Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4364 cluster # 4364       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4364#0 length = 2169 sequences # 2  
consensus_4364#1 length = 1450 sequences # 1  

consensusID : consensus_4364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2169
fasta sequence
                              [CCCCACACACTCCACTCCACTCCACTCCACTCTTTTCGCTCGCGTCGCTTCCCAAACCCTCTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGCGACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCCGCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACCCTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTCCGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGGCTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGACGCGCCGGAGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCCTGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCCAAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGCCGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAAGTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATCGAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGGGTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTT-GGAGGTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGGAATATAGAGTAAGACACTGCAGTTATTTGATGCTGTTCTGCCTATGTAAAACTCCCATTTGTCTTGCTGTGCTCAAGTCTTGTAGCTGTCAGCTTCTTGAGGCTCTTCTCTAAATTATCATCATTGGGACTCGCATGTTTATTAACCATGTTTCAATTGTTAGCTTGAAAAATCCAGTTTTCTATCAGTTGCATTTACGAAGTATTATAGTTTGTACATTTCACTATGCATGGTAAAAATTAAAATTAAAATTATAGTTTGACGCCCATAATCTGATATTACCTTTTAGTAGATAATCCCTCCAGTCTTGAATATTTGACATTCCAAACATACATTTGGCCAAACTTTTGAAAGTTTCACCTTTTGTCTTTTCCCGTGTTTACAAGACCATGTTGATTATCCAAATGACAAGATATGCAGTAGGCTTGTATGAAGACCCTGATAGAAGATCTTAACTAATTAAAAGATTAGTATTTTTCCAATCGTCACCAAAATTAGTATTAGTATTTTTCGTCCGTATGTGCAATTTTTTTCACTCGTCCGTGTACGATCTCCTCCCAAAATTTTGGTTCATTAGTACACGCGAGATCGAGAGACCGCATCGCTCCCGTCCCGTACGCGCGTAGAAGCCCAGAACTAATGCACGGAAACGAAAGAAACTGAATCACAAATCCAACAACAATAAAGCAAAACCATCCCAAAAATTAAATCACCGGGGCCAAAAAAAGG]

[+] EMBL AK106370             [CCCCACACACTCCACTCCACTCCACTCCACTCTTTTCGCTCGCGTCGCTTCCCAAACCCTCTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGCGACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCCGCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACCCTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTCCGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGGCTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGACGCGCCGGAGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCCTGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCCAAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGCCGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAAGTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATCGAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGGGTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTT GGAGGTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGGAATATAGAGTAAGACACTGCAGTTATTTGATGCTGTTCTGCCTATGTAAAACTCCCATTTGTCTTGCTGTGCTCAAGTCTTGTAGCTGTCAGCTTCTTGAGGCTCTTCTCTAAATTATCATCATTGGGACTCGCATGTTTATTAACCATGTTTCAATTGTTAGCTTGAAAAATCCAGTTTTCTATCAGTTGCATTTACGAAGTATTATAGTTTGTACATTTCACTATGCATGGTAAAAATTAAAATTAAAATTATAGTTTGACGCCCATAATCTGATATTACCTTTTAGTAGATAATCCCTCCAGTCTTGAATATTTGACATTCCAAACATACATTTGGCCAAACTTTTGAAAGTTTCACCTTTTGTCTTTTCCCGTGTTTACAAGACCATGTTGATTATCCAAATGACAAGATATGCAGTAGGCTTGTATGAAGACCCTGATAGAAGATCTTAACTAATTAAAAGATTAGTATTTTTCCAATCGTCACCAAAATTAGTATTAGTATTTTTCGTCCGTATGTGCAATTTTTTTCACTCGTCCGTGTACGATCTCCTCCCAAAATTTTGGTTCATTAGTACACGCGAGATCGAGAGACCGCATCGCTCCCGTCCCGTACGCGCGTAGAAGCCCAGAACTAATGCACGGAAACGAAAGAAACTGAATCACAAATCCAACAACAATAAAGCAAAACCATCCCAAAAATTAAATCACCGGGGCCAAAAAAAGG]
[+] EMBL CF323179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTTGGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_4364#0 CCCCACACACTCCACTCCACTCCACTCCACTCTTTTCGCTCGCGTCGCTTCCCAAACCCT CTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGC GACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCC GCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACC CTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTC CGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGG CTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGAC GCGCCGGAGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCC TGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCC AAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGC CGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAA GTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATC GAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGG GTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGG GATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCG TATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAA TTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGC GATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATT TTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGG TAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGAC ACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCT TGGTGATGTGAAAAATAGCATTTTGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAAC ATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTT GAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGG AATATAGAGTAAGACACTGCAGTTATTTGATGCTGTTCTGCCTATGTAAAACTCCCATTT GTCTTGCTGTGCTCAAGTCTTGTAGCTGTCAGCTTCTTGAGGCTCTTCTCTAAATTATCA TCATTGGGACTCGCATGTTTATTAACCATGTTTCAATTGTTAGCTTGAAAAATCCAGTTT TCTATCAGTTGCATTTACGAAGTATTATAGTTTGTACATTTCACTATGCATGGTAAAAAT TAAAATTAAAATTATAGTTTGACGCCCATAATCTGATATTACCTTTTAGTAGATAATCCC TCCAGTCTTGAATATTTGACATTCCAAACATACATTTGGCCAAACTTTTGAAAGTTTCAC CTTTTGTCTTTTCCCGTGTTTACAAGACCATGTTGATTATCCAAATGACAAGATATGCAG TAGGCTTGTATGAAGACCCTGATAGAAGATCTTAACTAATTAAAAGATTAGTATTTTTCC AATCGTCACCAAAATTAGTATTAGTATTTTTCGTCCGTATGTGCAATTTTTTTCACTCGT CCGTGTACGATCTCCTCCCAAAATTTTGGTTCATTAGTACACGCGAGATCGAGAGACCGC ATCGCTCCCGTCCCGTACGCGCGTAGAAGCCCAGAACTAATGCACGGAAACGAAAGAAAC TGAATCACAAATCCAACAACAATAAAGCAAAACCATCCCAAAAATTAAATCACCGGGGCC AAAAAAAGG



consensusID : consensus_4364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1450
fasta sequence
                              [CACTCTTTTCGCTCGCGTCGCTTCCCAAACCCTCTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGCGACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCCGCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACCCTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTCCGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGGCTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGACGCGCCGGGGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCCTGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCCAAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGCCGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAAGTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATCGAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGGGTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGTATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTTGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGGAATATAGAGTAAGACACTGCAGATAAAAAAAAAAAAAA]

[+] EMBL AK109909             [CACTCTTTTCGCTCGCGTCGCTTCCCAAACCCTCTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGCGACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCCGCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACCCTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTCCGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGGCTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGACGCGCCGGGGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCCTGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCCAAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGCCGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAAGTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATCGAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGGGTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGTATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTTGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGGAATATAGAGTAAGACACTGCAGATAAAAAAAAAAAAAA]


>consensus_4364#1 CACTCTTTTCGCTCGCGTCGCTTCCCAAACCCTCTCTCTCCTCAAAACCCTAGCGTCGCC CGCTTCGCCTGAGCTCCGGCGATGGACGGCGGCGACCGCCTCAGCGCGCTCCCCAACGAC GTCCTCCACCTCATCCTCCTCCGCCTCCGCTCCGCCGAGGCCGCCGCGCGCACCAGCGTC CTGGCCCGCCGCTGGCGCCACGTCTGGGCCACCCTCCCGGAGCTCCGGTTCAGGATGGAC GTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTCCGCCGCCTCGAGGTCTCCACCGACGCG GACGACCCGGCGGCGTCGACGGCCGCGCTCCGGCTCGCCGCGCCGCGCGTCGCCGGCGAA CTCAGCTTCTGCATCTGGCCGCGGTGGGACGACGCGCCGGGGGAGGATGACGGGCCGGCG CCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCCTGCTTCGAGAAGGCCACCGAGCTCTGG CTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCCAAATCCGGCGTGTTCGCGCAGCTCACC GCGCTCGCCTTCCGCGACGTCCGCTTCACCGGCCGCTGCGATCTCGGCGCCGTCGTCTCC TCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAAGTCCACGACTCCCAGGATCTGTATAAC CTGACCATCTTCTCGGAGTCCCTCCTCCACATCGAGCTGAGCGACCTCCATGGCGGGATG GGGCGGCTCATGATCGTGGCGCCGCTGCTTCGGGTTCTTGATGTGCGCCATTGCTTCTAC TGGAGGACGTACAGGTCCCATTCCCTTGTTCGGGATCAACCATATGCCGCGGTCTTCACG CCCGCGCTGGAGGATCTCATCTGGGTTGATGCGTATGATCCTACCACGGTCCAATTTGGC GGCGTTAAACGCCTCCGGAAGCTGGTTACCCAATTACAGTGTATGGACTCTCTCGCTGCA CTGATCACATGAATTCAGTAATGCTCTTGCGGCGATTTGAGACGGTATCCATTCTTCAGC TAGAACTTGACTATCCAGAGGTAACTGCACATTTTCCCTAAATCTGGCATGAATGTCATT GAATAAAACATAGAGATTGAAATATTTGTTTGGTAGACTCTAGTCATAGTGTGCATGGAC TTCATTCAGTATATACCTTCATAAGTATTGACACAGCTGCCCTGGTGAAATGTGTTAGAT ATTTATCTTTTATGTATTGAAACAATTGCCCTTGGTGATGTGAAAAATAGCATTTTGGAG GTCCTGGATCTGCTATCGCACTGGTACTGAACATATGAGATACTGAGGAACGGTATTGAT CAACCAGATTTAGCCAAAGAAGACTAGAATTTGAGTAGTCTGTCCCACAAACAGGAAGTG GGCTCAGTTTTGGTTCTATGCATGAATGGTGGAATATAGAGTAAGACACTGCAGATAAAA AAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4364#0      CCCCACACACTCCACTCCACTCCACTCCACTCTTTTCGCTCGCGTCGCTTCCCAAACCCT 60
consensus_4364#1      ---------------------------CACTCTTTTCGCTCGCGTCGCTTCCCAAACCCT 33
                                                 *********************************

consensus_4364#0      CTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGC 120
consensus_4364#1      CTCTCTCCTCAAAACCCTAGCGTCGCCCGCTTCGCCTGAGCTCCGGCGATGGACGGCGGC 93
                      ************************************************************

consensus_4364#0      GACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCC 180
consensus_4364#1      GACCGCCTCAGCGCGCTCCCCAACGACGTCCTCCACCTCATCCTCCTCCGCCTCCGCTCC 153
                      ************************************************************

consensus_4364#0      GCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACC 240
consensus_4364#1      GCCGAGGCCGCCGCGCGCACCAGCGTCCTGGCCCGCCGCTGGCGCCACGTCTGGGCCACC 213
                      ************************************************************

consensus_4364#0      CTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTC 300
consensus_4364#1      CTCCCGGAGCTCCGGTTCAGGATGGACGTCAGCCTCGCCGCCCACGCGGCCCCGGCCCTC 273
                      ************************************************************

consensus_4364#0      CGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGG 360
consensus_4364#1      CGCCGCCTCGAGGTCTCCACCGACGCGGACGACCCGGCGGCGTCGACGGCCGCGCTCCGG 333
                      ************************************************************

consensus_4364#0      CTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGAC 420
consensus_4364#1      CTCGCCGCGCCGCGCGTCGCCGGCGAACTCAGCTTCTGCATCTGGCCGCGGTGGGACGAC 393
                      ************************************************************

consensus_4364#0      GCGCCGGAGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCC 480
consensus_4364#1      GCGCCGGGGGAGGATGACGGGCCGGCGCCGGTGAGGCGCCCCGGCGTCGTCAAGCTCCCC 453
                      ******* ****************************************************

consensus_4364#0      TGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCC 540
consensus_4364#1      TGCTTCGAGAAGGCCACCGAGCTCTGGCTAATCCTCGGCCTCCTCGGCGTCTCGCTGCCC 513
                      ************************************************************

consensus_4364#0      AAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGC 600
consensus_4364#1      AAATCCGGCGTGTTCGCGCAGCTCACCGCGCTCGCCTTCCGCGACGTCCGCTTCACCGGC 573
                      ************************************************************

consensus_4364#0      CGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAA 660
consensus_4364#1      CGCTGCGATCTCGGCGCCGTCGTCTCCTCGAAGAGGTGCCCCGTCCTGCAAAAGCTCCAA 633
                      ************************************************************

consensus_4364#0      GTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATC 720
consensus_4364#1      GTCCACGACTCCCAGGATCTGTATAACCTGACCATCTTCTCGGAGTCCCTCCTCCACATC 693
                      ************************************************************

consensus_4364#0      GAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGG 780
consensus_4364#1      GAGCTGAGCGACCTCCATGGCGGGATGGGGCGGCTCATGATCGTGGCGCCGCTGCTTCGG 753
                      ************************************************************

consensus_4364#0      GTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGG 840
consensus_4364#1      GTTCTTGATGTGCGCCATTGCTTCTACTGGAGGACGTACAGGTCCCATTCCCTTGTTCGG 813
                      ************************************************************

consensus_4364#0      GATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCG 900
consensus_4364#1      GATCAACCATATGCCGCGGTCTTCACGCCCGCGCTGGAGGATCTCATCTGGGTTGATGCG 873
                      ************************************************************

consensus_4364#0      TATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAA 960
consensus_4364#1      TATGATCCTACCACGGTCCAATTTGGCGGCGTTAAACGCCTCCGGAAGCTGGTTACCCAA 933
                      ************************************************************

consensus_4364#0      TTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGC 1020
consensus_4364#1      TTACAGTGTATGGACTCTCTCGCTGCACTGATCACATGAATTCAGTAATGCTCTTGCGGC 993
                      ************************************************************

consensus_4364#0      GATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATT 1080
consensus_4364#1      GATTTGAGACGGTATCCATTCTTCAGCTAGAACTTGACTATCCAGAGGTAACTGCACATT 1053
                      ************************************************************

consensus_4364#0      TTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGG 1140
consensus_4364#1      TTCCCTAAATCTGGCATGAATGTCATTGAATAAAACATAGAGATTGAAATATTTGTTTGG 1113
                      ************************************************************

consensus_4364#0      TAGACTCTAGTCATAGTGTGCATGGACTTCATTCAGATATATACCTTCATAAGTATTGAC 1200
consensus_4364#1      TAGACTCTAGTCATAGTGTGCATGGACTTCATTCAG-TATATACCTTCATAAGTATTGAC 1172
                      ************************************ ***********************

consensus_4364#0      ACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCT 1260
consensus_4364#1      ACAGCTGCCCTGGTGAAATGTGTTAGATATTTATCTTTTATGTATTGAAACAATTGCCCT 1232
                      ************************************************************

consensus_4364#0      TGGTGATGTGAAAAATAGCATTTTGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAAC 1320
consensus_4364#1      TGGTGATGTGAAAAATAGCATTTTGGAGGTCCTGGATCTGCTATCGCACTGGTACTGAAC 1292
                      ************************************************************

consensus_4364#0      ATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTT 1380
consensus_4364#1      ATATGAGATACTGAGGAACGGTATTGATCAACCAGATTTAGCCAAAGAAGACTAGAATTT 1352
                      ************************************************************

consensus_4364#0      GAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGG 1440
consensus_4364#1      GAGTAGTCTGTCCCACAAACAGGAAGTGGGCTCAGTTTTGGTTCTATGCATGAATGGTGG 1412
                      ************************************************************

consensus_4364#0      AATATAGAGTAAGACACTGCAGTTATTTGATGCTGTTCTGCCTATGTAAAACTCCCATTT 1500
consensus_4364#1      AATATAGAGTAAGACACTGCAGATAAAAAAAAAAAAAA---------------------- 1450
                      ********************** **    *                              

consensus_4364#0      GTCTTGCTGTGCTCAAGTCTTGTAGCTGTCAGCTTCTTGAGGCTCTTCTCTAAATTATCA 1560
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TCATTGGGACTCGCATGTTTATTAACCATGTTTCAATTGTTAGCTTGAAAAATCCAGTTT 1620
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TCTATCAGTTGCATTTACGAAGTATTATAGTTTGTACATTTCACTATGCATGGTAAAAAT 1680
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TAAAATTAAAATTATAGTTTGACGCCCATAATCTGATATTACCTTTTAGTAGATAATCCC 1740
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TCCAGTCTTGAATATTTGACATTCCAAACATACATTTGGCCAAACTTTTGAAAGTTTCAC 1800
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      CTTTTGTCTTTTCCCGTGTTTACAAGACCATGTTGATTATCCAAATGACAAGATATGCAG 1860
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TAGGCTTGTATGAAGACCCTGATAGAAGATCTTAACTAATTAAAAGATTAGTATTTTTCC 1920
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      AATCGTCACCAAAATTAGTATTAGTATTTTTCGTCCGTATGTGCAATTTTTTTCACTCGT 1980
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      CCGTGTACGATCTCCTCCCAAAATTTTGGTTCATTAGTACACGCGAGATCGAGAGACCGC 2040
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      ATCGCTCCCGTCCCGTACGCGCGTAGAAGCCCAGAACTAATGCACGGAAACGAAAGAAAC 2100
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      TGAATCACAAATCCAACAACAATAAAGCAAAACCATCCCAAAAATTAAATCACCGGGGCC 2160
consensus_4364#1      ------------------------------------------------------------
                                                                                  

consensus_4364#0      AAAAAAAGG 2169
consensus_4364#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)