These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4333#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG] [+] EMBL AF074741 [CACGAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTNGNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAACACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACAGCGTATCAAANTTACAACNACTTACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACAACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTCCTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAAACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG] consensusID : consensus_4333#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC] [+] EMBL CB669152 [CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCAAACACGCATGACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTACATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCATCATATTACAGCGTATCAGAGTTACAATGACTCATGGCCGGTCGCCGCCGGCAGTTGTTCCCTCTCGCTATGCTAAGTTGCCATGCGGATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGATATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTCTAAGTCCTAAACTGTAACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGATCATGATGGAGAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCAATACATTATGCAGTATGCAAAACTGCATATCAGGAGATATCAGGAAACTACGCGATGATAGGTAAGCAACTCGAC] consensusID : consensus_4333#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC] [+] EMBL CB647659 [GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCACTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGGGCCACCCGCCCGAAGTGTCCGACCCACCGATTGGATCGCCAATTGCTTCCGCCGCCATCAACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTTGCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGGAGCACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGAAATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGACACCGAGGCACGATATTGATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTGATTATGGGCGCTCCTCCCGATCCAGCATATTACCAGCGTATCAAAGTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4333#0 ------------------------------------------------------------ consensus_4333#2 GGCCACCCCGCTCATAGTGTTCGATCCACCGACCGACAACGCCAATCGCCTCTAGCTTCA 60 consensus_4333#1 ------------CACCTCCCTCGTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCA 48 consensus_4333#0 -------------------------------------CACGAGCTCACCGGAAAGTCCGG 23 consensus_4333#2 CTCAACCCGAGCATGGGGCCTCACGTCTCCCTGTTGAGAGAAGCTCACCGGAAAGTCCGG 120 consensus_4333#1 CTTGTTATAAA-ACCGGCCTCTAAATCACATCGGAAACCAAACGCGGAAGAAAAGATCCA 107 * * **** * consensus_4333#0 GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 82 consensus_4333#2 GCCACCCGCCCGAAGTGTCCGACCCACCG-ATTGGATCGCCAATTGCTTCCGCCGCCATC 179 consensus_4333#1 AACACGCATG-ACGACACCAGATGCACGATATTTGATAACGGAGTTCATCTGAGGCCTAC 166 *** * * ** *** *** *** * * * * ** * *** * consensus_4333#0 AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGTTCAGACC 142 consensus_4333#2 AACCCGAGCACCACGTCTAGTCATCTCCTTGTTGAAAGCAGCCATCGAACGGCTCAGACC 239 consensus_4333#1 ATCTCCGGGGCATTGATTACGGGCGCTCCTCCCCGATCCA-TCATATTACAG--CGTATC 223 * * * * * * ** * * * ** *** ** * * * * consensus_4333#0 GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCCGCCGNGCNCCNCCTN 202 consensus_4333#2 GCCGCCTGAAGTGTTCGATCCACCGATCAAATTCCGTTGATTGCTGTCGTGCTCCACCTT 299 consensus_4333#1 AGAGTTACAATGACTCA--TGGCCGGTCGC-CGCCGGCAGTTGTTCCCTCTCGCTATGCT 280 * ** ** *** ** *** *** * * * consensus_4333#0 GNTTCCNNTTCNGNCCCTAAANNCCCNNTTTNTNCTNCCCACNATGG-AGCACCTCCCTC 261 consensus_4333#2 GCGTCCATGTTCGGGGCTAGACACCCTGCGTAGTCTTCGCACCATGG-AGCACCTCCCTC 358 consensus_4333#1 AAGTTGCCATGCGG----ATACAACAGGCACACCCCTCTATTTATGACAGAACCTAAGAT 336 * * * * * * * * *** ** **** consensus_4333#0 GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 321 consensus_4333#2 GTACCTCTACCATGGATCTCCCGCAGGCTCTGATACCACTTGTTATAAAACCGGCCCCGA 418 consensus_4333#1 ATAGTCCGACTCATACTCTAGTCCTACACCTAGAACAACTC----TAAGTCCTAAACTGT 392 ** * ** *** * ** ** *** *** ** * * consensus_4333#0 AATCACATCGGAAACCAAACGCGGAAAAAACGCCATAGGANATCCAAACATGATTACAAC 381 consensus_4333#2 AATCACATCGGAAACCAAACGCGGAACAAACGCCATAGGAGATCCAAACATGATTACGAC 478 consensus_4333#1 AACTGACTACGTACATATATTCGACACAAACTCTAACAGAGGGAGAGAAATCACTAGGAT 452 ** * * * * * ** * **** * * ** * * ** * ** * consensus_4333#0 ACCGAGGCACGATATTTGATAACGGAGTTCAGCCNAAGCCTACATCTCCGGGGCACTG-A 440 consensus_4333#2 ACCGAGGCACGATATT-GATAACGGAGTTCAGCCGAAGCCTACATCTCCGGGGCACTG-A 536 consensus_4333#1 CATGATGGA-GAAATCAAATCAAGTAGCATGAACTGCACAACCAAACAAAATAAACTGCA 511 ** * * ** ** ** * * ** * * ** **** * consensus_4333#0 TTATGG-GCGCTCCTCCCGATCCAGCATATTAC-AGCGTATCA--AANTTACAACNACTT 496 consensus_4333#2 TTATGG-GCGCTCCTCCCGATCCAGCATATTACCAGCGTATCA--AAGTTAC-------- 585 consensus_4333#1 ATACATTATGCAGTATGCAAAACTGCATATCAGGAG-ATATCAGGAAACTACGCGATGAT 570 ** ** * * * ****** * ** ***** ** *** consensus_4333#0 ACGGCCGGTCACTGCCGGNAGCCGCTCCCTCTCGCTATGCTAAGTCGCCATGCAGTTACA 556 consensus_4333#2 ------------------------------------------------------------ consensus_4333#1 AGGTAAGCAACTCGAC-------------------------------------------- 586 consensus_4333#0 ACAGGCACACCCCTCTATTTATGAAAAATCCTAGGATANAGTCCGAATCATACTCTAGTC 616 consensus_4333#2 ------------------------------------------------------------ consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 CTACACCTATTACAACTCCAATCCTATACTGTTACCGACTACTTCACATATTCCACACAA 676 consensus_4333#2 ------------------------------------------------------------ consensus_4333#1 ------------------------------------------------------------ consensus_4333#0 ACTCTAACAGTATTTTACTTAAANGAAATGTTGAAATTATTTGCG 721 consensus_4333#2 --------------------------------------------- consensus_4333#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||