Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4337 cluster # 4337       Sequences # 3       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4337#0 length = 932 sequences # 3  
consensusID : consensus_4337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 932
fasta sequence 
                              [ACTACCAGTGGTCTTTCCCCGTGAAGAGGAGGAAGGTGAGGTCGCCGGGCGCCCACCATTGCCGTCGCGTGGCGAGGCATGAAGATCCTAGTGGCGGTGAAGCGGGTGGTGGACTACGCCGTCAAGGTGCGGGTGAGGCCCGACCGGACGGGCGTCGAGACGGCGAGCGTCAAGATGTCCATGAACCCATTCTGCGAGATCGCCGTCGAGGAGGCGCTCCGCCTCCGCGAGTCCGGCGCCGCCACCGAGGTCGTCGCCGCCACCGTCGGCCCCTCCCAGTCCGCCGACACCCTCCGCACCGCGCTCGCCATGGGCGCCGACCGCGCCGTCCACGTCCTCCACGACCCCGACCCCTCCCGCCCCCTCCTCCCCCTCGCCGTCGCCAAGATCCTCCGCGCCCTCGCGCTCCAGGAGAACCCCGGCCTCGTCATCCTCGGCAAGCAGGCAATTGATGATGATTGCAACCAAACAGGACAAATGCTAGCTGGGTTGCTTAATTGGCCACAAGGAACCTTTGCCTCAAAGGTTATATTGAACAAGGAAAAGGCTACTGTGGAGAGAGAGGTCGATGGCGGAATCGAGACCATTAGCTTGGATTTGCCTGCAGTTATCACCACGGATTTGAGACTGAACCAACCAAGGTATGCAACATTGCCAAACATAATGAAGGCAAAATCAAAAGTCATCAAGAAAGTCACCCCCGAAGATCTGGATGTAGATATCAGATCAGACATGGAAGTAGTTGAGGTCACTGAACCACCTAAGAGAAAAGCCGGTGTCATTCTTTCATCCGTCGATGAGCTCGTTGACAGGTTGAAAAATGAAGCCCGTGTTTTATAACATTCTTTGTACTAATGCTCATGAGCTAAGGAATGTGGCATATGCAAATAAAGTGTAGTTATAAATGGTCATCGTATGCAAATAAAAATGTG]

[+] EMBL AK063110             [ACTACCAGTGGTCTTTCCCCGTGAAGAGGAGGAAGGTGAGGTCGCCGGGCGCCCACCATTGCCGTCGCGTGGCGAGGCATGAAGATCCTAGTGGCGGTGAAGCGGGTGGTGGACTACGCCGTCAAGGTGCGGGTGAGGCCCGACCGGACGGGCGTCGAGACGGCGAGCGTCAAGATGTCCATGAACCCATTCTGCGAGATCGCCGTCGAGGAGGCGCTCCGCCTCCGCGAGTCCGGCGCCGCCACCGAGGTCGTCGCCGCCACCGTCGGCCCCTCCCAGTCCGCCGACACCCTCCGCACCGCGCTCGCCATGGGCGCCGACCGCGCCGTCCACGTCCTCCACGACCCCGACCCCTCCCGCCCCCTCCTCCCCCTCGCCGTCGCCAAGATCCTCCGCGCCCTCGCGCTCCAGGAGAACCCCGGCCTCGTCATCCTCGGCAAGCAGGCAATTGATGATGATTGCAACCAAACAGGACAAATGCTAGCTGGGTTGCTTAATTGGCCACAAGGAACCTTTGCCTCAAAGGTTATATTGAACAAGGAAAAGGCTACTGTGGAGAGAGAGGTCGATGGCGGAATCGAGACCATTAGCTTGGATTTGCCTGCAGTTATCACCACGGATTTGAGACTGAACCAACCAAGGTATGCAACATTGCCAAACATAATGAAGGCAAAATCAAAAGTCATCAAGAAAGTCACCCCCGAAGATCTGGATGTAGATATCAGATCAGACATGGAAGTAGTTGAGGTCACTGAACCACCTAAGAGAAAAGCCGGTGTCATTCTTTCATCCGTCGATGAGCTCGTTGACAGGTTGAAAAATGAAGCCCGTGTTTTATAACATTCTTTGTACTAATGCTCATGAGCTAAGGAATGTGGCATATGCAAATAAAGTGTAGTTATAAATGGTCATCGTATGCAAATAAAAATGTG]
[+] EMBL AU222983             [                                           GCCGGGCGCCCACCATTGCCGTCGCGTGGCGAGGCATGAAGATCCTAGTGGCGGTGAAGCGGGTGGTGGACTACGCCGTCAAGGTGCGGGTGAGGCCCGACCGGACGGGCGTCGAGACGGCGAGCGTCAAGATGTCCATGAACCCATTCTGCGAGATCGCCGTCGAGGAGGCGCTCCGCCTCCGCGAGTCCGGCGCCGCCACCGAGGTCGTCGCCGCCACCGTCGGCCCCTCCCAGTCCGCCGACACCCTCCGCACCGCGCTCGCCATGGGCGCCGACCGCGCCGTCCACGTCCTCCACGACCCCGACCCCTCCCGCCCCCTCCTCCCCCTCGCCGTCGCCAAGATCCTCCGCGCCCTCGCGCTCCAGGAGAACCCCGGCCTCGTCATCCTCGGCAAGCAGGCAATTGATGATGATTGCAACCAAACAGGACAAATGCTANCTGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSS3817A             [                                           gnCGGGCGCCCACCATTGCCGTCGCGTGGCGAGGCATGAAGATCCTAGTGGCGGTGAAGCGGGTGGTGGACTACGCCGTCAAGGTGNGGGTGAGGCCCGACCGGACGGGCGTCGAGACGTCGAGCGTCAAGATGTCCATGAACCCATTCTGCGAGATCGNCGTCGAGGAGGCGNTCCG CTCCGNGAGTCCNNCGNCG CACCGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]




>consensus_4337#0
ACTACCAGTGGTCTTTCCCCGTGAAGAGGAGGAAGGTGAGGTCGCCGGGCGCCCACCATT
GCCGTCGCGTGGCGAGGCATGAAGATCCTAGTGGCGGTGAAGCGGGTGGTGGACTACGCC
GTCAAGGTGCGGGTGAGGCCCGACCGGACGGGCGTCGAGACGGCGAGCGTCAAGATGTCC
ATGAACCCATTCTGCGAGATCGCCGTCGAGGAGGCGCTCCGCCTCCGCGAGTCCGGCGCC
GCCACCGAGGTCGTCGCCGCCACCGTCGGCCCCTCCCAGTCCGCCGACACCCTCCGCACC
GCGCTCGCCATGGGCGCCGACCGCGCCGTCCACGTCCTCCACGACCCCGACCCCTCCCGC
CCCCTCCTCCCCCTCGCCGTCGCCAAGATCCTCCGCGCCCTCGCGCTCCAGGAGAACCCC
GGCCTCGTCATCCTCGGCAAGCAGGCAATTGATGATGATTGCAACCAAACAGGACAAATG
CTAGCTGGGTTGCTTAATTGGCCACAAGGAACCTTTGCCTCAAAGGTTATATTGAACAAG
GAAAAGGCTACTGTGGAGAGAGAGGTCGATGGCGGAATCGAGACCATTAGCTTGGATTTG
CCTGCAGTTATCACCACGGATTTGAGACTGAACCAACCAAGGTATGCAACATTGCCAAAC
ATAATGAAGGCAAAATCAAAAGTCATCAAGAAAGTCACCCCCGAAGATCTGGATGTAGAT
ATCAGATCAGACATGGAAGTAGTTGAGGTCACTGAACCACCTAAGAGAAAAGCCGGTGTC
ATTCTTTCATCCGTCGATGAGCTCGTTGACAGGTTGAAAAATGAAGCCCGTGTTTTATAA
CATTCTTTGTACTAATGCTCATGAGCTAAGGAATGTGGCATATGCAAATAAAGTGTAGTT
ATAAATGGTCATCGTATGCAAATAAAAATGTG

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)