cluster # 436

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Oryza sativa
cluster # 436 cluster # 436 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_436#0 length = 1090 sequences # 1

consensus_436#1 length = 538 sequences # 1

consensusID : consensus_436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1090
fasta sequence

                              [CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGAAGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAAATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTAGAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACGTTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGTTAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATATTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGTAATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTTGAGTAATTTAGAT]

[+] EMBL AK066394             [CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGAAGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAAATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTAGAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACGTTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGTTAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACATAGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTTCAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATATTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGTAATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTTGAGTAATTTAGAT]




>consensus_436#0
CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTA
TTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGG
CGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGA
AGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAA
ATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTA
GAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACG
TTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGT
TAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACAT
AGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTATATTTGTATGCAGATG
ATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGCAA
GGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAAAC
ATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGATGG
GCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCGTT
GATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAGTT
CAGACATTACCCCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCCTCA
TTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATATTG
TATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGTAAT
CTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTTGAG
TAATTTAGAT

consensusID : consensus_436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [AATTTTTAAACCGTTATTTGAATAGGCGATCAGGAACCGTGGATGAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTACAAGTTTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGCCGTTGATCTCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCTCCTGCAGCCAACCCTAGCCGCCACCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGCCTGTGCTGCTGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTTGCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCTTGATCAGAGAGAAGGGTACCGAGAGGGTGT]

[+] EMBL CB638397             [AATTTTTAAACCGTTATTTGAATAGGCGATCAGGAACCGTGGATGAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTACAAGTTTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGCCGTTGATCTCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCTCCTGCAGCCAACCCTAGCCGCCACCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGCCTGTGCTGCTGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTTGCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCTTGATCAGAGAGAAGGGTACCGAGAGGGTGT]




>consensus_436#1
AATTTTTAAACCGTTATTTGAATAGGCGATCAGGAACCGTGGATGAGTAGAGCTCGAGGA
GTAGTGCAAAATAGACTACAAGTTTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATT
GAAACGATGTGGGCCGTTGATCTCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAA
AGGGGAACGCTCCTGCAGCCAACCCTAGCCGCCACCACGCCTTCCGTCCTGCGCTCTTGC
CGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTATTTGCGCCGCCGCCATGGCCATACCC
GGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCTTCC
CGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGCCTGTGCTGC
TGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTTGCTCCTA
ACGTGGCCCTGCTGCTGTTGCTGCTGCTTGATCAGAGAGAAGGGTACCGAGAGGGTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_436#0      CCACGCCTTCCGTCCTGCGCTCTTGCCGCTGCCGCTGTTGACCCGGTTGCTGCCGCCGTA 60
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      TTTGCGCCGCCGCCATGGCCATACCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGG 120
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      CGTTTTCTTTCCGTTTTCCTTCTTCCCGAGAGAAGGGTACCGAGAGGGTGTACAGGAGGA 180
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      AGAAGGAAAGGAAAAGCAGAGCAACGTTGAGGAATTTCAGCGATTTCGCAAATTAGGGAA 240
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      ATTTGTCGCAAGCTATGCCGCCTCGGATAGCCAATCGAGGCCGTGGGAGAGGCGGTGGTA 300
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      GAGGTCGTGGTAGGGGCCACCATAATGAAGAAGTTGAGAATAATCATGATAATGAAGACG 360
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      TTGGGAACAATTCGATTGCTGAATCCACTATTCCTAATCGTGGAGGTTGTTGGCGGTTGT 420
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      TAAATGCCGATTCTATACCGCCAACATCTGCATAAGTTCGGATAATAAAACATCCAACAT 480
consensus_436#1      ------------------------------------------------------------
                                                                                 

consensus_436#0      AGTGATAGGTGCTTAATCTCACATATTCCACAAGTGTTGGTGTAT-ATTTGTATGCA-GA 538
consensus_436#1      -------------------------------AATTTTTAAACCGTTATTTGAATAGGCGA 29
                                                    ** * **      * ***** **    **

consensus_436#0      TGATAAACCCTGAAGTTGGGAGGAAAATCAGACAAAGTGAGGAGAATTATGTATCCATGC 598
consensus_436#1      TCAGGAACCGTGGAT----GAGTAGAGCTCGAGGAGTAGTGCAAAATAGACTA--CAAGT 83
                     * *  **** ** *     *** * *    **  *   * * * ***    **  ** * 

consensus_436#0      AAGGAGGGGTTATGAACTTCATCGAAACATCAGCAAGGAGGGGTTATGAACTTCATCGAA 658
consensus_436#1      TTATAGAAATCGGAGACCGAGCAAAGTCCCCGGGATTGAAACGATGTGGGC--CGTTGA- 140
                         **   *     **       *  *  * * *  **   * * **  *  * * ** 

consensus_436#0      ACATCAGTGAATCAACTCAAAACTCCGAGAAATGGATAAAGGAGGTCCAGGGGAGAAGAT 718
consensus_436#1      ---TC------TCCTTTTTAGTCTCTTTATAATAAAAAAAAGAAATAAAAGGGGAACGCT 191
                        **      **   *  *  ***     ***  * *** **  *  * ***  * * *

consensus_436#0      GGGCCAAGGGCTAGACCAGGAGGGCCTAGCCTAGGTTCGGCCGAACCCCCCTGATCACCG 778
consensus_436#1      ---CCTGCAGCCAACCCTAGCCG--CCACCACGCCTTCCGTCCTGCGCTCTTG----CCG 242
                        **    ** *  **  *  *  * * *     *** * *   * * * **    ***

consensus_436#0      TTGATCCTGGGGTTTGGCGTGGACGCTCCAGATCACTCCCCAATGACGGTTGCGGGGCAG 838
consensus_436#1      CTGCCGCTG----TTGACCCGGTTGCTGCCG-CCGTATTTGCGCCGCCGCCATGGCCATA 297
                      **   ***    *** *  **  *** * *  *            * *    **     

consensus_436#0      TTCAGACATTACC-CCTTCGCCAACCGTCATACCTAACTCTATATAAAGGCTTCACTCCC 897
consensus_436#1      CCCGGAGGCCGCAGCCGTCGTCATCCATCACAACCGGCGTTTTCTTTCCGTTTTCCTTCT 357
                       * **     *  ** *** ** ** *** * *   *  * * *    * **  ** * 

consensus_436#0      TCATTTCACACACACACTTTCAAGCTTGACCTGAATTATAAGAGGCTCTATTGTACTATA 957
consensus_436#1      TCCCGGTGAGTTCCTGCTGCTCCTTCTATCGTTGCCGATCTGTGTTGCTGCGGC-CTGTG 416
                     **          *   **        *  * *     **  * *   **   *  ** * 

consensus_436#0      TTGTATATTAGAATAGGAAGAGAGTAGAGTAGGAGTCAGAAGAATTCCGGAGTTGTCGGT 1017
consensus_436#1      CTGC---TGCGGCTGCTGCCGAGCTGCTGTTGCTGTTGCTTGTTCCTTGCTGCTGCTGTT 473
                      **    *  *  *          *   ** *  **     *      *  * **  * *

consensus_436#0      AATCTTCTCCTATTTCTTTTATTTTGTTTATTACTCTGAATTCAATATAATATTCTTCTT 1077
consensus_436#1      GCTCCTAACGTGGCCCTGCTGCTGTTGCTGCTGCT-TGATCAGAGAGAAGGGTACCGAGA 532
                       ** *  * *    **  *  * *   *  * ** ***    *    *   * *     

consensus_436#0      GAGTAATTTAGAT 1090
consensus_436#1      GGGTGT------- 538
                     * **