cluster # 4356

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Oryza sativa
cluster # 4356 cluster # 4356 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4356#0 length = 835 sequences # 2

consensus_4356#1 length = 514 sequences # 1

consensusID : consensus_4356#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 835
fasta sequence

                              [TCTTTTTATTGAAGACCAAAAGAAGTTTATATATTTATTCAACATGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC]

[+] EMBL CB668938             [TCTTTTTATTGAAGACCAAAAGAAGTTTATATATTTATTCAACATGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAA                                            ]
[+] EMBL CB623311             [             GACCAAAGGAAGTTTATATATTTATTCAATAGGCTATAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC]




>consensus_4356#0
TCTTTTTATTGAAGACCAAAAGAAGTTTATATATTTATTCAACATGCTAAAAACTTGCAC
CCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAAATAT
ATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTAT
GCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCATGTGTTACAT
GCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAACCAGCA
CTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATC
TGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAG
CCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAA
CAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCACCAAA
CGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGTGGATC
AGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCTTGTTG
CAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCGCTGGA
CCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCTAATCC
ACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC

consensusID : consensus_4356#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAAGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGTTACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA]

[-] EMBL BI813511             [TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTTGCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAAGTACAGGAGCAATGAAAATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAACTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGTTACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATTGTCCCACGACATCAACCAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA]




>consensus_4356#1
TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTT
GCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAAGTACAGGAGCAATGAAAA
TATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAAC
TATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGTT
ACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATTGTCCCACGACATCAACCA
GCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATGAC
ATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGAAG
CAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTTTT
CAACAGACCACGCCTCTTTTTGAAGGTTTATCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4356#0      TCTTTT---TATTGAAGACCAAAAGAAGTTTATATATTTATTCAA-CATGCTAAAAACTT 56
consensus_4356#1      TTTTTTGGACATTGAAGACCAAAAGAAGTTTATATATTTATTCAAATAGGCTAAAAACTT 60
                      * ****    ***********************************  * ***********

consensus_4356#0      GCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAATGTACAGGAGCAATGAAA 116
consensus_4356#1      GCACCCTGATTACAAGCAATAGTTGCCATAATCTGAATACAA-GTACAGGAGCAATGAAA 119
                      ****************************************** *****************

consensus_4356#0      ATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAA 176
consensus_4356#1      ATATATCACTCTTATGGTCACTGCAAAAAAATATAGCAACTCAATCTGAAACAAGGAAAA 179
                      ************************************************************

consensus_4356#0      CTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATGCCA-TGTGT 235
consensus_4356#1      CTATGCTCTATTACAACATCACGGAGAAACCCTAGAAGCACTATCAGAATACCAGTGTGT 239
                      ************************************************** *** *****

consensus_4356#0      TACATGCCAAGCCTATAAGTGTTTATCGACAAGTTGCTCAATTTGTCCCACGACATCAAC 295
consensus_4356#1      TACATGCCAAGCCTCTAAGTGTTTATCGACAAGTTGCTCAATT-GTCCCACGACATCAAC 298
                      ************** **************************** ****************

consensus_4356#0      CAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATG 355
consensus_4356#1      CAGCACTATCGATTCTCTCGTTTATACCAACTGCCATCAATTCTCAAGGAAGAACTCATG 358
                      ************************************************************

consensus_4356#0      ACATCTGTCCATCACAGCTCCAATTGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGA 415
consensus_4356#1      ACATCTGTCCATCACAGCTCCAATGGGTCACTTGTTTCAGCTTTGCTTGCTCATGAGTGA 418
                      ************************ ***********************************

consensus_4356#0      AGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTT 475
consensus_4356#1      AGCAGCCCTGAGATTTGCATCTGGTGCTCCATAGCTCCATTTACTTCAGTGACAGTATTT 478
                      ************************************************************

consensus_4356#0      TTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAAAAACAGGGCAATCGGGCTCATTCA 535
consensus_4356#1      TTCAACAGACCACGCCTCTTTTTGAAGGTTTATCAA------------------------ 514
                      ************************************                        

consensus_4356#0      CCAAACGACGTTGCCTGTATCTTTTCAAGCTGTGTAGGCCAATTGGTCCCAAGCAAATGT 595
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      GGATCAGATTCCATAGCGACAGCAAAATCTTGTAGTGTTGTACAATGACCATGATTGGCT 655
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      TGTTGCAAGCCATTCATCCTAGCTGCAAACATAGCATTGCCTTTGGTAACTCTTCTACCG 715
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      CTGGACCTTGACCTGGACAATTCCATGCATGGTTTAATCAACCTCCGCAAAAACTCATCT 775
consensus_4356#1      ------------------------------------------------------------
                                                                                  

consensus_4356#0      AATCCACGATTTAAAACTTCAACACCCTGCACCGACACTCCAATGCCATCACTCTCCAAC 835
consensus_4356#1      ------------------------------------------------------------