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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 895 fasta sequence
[TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGCGGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGGGCACTCAAAG-AATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCAGTACACGGCGAGGCAATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCACTGGTTGATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCCATGGCTCATTGGATGGCACCTCACTTGTCCACGGTGGGGCAATGAACTCAGATATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTTGGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAAGTTCCCAATGCTTGGATTCCAACTCTTTTG]
[+] EMBL CF314012 [TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGCGGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGGGCACTCAAAG AATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCAGTACACGGCGAGGCAATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCAC ]
[+] EMBL AF074756 [ CGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCAC CGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGT AGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAAATTCTTTGCTGATAGTCTANAAAACATTTGTGAAGCAAAGTGCAGGCTTTTCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAATTGA GTGTGTGTGTGAGAGANAAATGAGAAGTGGAGCAGTGACCACTANCCAGTNCACGGCGAAGCAATAGGCGAAGGGCTCGGANTTTTGCCTCTGCTAAGGTCTCCACTGGTTGATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCCATGGCTCATTGGATGGCACCTCACTTGTCCACGGTGGGGCAATGAACTCAGATATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTTGGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAAGTTCCCAATGCTTGGATTCCAACTCTTTTG]
consensusID : consensus_4354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 836 fasta sequence
[CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACCATTCAACTGCTCAGAGCTCAGGGAAAAGTATTTTCATCACTCGCGGTTGGACACATATATGGCCTCTTATATGGACATCTTGCTCATGTTGCTCAGCAGCAAAAACTTGCCAAAGTTCATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAACCGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAGTAACACCATATGGGCAGGGCCAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATTACGGAGTACTATACCTACCTATCTTTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAATATATCTAGGTGGGGTTTCATC]
[+] EMBL CA766894 [CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATCCAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAGGTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTACGTTGAGTAGCATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTGCATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATGGTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTGTGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACCATTCAACTGCTCAGAGCTCAGGGAAAAGTATTTTCATCACTCGCGGTTGGACACATATATGGCCTCTTATATGGACATCTTGCTCATGTTGCTCAGCAGCAAAAACTTGCCAAAGTTCATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAACCGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAGTAACACCATATGGGCAGGGCCAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATTACGGAGTACTATACCTACCTATCTTTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAATATATCTAGGTGGGGTTTCATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4354#0 TGACTGGACTGAAGGAGTAGAAAGAACGACGCCTCCACCACGTCCTCCCGCGGCATCAGC 60
consensus_4354#1 ------------------------------------------------------------
consensus_4354#0 GGCTCTCAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATC 120
consensus_4354#1 ------CAGCGCCGCCGCCCCTGGCGTGCGAACCCTCCAATCCGCCCTCTCCCTCGGATC 54
******************************************************
consensus_4354#0 CAGCCGCGCCACCGCTCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCG 180
consensus_4354#1 CAGCCGCGCCACCGCCCGCCTCTTGCGTTGAATGGAAGCAGGAGGGAGGAGAAATCACCG 114
*************** ********************************************
consensus_4354#0 GCGGCGGCGGCGGCGGCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAG 240
consensus_4354#1 GCGGCG---------GCGGTGACGGTTGGGAGGTCCTAAGCCCTAGCGGCTAGCGCACAG 165
****** *********************************************
consensus_4354#0 GTTGACGGAGAGAAAACTACAATATGCGCGAATCTAATGGAGTTCGTTCAGATGGGATTA 300
consensus_4354#1 GTTGACGGAGAGAAAACTACAATATGCGCGAATTTAATGGAGTTCGTTCAGATGGGATTA 225
********************************* **************************
consensus_4354#0 CGTTGAGTAGCAGCATCACGTGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTG 360
consensus_4354#1 CGTTGAGTAGC---ATCACATGTTGGGACCTGTCCTCATATGCCTCCAGCAGTCCAGCTG 282
*********** ***** ****************************************
consensus_4354#0 CATGACTGTGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATG 420
consensus_4354#1 CATGACTGCGGTGAAGATGAGCATCAAGAATTGGAATAATCTGAAGAACATGGAGGGATG 342
******** ***************************************************
consensus_4354#0 GTTTTATCTGTGCGACTGGGCACTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTG 480
consensus_4354#1 GTTTTATCTGTGCGACTGTGCGCTCAAAGAATTCTTTGCTGATAGTCTAGAAAACATTTG 402
****************** ** **************************************
consensus_4354#0 TGAAGCAAAGTGCAGGCTTTGCTTCTATTGGACCCATACCTGCACTCGCAATTACAGAAA 540
consensus_4354#1 TGAAGCAAAGTGCAGGACAAACATGAAAGAAGCTAAGCACCGAGTTGAAAAGGACC--AT 460
**************** * * * * * * * * ** ** *
consensus_4354#0 TTGAGTGTGTGTGTGTGAGAGAGAAATGAGAAGGGGAGCAGTGACCACTAGCCA-GTACA 599
consensus_4354#1 TCAACTGCTCAGAGCTCAGGGAAAAGT---ATTTTCATCACTCGCGGTTGGACACATATA 517
* * ** * ** ** ** * * * ** * * * * ** ** *
consensus_4354#0 CGGCGAGGCA-ATAGGCGATGGGCTCGGAGTCTTGCCTCTGCAAGGGTCTCCACTGGTTG 658
consensus_4354#1 TGGCCTCTTATATGGACATCTTGCTCAT-GTTGCTCAGCAGCAAAAACTTGCCAAAGTTC 576
*** * ** * * **** ** * * **** * * ***
consensus_4354#0 ATCTGCCCATTGGTGTTTCCTGTCGTTCACTTTTGGTCGTTGAACTCCC--ATGGCTCAT 716
consensus_4354#1 ATCCGGGAAAGGAGTATTTTCATCACTCGGTGACATGCAAGAAATGAGTGGATATCTAAC 636
*** * * * ** ** ** * * ** ** ** *
consensus_4354#0 TGGATGGCA---------CCTCACTTGTCCACGGTGGGGCAAT--------GAACTCAGA 759
consensus_4354#1 CGAGTGATGAAAATCCATCTCCATTTCATCGTGCTGTAGTAGCAGATCGAAGAAACTGAG 696
* ** * ** ** * * ** * * ***
consensus_4354#0 TATCANCGTCTGCGAAGATTGCTGCCACTGATCTACCCACTGGTCCCCATTGTGGCGTTT 819
consensus_4354#1 TAACACCATATGGGCAGGGC-CAGACGCAGNTGCTTATCCTGGTTATTGNGGNGGCTATT 755
** ** * * ** * ** * * * * * * ***** * *** **
consensus_4354#0 -----GGATCNAACTCATCTATGAATAAAAATTGGTTTGAATGCTATCNAA-GTTCCCAA 873
consensus_4354#1 ACGGAGTACTATACCTACCTATCT-TTGNGCTTAGTTTCGACGCGCTTGATCGCTTATAA 814
* * ** * **** * ** **** * ** * * * * **
consensus_4354#0 TGCTTGGATTCCAACTCTTTTG 895
consensus_4354#1 TATATCTAGGTGGGGTTTCATC 836
* * * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||