These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1594 fasta sequence [AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC-TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT] [+] EMBL AK102353 [AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT] [+] EMBL AU101572 [ GTTCATTTCACTCCTCAAGTAAACCAAGGACTACCACCTGCAGTTCAAACAAATACATCTACTT TGTGCCTCTTTTGGGTGGANTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCCTTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTA ] consensusID : consensus_4329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA] [+] EMBL AU101573 [TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4329#0 AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAA 60 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 ATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGG 120 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCC 180 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 AAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGG 240 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 TCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGC 300 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACT 360 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACT 420 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAA 480 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATT 540 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 AACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGT 600 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCAT 660 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAA 720 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTT 780 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 AGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAA 840 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GCAAACACATCTACCCATTTGCCTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTT 900 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 ACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCAT 960 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAA 1020 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGA 1080 consensus_4329#1 ------------------------------------------------------------ consensus_4329#0 GTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 1140 consensus_4329#1 --------------TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 46 ********************************************** consensus_4329#0 GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT- 1199 consensus_4329#1 GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTT 106 *********************************************************** consensus_4329#0 GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCA 1259 consensus_4329#1 GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCA 166 *********************************************** ************ consensus_4329#0 AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 1319 consensus_4329#1 AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 226 ************************************************************ consensus_4329#0 GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 1379 consensus_4329#1 GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 286 ************************************************************ consensus_4329#0 TAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 1439 consensus_4329#1 TAGCAGTGTGAGATTAAGTGCC-TGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 345 ********************** ************************************* consensus_4329#0 ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 1499 consensus_4329#1 ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 405 ************************************************************ consensus_4329#0 GATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTG 1559 consensus_4329#1 GATATTATGGCCNTGNNNNN-TNGGAAAAAAAAAAAAAAAAA------------------ 446 ************ * * ***** * ** consensus_4329#0 CATACAAAGGTCACTGGCTTCTTCAATATACAATT 1594 consensus_4329#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||