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Oryza sativa
cluster # 4329 cluster # 4329       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4329#0 length = 1594 sequences # 2  
consensus_4329#1 length = 446 sequences # 1  

consensusID : consensus_4329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1594
fasta sequence
                              [AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC-TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT]

[+] EMBL AK102353             [AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAAATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGGGCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCCAAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGGTCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGCGTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACTGACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACTGATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAAGTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATTAACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGTGTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCATGTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAAGGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCC TTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGCATACAAAGGTCACTGGCTTCTTCAATATACAATT]
[+] EMBL AU101572             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTCATTTCACTCCTCAAGTAAACCAAGGACTACCACCTGCAGTTCAAACAAATACATCTACTT TGTGCCTCTTTTGGGTGGANTTAGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAAGCAAACACATCTACCCATTTGCCTTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTTACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCATGTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAAGGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGAGTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_4329#0 AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAA ATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGG GCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCC AAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGG TCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGC GTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACT GACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACT GATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAA GTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATT AACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGT GTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCAT GTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAA GGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTT AGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAA GCAAACACATCTACCCATTTGCCTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTT ACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCAT GTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAA GGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGA GTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTG CTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCAA ACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATG ACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTAT AGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAA CTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGG ATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTGC ATACAAAGGTCACTGGCTTCTTCAATATACAATT



consensusID : consensus_4329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence
                              [TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA]

[+] EMBL AU101573             [TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGATTAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTGNNNNNTNGGAAAAAAAAAAAAAAAAA]


>consensus_4329#1 TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGTGGACTACAGCATGA CCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTTGCTCTCGAACATGG AGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCAAACATTATGGGGGT TGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGATGACAATCATGTCAA GTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTATAGCAGTGTGAGAT TAAGTGCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTAACTCATATAGGGTGT GACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGGGATATTATGGCCNTG NNNNNTNGGAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4329#0      AACAAACTCCGCCTCGTCTCGTCTCCTCCGAAACCGCCGCGCTCCGACGCCGCCGGCGAA 60
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      ATGGCCGCGGCCGCGTCCTACTTCTCCGGCACGGCGCTCATGCCATCGCAGCGCAGCGGG 120
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GCCCCCGCGCCGGAGTACTCCGCCGCCGGCACCGGCGCCGCCGCCGCTCCTTCCCCTTCC 180
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      AAGCCGCGCGACCCCCGCTTCTCCGGATGCGTCCCCGCCACCGTGCTCCACATTTCCCGG 240
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      TCCTTCGCCGCCGCGCTCGCCGCGGACGGTGGGGGCGACCCCGTCTTCTCCATCGACGGC 300
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTCGAGACCACCAACGTTAGGGTTTTGGGGAGGGTGGTGAGCGTGGTGAGCAGGGATACT 360
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GACGTGTGCTTCACTCTCGATGACAGCACCGGGAAGATCCCACTCGTTCGGTGGATCACT 420
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GATCAGTCGGATACTCGAGACACGTCTTACATTCAGGAGGGAGTGTATGTGAAGGTTCAA 480
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTGAACCTCATGGGATTTCAAGCTAAGAAGCAGGGTCTTGCTCGATCTATCAGGCCTATT 540
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      AACAATTTCAACGAAGTGGTGCTACATTTCATTGAGTGTATGCATGTGCATTTGGAAAGT 600
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTTCAATCGAAGATGCAAAGGCAACTCCCTCCTTCAGTCCAAACCAATGAATACACTCAT 660
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTGCCCTCATCTGGTGGAGTGAGGGATTACCAAGTTCATTTCACTCCTCAAGTAAACCAA 720
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GGACTACCCCCTGCAGTTCAAACAAATACATCTACTTATGTGCCTCTTTTGGGTGGAGTT 780
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      AGAGATCATCAAGCTCATTTTGCTCAAGTAAACCAAGGGCAGTTTTCTCCGGCAGTTCAA 840
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GCAAACACATCTACCCATTTGCCTTTTTCTGGTGGAGTTGGAGAACATCAAATTCATTTT 900
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      ACTCCTAAAGTAAACCAAGGGCAATTTCCTCCATCAGTTCAAACAAACACATCTGCTCAT 960
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTGCCTTATTCTGGTGGATTTAGAGAACATCAAGTTCATTTTACACCTCCTGTAAACCAA 1020
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GGGCAATTTCCTCCAGCAGTTCAAACAAACCTGTATAATCATGCGGCTTCTTCTGGTGGA 1080
consensus_4329#1      ------------------------------------------------------------
                                                                                  

consensus_4329#0      GTGAGAGAACAAGTTCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 1140
consensus_4329#1      --------------TCATCTTACTCAAGCAAACCAATTTTCAGCTTACTCAAGCACTGGT 46
                                    **********************************************

consensus_4329#0      GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACT- 1199
consensus_4329#1      GGACTACAGCATGACCCACAAAGAATGGTTTTGGAAGCTCTGCAGCAACCAGATATACTT 106
                      *********************************************************** 

consensus_4329#0      GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGAATGCCCAAAGCA 1259
consensus_4329#1      GCTCTCGAACATGGAGCACACGTTGATGAATTGGTTAGAAGAACTGGNATGCCCAAAGCA 166
                      *********************************************** ************

consensus_4329#0      AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 1319
consensus_4329#1      AACATTATGGGGGTTGTCAAGCATCTGGCTGCAGCAGGCTTCGTCTATTGGACCATTGAT 226
                      ************************************************************

consensus_4329#0      GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 1379
consensus_4329#1      GACAATCATGTCAAGTCTATGTGTAATGGTTGATCAATGCAATCATCCTCAAGACTAGTA 286
                      ************************************************************

consensus_4329#0      TAGCAGTGTGAGATTAAGTGCCCTGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 1439
consensus_4329#1      TAGCAGTGTGAGATTAAGTGCC-TGCGGATACTAAAACTTCGTGGCACATGCTGTAAGTA 345
                      ********************** *************************************

consensus_4329#0      ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 1499
consensus_4329#1      ACTCATATAGGGTGTGACTCAGTCAGTCTTTCCTTTCAATAATCAAGTAGATCAAGTAGG 405
                      ************************************************************

consensus_4329#0      GATATTATGGCCCTTTTGCACTCGGAAACTGTGATTGCTGAATGGATCTGTTTATTACTG 1559
consensus_4329#1      GATATTATGGCCNTGNNNNN-TNGGAAAAAAAAAAAAAAAAA------------------ 446
                      ************ *       * *****     *      **                  

consensus_4329#0      CATACAAAGGTCACTGGCTTCTTCAATATACAATT 1594
consensus_4329#1      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)