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Oryza sativa
cluster # 4333 cluster # 4333       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4333#0 length = 721 sequences # 1  
consensus_4333#1 length = 586 sequences # 1  
consensus_4333#2 length = 585 sequences # 1  

consensusID : consensus_4333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence
                              [CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG]

[+] EMBL AF074741             [CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG]


>consensus_4333#0 CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATC GCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAG CAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTT GATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNC CCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCAC TTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGG ANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGC CTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATC AAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAG TCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCC GAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTT CACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGC G



consensusID : consensus_4333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC]

[+] EMBL CB669152             [CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC]


>consensus_4333#1 CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAA CCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACG ACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATT GATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCA TGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAA CAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCC TACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACA AACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCA TGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATA TCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC



consensusID : consensus_4333#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 585
fasta sequence
                              [GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC]

[+] EMBL CB647659             [GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC]


>consensus_4333#2 GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCA CTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGG GCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCA ACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCG CCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTG CGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGT ACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAA TCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACAC CGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTAT GGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4333#0      ------------------------------------------------------------
consensus_4333#2      GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCA 60
consensus_4333#1      ------------CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCA 48
                                                                                  

consensus_4333#0      -------------------------------------CACGAGCTCACCGGAAAGTCCGG 23
consensus_4333#2      CTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGG 120
consensus_4333#1      CTTGTTATAAA-ACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCA 107
                                                               *       * ****  *  

consensus_4333#0      GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 82
consensus_4333#2      GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 179
consensus_4333#1      AACACGCATG-ACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTAC 166
                        *** *           * **  ***   *** ***  *  * * * ** *  ***  *

consensus_4333#0      AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACC 142
consensus_4333#2      AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACC 239
consensus_4333#1      ATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCA-TCATATTACAG--CGTATC 223
                      * * *  *  *   *  **        * *     *  **  ***   ** *  *  * *

consensus_4333#0      GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTN 202
consensus_4333#2      GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTT 299
consensus_4333#1      AGAGTTACAATGACTCA--TGGCCGGTCGC-CGCCGGCAGTTGTTCCCTCTCGCTATGCT 280
                         *    **    **      *** **     ***    ***    *   * *      

consensus_4333#0      GNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGG-AGCACCTCCCTC 261
consensus_4333#2      GCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGG-AGCACCTCCCTC 358
consensus_4333#1      AAGTTGCCATGCGG----ATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGAT 336
                         *     *  *     * *   *         *  *     ***  ** ****     

consensus_4333#0      GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 321
consensus_4333#2      GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 418
consensus_4333#1      ATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTC----TAAGTCCTAAACTGT 392
                       **   * **      ***    *     **   ** ***     ***  **    * * 

consensus_4333#0      AATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAAC 381
consensus_4333#2      AATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGAC 478
consensus_4333#1      AACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGAT 452
                      **     *  * *   * *  **  * **** * *   **     * * ** * **  * 

consensus_4333#0      ACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTG-A 440
consensus_4333#2      ACCGAGGCACGATATT-GATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTG-A 536
consensus_4333#1      CATGATGGA-GAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCA 511
                         ** * * ** **   ** * * **      *    *   **          **** *

consensus_4333#0      TTATGG-GCGCTCCTCCCGATCCAGCATATTAC-AGCGTATCA--AANTTACAACNACTT 496
consensus_4333#2      TTATGG-GCGCTCCTCCCGATCCAGCATATTACCAGCGTATCA--AAGTTAC-------- 585
consensus_4333#1      ATACATTATGCAGTATGCAAAACTGCATATCAGGAG-ATATCAGGAAACTACGCGATGAT 570
                       **      **      * *  * ****** *  **  *****  **  ***        

consensus_4333#0      ACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACA 556
consensus_4333#2      ------------------------------------------------------------
consensus_4333#1      AGGTAAGCAACTCGAC-------------------------------------------- 586
                                                                                  

consensus_4333#0      ACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTC 616
consensus_4333#2      ------------------------------------------------------------
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      CTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAA 676
consensus_4333#2      ------------------------------------------------------------
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      ACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG 721
consensus_4333#2      ---------------------------------------------
consensus_4333#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)