTCATCTCCTCCCGCCTCTTCCCCCAC 360 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 CTCCACAGGTTTGCATCTGAGCAAGGTGGCATGTCCACCGATGCAATCAAGAGGGCATTC 420 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 CATGCCACGGAGGAGGAGTTCTTGCACATGGTCAAGCGATCCTGGCTCAAGCAGCCACAG 480 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 ATTGCCTCGGTTGGTTCATGCTGCCTCGTCGGAGCAATCACCGATAACGTTCTATATGTC 540 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GCCAATTTAGGGGACTCGAGGGCCGTCCTTGGCCGTAGGGGGCCTGATGGTCGGGAGGTA 600 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GTGGCTGAGAGACTATCCAATGACCACAATGTTGCAGAGGAGGAGGTCAGAAAGGAGCTC 660 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 ACTGAGCAGCATCCTGATGATTCACGTATAGTCATCTATACCCGAGGAGTTTGGAGGATT 720 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AAGGGCATCATTCAGGTTTCCAGATCAATTGGAGATGTATACCTGAAGAAGCCTGAATTT 780 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GCTAGAGACCCTATATTCCGGCAATATGTTTGTTCCATTCCATTGAAGCGACCTGTCATG 840 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 ACGGCTGAACCATCGATCAAAGAACATCAGTTGAGGCAGCAAGACTTATTCTTGATATTT 900 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GCATCGGATGGTCTGTGGGAGCAGCTAACTGATAAAGCAGCGGTTGATATCGTCTTCAAG 960 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AATCCCAGAGCAGGGATAGCGAAGCGATTGGTGCGAGCAGCGCTGACTGAAGCGGCGAGG 1020 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AAACGAGAGATGAGATACACTGATATCAAACATATAGAGAGAGGCAGCAGGCGGAATTTC 1080 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 CACGACGATATCACAGTCGTTGTGGTCTATCTTGACCATCACAAGCATGGTGTGCGGCCT 1140 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AATTTGGGTAACAGAAACAGTTTCCGGTTCACCAATGCGCCGGTTGACATCTTCTCCGGC 1200 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 AGCTCAGAAGAGGTGGATCACCACCCTCTCAGGCTGAATCTTGCAATGGATGGTGCTGTG 1260 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GGTTAGGTTTGTGTTTTTGCATAAAAAACCAAATATAGTCAAAAGAAAAGTGACAAAAAG 1320 consensus_4312#1 ------------------------------------------------------------ consensus_4312#0 GGTGAATTCTCTTTTCTGTCACATAGATTGAGCCAAACACAACTTTCACCAAGATATCAA 1380 consensus_4312#1 -----------------------------------------------------------A 1 * consensus_4312#0 AATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTG 1440 consensus_4312#1 AATATGGGATGCATTTAGAGGTTTGAGGTTTTGCTTTTCATTTTTTACATAGTGGGTTTG 61 ************************************************************ consensus_4312#0 TATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGG 1500 consensus_4312#1 TATAAAGTTGTCCTAGACTCCAAACGAATGTCTCTTCTCCAAGCAAGTTGATGTTTCTGG 121 ************************************************************ consensus_4312#0 AGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAG 1560 consensus_4312#1 AGAAAGAGTCTCATTCCTTTTGGAGATTATTGTGGCCTTGTGGGGGATCAATCATCAAAG 181 ************************************************************ consensus_4312#0 ACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAAATCCTCATGGATCC 1620 consensus_4312#1 ACTGATCCTCAAAACAGAAAAAGGAAAATCTAAAGATTGTTCCTAANAAAAAAAAAAAAA 241 ********************************************** * * consensus_4312#0 TTTGCATATCTAACAAGCTAAGGATTGTTTTTTCTTTGATCCTGAAGATGTGTAGAACAC 1680 consensus_4312#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 275 * * ** ** ** * consensus_4312#0 TGTGAATGGATTCAAGATTCCAAAAATATATAAATACAACCTGAG 1725 consensus_4312#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||