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Oryza sativa
cluster # 4315 cluster # 4315       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4315#0 length = 1022 sequences # 3  

consensusID : consensus_4315#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1022
fasta sequence
                              [TCACCATCGGTTTCTTCCTTAGGTTTCTTCTCCTGAGAGGCAGTAGCAGGGGTTCTTCCCATCATGGGGACTCGCTTAGTTCCTCGGGAAACTGCAGCTCTTCTCGGTGCTTTCGTTGCGCTTCTGGCCGTCAGCTTCGGCGCCGTGGCGGCGCCGGCGCCGCTCGTGGTTGGCTCCATCAAGTGCTTGG-ATTGCTCTCCCGACGACGTCAAAGCTGAGGATGCGTTCAGAGGGCTTCAAGTAGGCATCATGTGCAACTCCGGCGCCGGCGAGGCCTACGAGACGAAGATGCTCAGCGGCCTCGACGAGAACGGCGGCTTCAGCATCCCGCTCGCCGCCGACCTCCTCCGCGACGACGGCGAGCTGGACAAGGACTGCTTCGCACAGCTCCACAGCGCGCCGGAGACGCCGTGCGCCGGACAGACCCCGCCCAGGATCGCCAAGGCCGGGCCTGGCAACGACACCATCGCCGCCGCCGCCGCTGACGCCGCGCCGACCTACCTCGCGGTCTCCGACGACACGTTATTCTCTCCCGTCGCGTGCAAGTGCGGCAAGTACAAGAAGAAGTTCATGTTCGCCCCGCCGCCGCCGCCGCCGCCCAGGCCACCGGCCCCGGAGTACAAGCCCCCGACACCGACACTGACTCCGATTCCGACGCCGGAGCCATCGTACGGGCCACCGGCGCCGAAGCCACCAGCTCCGCCGGTGGAGGACGAGCCGCAGCCGTTCTTCCACAAGCACCCGAAGCTCAAGTTCATGCACAAGAAGAAGCCGTGCCCGCCGCTCGTCGACGTGGACATTCCCCGGCCCAACAACTGAGCTGCACGCGACACGACGCAGCAAAGCTCGATCTAATTAAGGATGCCGTCGAGTCGTTGTAGTTTGTGTTTGTCACGTCGCAGTTTTCGTTAGTGTTTTGTTTGGTTTGGTTCGTGCTGTTTGTGCTGGCATTGCAGTTTCAGACTTTCAGTTCGTTGCTTTGTTTGTGAAATAAAGATTGTGGTCTATTCAGAGGGTAAAAA]

[+] EMBL AK059409             [TCACCATCGGTTTCTTCCTTAGGTTTCTTCTCCTGAGAGGCAGTAGCAGGGGTTCTTCCCATCATGGGGACTCGCTTAGTTCCTCGGGAAACTGCAGCTCTTCTCGGTGCTTTCGTTGCGCTTCTGGCCGTCAGCTTCGGCGCCGTGGCGGCGCCGGCGCCGCTCGTGGTTGGCTCCATCAAGTGCTTGG ATTGCTCTCCCGACGACGTCAAAGCTGAGGATGCGTTCAGAGGGCTTCAAGTAGGCATCATGTGCAACTCCGGCGCCGGCGAGGCCTACGAGACGAAGATGCTCAGCGGCCTCGACGAGAACGGCGGCTTCAGCATCCCGCTCGCCGCCGACCTCCTCCGCGACGACGGCGAGCTGGACAAGGACTGCTTCGCACAGCTCCACAGCGCGCCGGAGACGCCGTGCGCCGGACAGACCCCGCCCAGGATCGCCAAGGCCGGGCCTGGCAACGACACCATCGCCGCCGCCGCCGCTGACGCCGCGCCGACCTACCTCGCGGTCTCCGACGACACGTTATTCTCTCCCGTCGCGTGCAAGTGCGGCAAGTACAAGAAGAAGTTCATGTTCGCCCCGCCGCCGCCGCCGCCGCCCAGGCCACCGGCCCCGGAGTACAAGCCCCCGACACCGACACTGACTCCGATTCCGACGCCGGAGCCATCGTACGGGCCACCGGCGCCGAAGCCACCAGCTCCGCCGGTGGAGGACGAGCCGCAGCCGTTCTTCCACAAGCACCCGAAGCTCAAGTTCATGCACAAGAAGAAGCCGTGCCCGCCGCTCGTCGACGTGGACATTCCCCGGCCCAACAACTGAGCTGCACGCGACACGACGCAGCAAAGCTCGATCTAATTAAGGATGCCGTCGAGTCGTTGTAGTTTGTGTTTGTCACGTCGCAGTTTTCGTTAGTGTTTTGTTTGGTTTGGTTCGTGCTGTTTGTGCTGGCATTGCAGTTTCAGACTTTCAGTTCGTTGCTTTGTTTGTGAAATAAAGATTGTGGTCTA               ]
[+] EMBL C74405               [       CGGTTTCTTCCTTAGGTTTCTTCTCCTGAGAGGCAGTAGCAGGGGTTCTTCCCATCATGGGGACTCGCTTAGTTCCTCGGGAAACTGCAGCTCTTCTCGGTGCTTTCGTTGCGCTTCTGGCCGTCAGCTTCGGCGCCGTGGCGGCGCGGCCGCGGCTCGTGGTTGGCTCAATCAAGTGCTTGGAATTGCTCTCCCGACGACGTCAAAGCTGAGGATGCGTTAAAAGGGCTTCAATAAGGAATAATGTGCAANNCCGG GGCGGCGAAGGCTAAGAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU101429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GCGTGCAAGTGCGGCAAGTACAAGAAGAAGTTCATGTTCGCCCCGCCGCCGCCGCCGCCGCCCAGGCCACCGGCCCCGGAGTACAAGCCCCCGACACCGACACTGACTCCGATTCCGACGCCGGAGCCATCGTACGGGCCACCGGCGCCNAAGCCACCAG TCCGCCGGTGGAGGACGAGCCGCAGCCGTTCTTCCACAAGCACCCGAAGCTCAAGTTCATGCACAAGAAGAAGCCGTGCCCGCCGCTCGTCGACGTGGACATTCCCCGGCCCAACAACTGAGCTGCACGCGACACGACGCAGCAAAGCTCGATCTAATTAAGGATGCCGTCGAGTCGTTGTAGTTTGTGTTTGTCACGTCGCAGTTTTCGTTAGTGTTTTGTTTGGTTTGGTTCGTGCTGTTTGTGCTGGCATTGCAGTTTCAGACTTTCAGTTCGTTGCTTTGTTTGTGAAATAAAGATTGTGGTCTATTCAGAGGGTAAAAA]


>consensus_4315#0 TCACCATCGGTTTCTTCCTTAGGTTTCTTCTCCTGAGAGGCAGTAGCAGGGGTTCTTCCC ATCATGGGGACTCGCTTAGTTCCTCGGGAAACTGCAGCTCTTCTCGGTGCTTTCGTTGCG CTTCTGGCCGTCAGCTTCGGCGCCGTGGCGGCGCCGGCGCCGCTCGTGGTTGGCTCCATC AAGTGCTTGGATTGCTCTCCCGACGACGTCAAAGCTGAGGATGCGTTCAGAGGGCTTCAA GTAGGCATCATGTGCAACTCCGGCGCCGGCGAGGCCTACGAGACGAAGATGCTCAGCGGC CTCGACGAGAACGGCGGCTTCAGCATCCCGCTCGCCGCCGACCTCCTCCGCGACGACGGC GAGCTGGACAAGGACTGCTTCGCACAGCTCCACAGCGCGCCGGAGACGCCGTGCGCCGGA CAGACCCCGCCCAGGATCGCCAAGGCCGGGCCTGGCAACGACACCATCGCCGCCGCCGCC GCTGACGCCGCGCCGACCTACCTCGCGGTCTCCGACGACACGTTATTCTCTCCCGTCGCG TGCAAGTGCGGCAAGTACAAGAAGAAGTTCATGTTCGCCCCGCCGCCGCCGCCGCCGCCC AGGCCACCGGCCCCGGAGTACAAGCCCCCGACACCGACACTGACTCCGATTCCGACGCCG GAGCCATCGTACGGGCCACCGGCGCCGAAGCCACCAGCTCCGCCGGTGGAGGACGAGCCG CAGCCGTTCTTCCACAAGCACCCGAAGCTCAAGTTCATGCACAAGAAGAAGCCGTGCCCG CCGCTCGTCGACGTGGACATTCCCCGGCCCAACAACTGAGCTGCACGCGACACGACGCAG CAAAGCTCGATCTAATTAAGGATGCCGTCGAGTCGTTGTAGTTTGTGTTTGTCACGTCGC AGTTTTCGTTAGTGTTTTGTTTGGTTTGGTTCGTGCTGTTTGTGCTGGCATTGCAGTTTC AGACTTTCAGTTCGTTGCTTTGTTTGTGAAATAAAGATTGTGGTCTATTCAGAGGGTAAA AA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)