These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2190 fasta sequence [ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTTTGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGTAATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCAT-AACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTTTGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAATCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTAAAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCATTCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAAAGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAATGTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCTTGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAGATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGCTCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGTTTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACTGCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTTATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAATGTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAACGTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGTGAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAGTGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGGCCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAGAGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGATGATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGGGGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCTGTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAGATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTCCTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTAATGCAACAGAAAATGAATGCCAGCCATTTC] [+] EMBL AK065666 [ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTTTGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGTAATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCAT AACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTTTGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAATCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTAAAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCATTCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAAAGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAATGTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCTTGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAGATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGCTCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGTTTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACTGCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTTATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAATGTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAACGTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGTGAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAGTGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGGCCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAGAGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGATGATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGGGGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCTGTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAGATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTCCTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTAATGCAACAGAAAATGAATGCCAGCCATTTC] [+] EMBL CF323088 [ TTCAAGGGAACAGATGACCTCAAAGAATATAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGCGCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCTCGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGGCTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTTCTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATTGAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATGTTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTTTAACACACGGAATTCATCAACTCCAGTTCGTATCACTGCATCAT ] consensusID : consensus_4357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [TATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAAAAAAAAAACCCCTGTCCATGCCGTTACTTTTTTTTT] [+] EMBL CF330414 [TATGTGTAAATTTTGAGCTTTGTACAAAGATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAAATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAAAAAAAAAAAAACCCCTGTCCATGCCGTTACTTTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4357#0 ATACATTGTTCTTGATTTATTGCAAATGCAAAGCTTGGAAGACCAAAGAGATGCTAATTT 60 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TGGGCTTCCTAAAGAAGAATCATCAATTAAAGGAAGATGTCTTGTGGCTGCCATTAAGGT 120 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 AATAGATGAGTGTCTGCGTGTTTCATCTGGATTCAAGGGAACAGATGACCTCAAAGAATA 180 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TAGATTGCAAGATATTCAGCAAATTTCTGATTGTACCATAAACAAAACTATCAAATCTGC 240 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GCCTCACTTTGAGACTGATGTTCCTGGACCATCACAAAATTTTACTTTGGACATAACTCT 300 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 CGGAACTAATCGTTGGATTGAGGTGATAGAAAGGCTTCTCCCTCAAGGATTATCACATGG 360 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 CTCTGCTACGGTCAGGACAGCATCACTGACATGTTTCGCGGGCATGACTTATGATGTTTT 420 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 CTTCTCCCTGCCAGAAAACAAGAGGGATTATGTGACGTCCTCATCGATTCATGCTGCATT 480 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GAGTGATACAGCTCCTGCTGTAAGGTCTGCTGCATGTAGAGCCATTGGTATTGTTGCATG 540 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TTTCCCCAGCATACTGTCAAGTCCTAGCCTACCTGGCAAGTTCATAGATGCCATTGAGTT 600 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TAACACACGGAATTCATAACTCCAGTTCGTATCACTGCATCATGGGCCTTGGCAAATCTT 660 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TGCTCTTCTATTCGTTTTAGAGCATTAGATACCAATCCCTCTGCAGGTGTACTAGATAAA 720 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TCAGCCATATCATTGCTGGTTGAAATTGCTTTGCGCCTTGCTAAAGATGGTGAAAAGGTA 780 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 AAGTCAAACGCTGTTAGGGCTCTTGGATACCTTTTAAGATTTATCAGATTCAATAATCAT 840 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TCTGACACAGTTGATGACCCAAGTAATTCCGTTCTCTGTGGAGATCCTGTCTGGCTTGAA 900 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 AGGATGGTACATGCTTTGATGTCCTGTGTGACAACAGGAAATGTAAAGGTTCAATGGAAT 960 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GTTTGCCATGCTCTTAGCAACTTATTCATGAACGACACCTTGAGACTTCCAGATATGCCT 1020 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TGGGCATCAAGTGTTTATAGCATACTTCTGCTACTACTCCGTGACTCAAACAATTACAAG 1080 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 ATAAGGATGCATGCAGCTGTTGCCTTAGCAGTTCCAGTCTCACGGCTTGATTATGGTAGC 1140 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TCATTTCCAGATGTTGTTCGAGGAATCGAGCATGTTCTTGAGTCATTGAGTTCCAACAGT 1200 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TTATCATCACCTTCAAATTTCAAACATAAAGGCAACCTTGAGAAACAGGTTACATTTACT 1260 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GCTCTTCATTTGTTTAGTTTTGTTTCACCAAAAGATGATCAAAGCCTGAGAGATTTTCTT 1320 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 ATCAAGAAAGCATCCTTTCTAGAAGACTGGCTGAAGTCATTGTTCTCATTGTTCAATAAT 1380 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GTTGAGGACCAGCCTTTGGCAAATGAGGCCATAAATGACGAGGATGGTTTCAGCCCAAAC 1440 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GTGGCACAAAAAGCTATGTTGTCTTCTGCTGTGAAGTCCTTGCTCGACATATATACAAGT 1500 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GAAAATCAGCACACTGTTGCTCAGAGATTTGAGCAATTGGCAAGAAGCCTAGAATTATAG 1560 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 TGTGAATGACAAAACATAGATGGTGGTCTCGATCCCCATTAACAAGCAGCATGACAGTGG 1620 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 CCGTCTTCCTCCCGGAAAAGCCAACTCATCATCTATTCATTTTCAATCTCCTTCATAAAG 1680 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 AGAGGCAACATGCCCTATTGCAAGTATTCCATGAACTCAATGAAGCTTCTGAATTTCGAT 1740 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GATACCAGACGTTGGACATTATGTTCATGAACAAGCTCCTGGCAGCTTCTAATGGGAAGG 1800 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GGGGGGGGGATTCAAAACTGCATCTGCGTATCTTATTTATATTGTAAAATAGCTTTACCT 1860 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 GTTTTTTCCAGGTGTGGCCATGTTCTGCACCTTATGTGTAAATTTTGAGCTTTGTACAAA 1920 consensus_4357#1 --------------------------------TATGTGTAAATTTTGAGCTTTGTACAAA 28 **************************** consensus_4357#0 GATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAA 1980 consensus_4357#1 GATTTGCATGATCATATCATTGTGAGTGTACCATATATGTCTCAGCATTTTAGTGAGGAA 88 ************************************************************ consensus_4357#0 ATCTTCCACAAATTTTGTATGTACATTTCTGGTAGACCAGATAGCTTCATGCTACTTAAG 2040 consensus_4357#1 ATTTTCCACAAAAAAAAAAAAAAAAAAAAAAATTTTTAAAAAAAA---AAAAAAAAAAAC 145 ** ********* * * * * * * * * * ** consensus_4357#0 ATTTGTCCTGGGCTTGAATGCCTGGTTAGCTTGATTAGACCACTAGCTTGATGATTGTTC 2100 consensus_4357#1 CCCTGTCCATGCCGTTACTTTTTTTTT--------------------------------- 172 ***** * * * * * * ** consensus_4357#0 CTCACTATCTATTACTCCTATCTGTTAGTACTGAAAAACTGATCAGTTGTCAATGTCTTA 2160 consensus_4357#1 ------------------------------------------------------------ consensus_4357#0 ATGCAACAGAAAATGAATGCCAGCCATTTC 2190 consensus_4357#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||