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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1989 fasta sequence
[GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCTCATGCTCAGCACTGAATGCGCCTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGGCTGACAAGAATCTCTGTGCAATATGTCTGGAGCCCCTCAGCACCGGCAGCGTTGATATTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCCTATGCATCGCCTCCAACATTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAGTGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGACCCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCCATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCATGTGGATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGCTCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAGCTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCTCTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGGGCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAATTGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCGAATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGGTGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCACCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGGGGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGGGGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGGTGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGAGCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCATACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGTCGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGGTCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGATCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAAGAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACAGCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGTGAGTTAT]
[+] EMBL AK064311 [GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCTCATGCTCAGCACTGAATGCGCCTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGGCTGACAAGAATCTCTGTGCAATATGTCTGGAGCCCCTCAGCACCGGCAGCGTTGATATTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCCTATGCATCGCCTCCAACATTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAGTGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGACCCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCCATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCATGTGGATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGCTCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAGCTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCTCTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGGGCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAATTGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCGAATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGGTGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCACCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGGGGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGGGGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGGTGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGAGCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCATACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGTCGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGGTCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGATCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAAGAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACAGCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGT ]
[+] EMBL CA763858 [ TTGGTTCTTTA TTTTTTTTCCTCTCTTAACATTCCTGCAAGCATCTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCATTTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCAATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGCATTGGAGTGAGTTAT]
consensusID : consensus_4342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCTCTCTACATTTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCTTAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTTTGGGGTGTTTCTTCCCAGTTGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTTTTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAATGTATCGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGACTGGGCATTTTTTGTCTCTCTACTACCATCTGCAGGTGATTTTCAAGTTCCTTTCCTTCTAGCAGTAAAACTCAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCACATTGCAACCCTGCTTGATTCTCTCCTTCCATTTCAGATGTTGTTT]
[+] EMBL AK062446 [TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGGAGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGCGCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCACGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCTCTCTACATTTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCTTAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTTTGGGGTGTTTCTTCCCAGTTGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTTTTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAATGTATCGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGACTGGGCATTTTTTGTCTCTCTACTACCATCTGCAGGTGATTTTCAAGTTCCTTTCCTTCTAGCAGTAAAACTCAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCACATTGCAACCCTGCTTGATTCTCTCCTTCCATTTCAGATGTTGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4342#0 GAGGAAGAGCTAGCTATCCTATGGTGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGG 60
consensus_4342#1 ------------------------TGCTAGCTGTAGCTAGCTCCGACGACTGAGGTGAGG 36
************************************
consensus_4342#0 AGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGC 120
consensus_4342#1 AGACGCAATGGCGGGGAGATGCGCCGGCGGCGGCGACGGCGGCGGCGAGGGCATGCTGGC 96
************************************************************
consensus_4342#0 GCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCA 180
consensus_4342#1 GCGGCTGCGGAGGGCGGCAGCCAGGCGGATCGGGCTCTCCTGCGCCTCCTTCTTCTCCCA 156
************************************************************
consensus_4342#0 CGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCATCT-CATGCTCAGCACTGAATGCGC 239
consensus_4342#1 CGCCGCCACCTCCCCTTCCCCGCCTCCCAAGACCGTATGCATTCTCT-CTCTACAT---- 211
********************************** * * *** *** * ** **
consensus_4342#0 CTGCAGACAGCACTGATGAAGACCAGGAAAAGCTGGAGGAGCCCACTAGCACAAGAATGG 299
consensus_4342#1 -TTCATAGATTTTCTTTTCTTTTCTAACGGTTCAGATATAATTTAGCAGCAATTTGTTCT 270
* ** * * * * * * * * **** *
consensus_4342#0 CTGACAAGAATCT--CTGTGCAATATGTCTGGAGCCCCT-CAGCACCGGCAGCGTTGATA 356
consensus_4342#1 TAAGAAAGAGTCCAGCTACCCAAAATGCCTCATTTTTTTTCTGCATTT-TGGGGTGTTTC 329
**** ** ** *** *** ** * * *** * ** *
consensus_4342#0 TTGACAATGGTGACAGGCCAGCAATCTTCACATCACAATGCTCCCACTCCTTCCACTTCC 416
consensus_4342#1 TTCCCAGT--TGGTAGATGTTCAAGATACACTAAGAAGGGAAAAAAATGAGGCTGTTTTT 387
** ** * ** ** *** * *** * * * * * **
consensus_4342#0 TATGCATCGCCTCCAACA-TTCGGCACGGCAATGTTACATGTCCCATCTGCCGTGCACAG 475
consensus_4342#1 TTTTCTTTTCTGTGGTTAATTAAGTTTTGGGATTTTGTTTTCACCATCAAT-----GTAT 442
* * * * * * ** * * ** ** * ***** *
consensus_4342#0 TGGTCTCAGCTGCCGCGTGACTTGAAGGTGCCACCATTGCTGCAGAACAACCAGTCTGAC 535
consensus_4342#1 CGGTTTCTGGTTGTTCTTGGCTTTCAGTTTCTTGCTATGTTTTGGGAC--------TGGG 494
*** ** * * * ** *** ** * * * ** * * ** **
consensus_4342#0 CCAATCCTCCGCATCCTTGATGACAACATCGCGACATCTCGTTTCAACAGAAGGTCATCC 595
consensus_4342#1 C--ATTTTTTGTCTCTCTACTACCATCTGCAGGTGAT----TTTCAA------GT--TCC 540
* ** * * ** * * ** * * * ** ****** ** ***
consensus_4342#0 ATCCGTGCTGCCCGGTACAACGACGATGATCCGGTTGAGCCTTACACCTTGACCGAGCAT 655
consensus_4342#1 TTTCCTTCTAGC-AGTAAAACT-CAATGAGCTGTCACTGCCTGTCCTTTTCACCTCCCAC 598
* * * ** * *** *** * **** * * **** * ** *** **
consensus_4342#0 GTGG-ATCCATGCCTTCGCTTCGCTCTGATCCCATCCCCAGTGGCGGCTCACCATCATGC 714
consensus_4342#1 ATTGCAACCCTGCTT--GATTCTCTCC--TTCCATTTCAGATGTTGTTT----------- 643
* * * ** *** * * *** *** * **** * ** * *
consensus_4342#0 TCTCGGACATTACCCATGTGGCCGTGTGATGCCACTGCAGCAGCATTGCCAGTACAGCAG 774
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 CTCCTCCATGCTCTCACCGCCACAGATTGCTTCACCAAGTGGGCAGAGGCGCGCTTACCT 834
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 CTCCGTCAGTCTCGCGCCACAGCCAGCCATGGACCTAGTTCTGGTTGCCAGCCCTAATGG 894
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GCCACATCTCAGGCTCCTGAAGCAGGCAATGGCGCTGGCTGTCTTCTCCATGCGCGCAAT 954
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TGACCGGTTAGCCATTGTCACAAATGCCACCACTGCAACCCGCGCCTTCCCCTTGCGCCG 1014
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 AATGTCATCCCATGGAAAGCGAATGGCATTGCAGGTCATTGAACACCTCTGCTGTGTTGG 1074
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TGGTACTGATCCTGTAGGGGCATTGCAGAAGGGCCTGAAGATACTAGAGGACCGGGCGCA 1134
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 CCAGAACCCAAGCAGTTGCATTCTTCACCTGTCAGACCATCCAATCCGAAGCTGTTTCGG 1194
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GGTCGACATGAACCGTTTCAACATCCCGGTTCACCAGTTCCATGTCGGCCTCGGTTTCGG 1254
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GGTGCAGAATGGCTTTGTGATGCACGAGTTTGAGGAGCTCTTAGCGCGGTTGCTTGGCGG 1314
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TGTCATAAGCGACACCCAGCTCAGGATTGGCGAGCACGGTGGAGTGGTGAGGCTAGGTGA 1374
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GCTGAGGGGTGGCGAAGAGAGGAGGATCCCGCTTGACCTGGTGTCGGACTGCGGCTTCAT 1434
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 ACTTGTTGGCTATAGCTATCTGGAAGGTGGAAGGGAGGATCAGTTCAGGACAGGCGAAGT 1494
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 CGCTGTCGGTTTCGAAGAGAAAGGCGATAACCGGTACTGCGGGGTCAGGGATGCCGGTGG 1554
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TCTGAGTATCGGCGGTGAGAGGAGGAGCAGCTGCTGCGCCGAGAGATGGGACTACCTTGA 1614
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TCCGTTCATGGCGCGGCGATGGGCGAAGCATTTCAATGTGTATAGGGCCTGAGTTAAAAA 1674
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GAGGGGGAGCTTGGGGCTTTGAAGTGATCAGCTCAGCAAGTCTGGTTTACCAGTTTGACA 1734
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 GCATATGATTCTTGTTGGCTCTTTATTTTTTTTTTCCTCTCTTAACATTCCTGCAAGCAT 1794
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 CTCATGATCATCAGAGGAAATGTTTGCTTTTTTGGCTTTTGTTGTGGATCAGGGATCCAT 1854
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 TTGTAAGATGTCTGGTTTTGCATCAGATGTGTGCAATGTGCACAAGGCTTTCTGTTCTCA 1914
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 ATCTGTATGTGTGAATCGGACTGTGAACAAAACTCAGCACAAAGAATGAAATATGGCTGC 1974
consensus_4342#1 ------------------------------------------------------------
consensus_4342#0 ATTGGAGTGAGTTAT 1989
consensus_4342#1 ---------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||