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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence
[TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAAGGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAATGCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATTAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGT]
[+] EMBL AK062956 [TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAAGGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAATGCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATTAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGT]
consensusID : consensus_4323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence
[TTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATGAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTTCAA]
[-] EMBL CB632419 [TTAAAATTGGTAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAATGAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCCATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAACTTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGATGCTGAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTACAGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAGAAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTTGTCCAAAGTTTTTAGTGCTGATTGTCAGGGATTATGAGTTCCAGTGCGAACCATCGAACTACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTCGCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCACAGTTAACTTTTCTGACCGCGTTTCTGTACAGCGTTTTTGTACCTGTAAAGTGGCTTCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGTGAAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTTCAA]
consensusID : consensus_4323#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[ATTGTCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAGCATGAAAACATTGTTCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCTTGAACTAGTAACTCAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGTCTCAGCGTACACAAGGCAGATTTTGATAGGTTTGAACTATCTACACCAGCGGAACGTGTTACACAGAGATATTAAATGTGCAAATATCCTAGTGGATTCAAATGGATTAGTTAAACTGGCAGATTTTGGGCTTGCAAAAGAGATGTCAATTTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATTTACCTTACGCTCCTATTCAGAAGAGTGTAGGTGCTTTACCATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCACCTCTTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACGGTCTTGCAAGTTCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGAGCGTGTAAATTTTCTGATAGCAT]
[+] EMBL CF322708 [ATTGTCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAGCATGAAAACATTGTTCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCTTGAACTAGTAACTCAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGTCTCAGCGTACACAAGGCAGATTTTGATAGGTTTGAACTATCTACACCAGCGGAACGTGTTACACAGAGATATTAAATGTGCAAATATCCTAGTGGATTCAAATGGATTAGTTAAACTGGCAGATTTTGGGCTTGCAAAAGAGATGTCAATTTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATTTACCTTACGCTCCTATTCAGAAGAGTGTAGGTGCTTTACCATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCACCTCTTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACGGTCTTGCAAGTTCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGAGCGTGTAAATTTTCTGATAGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4323#0 TTTGAGTCAGGCAAGATCTAGCAAGGGAACTGTTTACTGGATGGCCCCTGAGGTTGCTAA 60
consensus_4323#1 ------------------------------------------------------------
consensus_4323#2 ------------------------------------------------------------
consensus_4323#0 GGCTAAGCCTCATGGACCTCCAGCAGATATATGGAGTCTTGGCTGCACAGTTTTAGAAAT 120
consensus_4323#1 ------------------------------------------------------------
consensus_4323#2 ------------------------------------------------------------
consensus_4323#0 GCTGACTGGCAAAGTTCCATACCCTGATATGGAATGGACGCATGCTTTGCTTAAAATTGG 180
consensus_4323#1 --------------------------------------------------TTAAAATTGG 10
consensus_4323#2 -------------------------------------------------------ATTG- 4
****
consensus_4323#0 TAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAAT 240
consensus_4323#1 TAGAGGAATACCACCAGAAATTCCAGCTACACTGTCAGAAGATGCTCGTGATTTCATAAT 70
consensus_4323#2 TCCAACTTGAGCATGAGATCTCTCTGTTGAGTCGTTTGGAG-----CATGAAAACATTGT 59
* * * ** *** * * * * ** * ** * *** *** *
consensus_4323#0 TAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCC 300
consensus_4323#1 GAAGTGTGTAAAAGTAAATCCAAATGATCGGCCATCTGCTGCTCAGCTGTTGGACCATCC 130
consensus_4323#2 TCAGTATTTTGGAACAGACAAGGAAGATGGAAAACTGTATATTTTCCT--TGAACTAGTA 117
*** * * * * * * *** * * * * ** ** ** *
consensus_4323#0 ATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAAC 360
consensus_4323#1 ATTTGTCCAGAGATCACTGCAACATAAAGGCGCCTAATCACTCTTGTGTTGCTAACAAAC 190
consensus_4323#2 ACT----CAAGGCTCTTTGGCAGCTCTATATCAAAAATACCGTTTACAGGACTCACAAGT 173
* * ** * ** ** * * * *** * ** ** ****
consensus_4323#0 TTGCTTGTACATAAGCTG-------------------------GAAAGCTGTTGAT-GCT 394
consensus_4323#1 TTGCTTGTACATAAGCTGATTTTAATTTTACCTGTGGAAACAGGAAAGCTGTTGAT-GCT 249
consensus_4323#2 CTCAGCGTACACAAGGC-----------------------------AGATTTTGATAGGT 204
* ***** *** ** * ***** * *
consensus_4323#0 GAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTAC 454
consensus_4323#1 GAGGATGATCCCAAATCCCTTGCCATGATACAGCGGTAGTTTGTAGGAAGTCGAGCTTAC 309
consensus_4323#2 TTGAACTATCTACACCAGCGGAACGTGTTACACAGA----------GATATTAAATGTGC 254
* * *** * * * ** **** * ** * * * *
consensus_4323#0 AGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAG 514
consensus_4323#1 AGCATGTGCAAGCTATATTCAACTGAAGATACCTTTCAGGCTGCTGGATCATGTGAACAG 369
consensus_4323#2 AA-ATATCCTAG-TGGATTCAAATGGA----TTAGTTAAACTGGCAGATTTTGGGCTTGC 308
* ** * * ** * ****** ** * * * *** *** ** *
consensus_4323#0 AAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTT 574
consensus_4323#1 AAGATACCTTGTCAGGTGTTTACTCCGTGCCTTCACAACCATCAGGGTGAACAGTTGGTT 429
consensus_4323#2 AAAAGAGAT-GTCAATT--TTGAGTCAGGCA---AGATCTAGCAAGG-GAACTGTTTACT 361
** * * * **** * ** * ** * * * * ** ** **** *** *
consensus_4323#0 GTCCAAAGTTTTTAGTGCTGATTGT-CAGGGATTATGAGTTCCAGTGCGAACCATCGAAC 633
consensus_4323#1 GTCCAAAGTTTTTAGTGCTGATTGT-CAGGGATTATGAGTTCCAGTGCGAACCATCGAAC 488
consensus_4323#2 GG--ATGGCCCCTGAGGTTAGTCTCACAGTTATGCTTTGGTCCTTTTTGTACAACCCATT 419
* * * * * * * *** ** * * *** * * ** * * *
consensus_4323#0 TACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTC 693
consensus_4323#1 TACGTTTCATGACTTGGATAAAAACTGGGAAAGGTTCAAAAGGAGGATTAGTGGTATCTC 548
consensus_4323#2 TACCTTACGCTCCT-------------------ATTCAGAAG-AGTGTAGGTGCTTTACC 459
*** ** * ** **** *** ** * *** * * *
consensus_4323#0 GCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGACGTAGAAAGCTCAGTGCTCACGGCAC 753
consensus_4323#1 GCCTAGTGGCCTATGGAAGCAGCCAAGCAGGGGATGTAGAAAGCTCAGTGCTCACGGCAC 608
consensus_4323#2 ATTTTATGTTTTAAGCATATTTCTATGCCTGATCTATTATGTTCATATTGTTCAC--CTC 517
* ** ** * * * * ** * * * * ** **** * *
consensus_4323#0 AGTTAACTTTTCTGACCGCGTTTCTGTACA-----GCGTTTTTGTACCTGTAAAGTGGCT 808
consensus_4323#1 AGTTAACTTTTCTGACCGCGTTTCTGTACA-----GCGTTTTTGTACCTGTAAAGTGGCT 663
consensus_4323#2 TTTATACTTGTAAGATGTTGCATGGACACATAATTGTATCTCTGTGGTCAAAAAGTCACG 577
* **** * ** * * *** * * * *** ***** *
consensus_4323#0 TCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGT 868
consensus_4323#1 TCCTTGTGTATGTCATTGACTGTTGACGAGAAAATCCAATTTGTTTTATAGCCATACCGT 723
consensus_4323#2 GTCTTGCAAGT-TCAAGCAATATTTTGCATAAAGTGGTATGTGTCTCCATATTGTACCGA 636
**** * *** * * ** * *** * ** *** * *****
consensus_4323#0 G-----AAATTGTCCAGAAAAATCAGTGT------------------------------- 892
consensus_4323#1 G-----AAATTGTCCAGAAAAATCAGTGTGGTTTGCGATAATTCAATTCATGTTGGACTT 778
consensus_4323#2 GCGTGTAAATTTTCTGATAGCAT------------------------------------- 659
* ***** ** * **
consensus_4323#0 ---
consensus_4323#1 CAA 781
consensus_4323#2 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||