These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1293 fasta sequence [TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTCATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAATGAAATATGCAAATTCAGATGAATCTGTGATATGAT] [+] EMBL AK108777 [TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAGGTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCATGCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACCCCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAGAAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCCGACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCGCACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGGGGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTCGCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCCGTCCTCGCCGACCACGGCGTCAAGGCCGACGCCCCCGTCTACAACGCCCTCATGAAGGCGCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGACGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGGGATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGACGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGCGCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAACACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTCAGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAATGAAATATGCAAATTCAGATGAATCTGTGATATGAT] consensusID : consensus_4351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACAATTCATTTGTTCCCTTTTTGCAGATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGTCAGGGTTTGCCTTTTTTGAGACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGTTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTTCTGAANGTCCATATGGGTCCATCTGTAGGAGACATTAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA] [+] EMBL CA764698 [GAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACAATTCATTTGTTCCCTTTTTGCAGATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGTCAGGGTTTGCCTTTTTTGAGACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGTTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTTCTGAANGTCCATATGGGTCCATCTGTAGGAGACATTAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA] consensusID : consensus_4351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [TTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGCCAGGGTTTGCCTTTTTTGGGACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGNTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTCTGAA] [+] EMBL CA763887 [TTTACAAATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACGTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAGCATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAAAGATATCCAATATTTATGAAAGCACAGCTTGATTACTTGAATGGTCTGCATCAGATGTTTATACCCTTTTGTTGGTACCGACTACTGAGCAACTTCATACTCCCTCCGTCACAAAAAAAAAAAGACAGATACATAGCCAGGGTTTGCCTTTTTTGGGACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAGCAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCTATTGGTGTCCCCCCACTTTGGTCCCTCTGGGATCAGNTTTCCTGTAAATGTCTGAATAAATCATCCAAATCTCAATTTCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 TGTCACCATTCGATTCCCAAACTCTCGCCGCCGCCGCCGCCGCCGGGGACGATGGGGAAG 60 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 GTGCCGCACGCCATGCGCGCCGCCAAGCTCCCCCTCGCCGTCCTTGCCAAGCCCACCCAT 120 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 GCTTCGGCTTCCCAGCCCCCTGCGCCGCCGAGGCCCAGCAATCCCAGGCACCGGAAAACC 180 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 CCAGCCAAGGCTTCCAAAACCCCGGCTCCGGCCACGGCCGCCGCGCCGCCGCCGGTAGAG 240 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ----------------------------TTTACAAATCCATGGTTGGTGCCGCGATGAAG 32 consensus_4351#0 AAGAGGCCGATCAAGACTGCCTCCGACCTCGCCGCAGCCATCCGCGCGGCGGCCGACGCC 300 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 CTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGCGTTGTGTCGTGCAGGGAGAGTACCG 92 consensus_4351#0 GACGTCGACGCGGCGGTCGACCTCGCGCGGTCCGCGGCCCGCACCATCCCGCTCCCGCCG 360 consensus_4351#1 --------------------------------GAGCAAGAGCTTTGCGGAGGTGACG--- 25 consensus_4351#2 GATGCATACGAGGTGTTCGACTACGGGATCGAGAGCAAGAGCTTTGCGGAGGTGACG--- 149 consensus_4351#0 CACTCCCTCTCGCTGCTCCTCCGCCGCCTCGCCCGCCACCGCTCCGTCGCCGCGGCGAGG 420 ** * *** * * * * ** consensus_4351#1 ---TTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATNATAAAGT 82 consensus_4351#2 ---TTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGCACCGGATGAAATCATAAAGT 206 consensus_4351#0 GGCCTCCTCGCGGAGCTCCACCCCTCGCCCGCCTCCCCGCCGCCACGCCCCGCGCTGCTC 480 * * ****** * ***** * * * ** * consensus_4351#1 AGGCTGCATGGC-CAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTGG-------C 134 consensus_4351#2 AGGCTGCATGGC-CAGTATCTTTGTCCCTGGTACTGCAATGGTTCATGCTAG-------C 258 consensus_4351#0 GCGCTGTCCGACGCCGTCTGCCGCCGCGGGGAGCCCCGGGAGATCGCGCAGCTCCTCCCC 540 **** * * * ** * * ** * * * ** ** * consensus_4351#1 ATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAA 194 consensus_4351#2 ATGGGAGAAAACTGAGTCATCATGTCCTGCCTTTTCCATGACCGGCAAGCTCAACAGAAA 318 consensus_4351#0 GTCCTCGCCGACCACGGCGTCAAGGCC-GACGCCCCCGTCTACAACGCCCTCATGAAGGC 599 * * ** * * *** * ** * * ** * * * **** * consensus_4351#1 AGATGTCCGCAGTTGTATGGTTTTCTGCTATCTCTATATTTTAAATACCTAGCTAGCACA 254 consensus_4351#2 AGAT-------------------------------------------------------- 322 consensus_4351#0 GCACTGCGCCGCCTCCGACCCCGCGGGTGTCCTCGGCGTCCTCCGCCGCATGAAGGACGA 659 * consensus_4351#1 ATTCATTTGTTCCCTTTTTG-CAGATCCAATATTTATGAAAGCA-CAGCTTGATTACTTG 312 consensus_4351#2 ------------------------ATCCAATATTTATGAAAGCA-CAGCTTGATTACTTG 357 consensus_4351#0 CGGCGTCGAGCCCGACCTCGTCACCTACAACACCCTCGTCTTCGGCCTCGCGCGCGCCGG 719 * *** * * * * * * * * consensus_4351#1 AATGGTCTGCAT--CAGATGTTTAT----ACCCTTTTGTTGGTACCGACTACT----GAG 362 consensus_4351#2 AATGGTCTGCAT--CAGATGTTTAT----ACCCTTTTGTTGGTACCGACTACT----GAG 407 consensus_4351#0 GATGGTCACCAAGGCAAGAACCTATCTCGACGCCATGGCCGCCGCTGGCCACTTCCCGGA 779 ****** ** ** *** ** * * * * * * * *** * consensus_4351#1 CAACTTCATACTCCCTCCGTCACAAAAAAAAA--------AAGACAGATACATAGTCAGG 414 consensus_4351#2 CAACTTCATACTCCCTCCGTCACAAAAAAAAA--------AAGACAGATACATAGCCAGG 459 consensus_4351#0 CGTCATCACATACACCTCGCTGATGAACGGGATGTGCGTCAAGGGCGACGCCATGGGAGC 839 * * *** * * * ** ** * *** ** * * ** consensus_4351#1 GTTTGCCTTTTTTGAG---ACGGAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAG 471 consensus_4351#2 GTTTGCCTTTTTTGGG---ACGAAGGGAATACTTTGGAATGCTCATTAGTCTTTATGCAG 516 consensus_4351#0 GCTTGCTCTCCTCGAGGAGATGGAGGCCAAGGGATGCGAGCCGAATGAGCGAACATACAA 899 * **** * * * * * * *** * ** * * ** ** ** ** consensus_4351#1 CAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCT 531 consensus_4351#2 CAGTGGAATCTCATGCAAAAGAAGGGATATTGTACTAGAGGAATATATTGGTCTTTTTCT 576 consensus_4351#0 CACTCTGCTCATGGGGCTCTGCAAGAACAAGAAGCTCGACAAGGCCGTCGATGTTTACAA 959 ** * ** * * * * * * ** ** * * * * *** consensus_4351#1 ATTGGTGTCC--CCCCACTTTGGTCCCTCTGGGATCAGTTT-TCCTGTAAATGTCTGAAT 588 consensus_4351#2 ATTGGTGTCC--CCCCACTTTGGTCCCTCTGGGATCAGNTT-TCCTGTAAATGTCTGAAT 633 consensus_4351#0 ATCCATGGTTGGTGCCGCGATGAAGCTTGAAGCTCCAGCTTATGCGACATTCGTCAGGGC 1019 ** ** ** * ** * * * *** ** * * * *** * consensus_4351#1 AAATCATCCAAATCTCAATTTTCTGAANGTCCATATGG-GTCCATCTGTAGGA--GACAT 645 consensus_4351#2 AAATCATCCAAATCTCAATTT-CTGAA--------------------------------- 659 consensus_4351#0 GTTGTGTCGTGCAGGGAGAATACCGGATGCATACGAGGTGTTCGACTACGGGATCGAGAG 1079 ** * * * * * consensus_4351#1 TAAGCTTTTTAGTAAACTGACTGGTGTCTACTGGGGGTAAAGCAAAAGA----------- 694 consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 CAAGAGCTTTGCGGAGGTGAC-GTTGTATACTGAGCTCGAGAACTCGCTCAAGTGGCTGC 1138 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 ACCGGATGAAATCATAAAGTAGGCTGCATGGCCAGTATCTTTGTCCCTGGTACTTGCTTC 1198 consensus_4351#1 ------------------------------------------------------------ consensus_4351#2 ------------------------------------------------------------ consensus_4351#0 AGCCTTAGTTTTTTTTTCCATGAAAAGCTAGTTGCCTGCCTTAATTTGTTGTATTACAAT 1258 consensus_4351#1 ----------------------------------- consensus_4351#2 ----------------------------------- consensus_4351#0 GAAATATGCAAATTCAGATGAATCTGTGATATGAT 1293 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||