|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1850 fasta sequence
[AGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTAAATTCCTTCGCTTTTTCTCCGCTGGTTCGGAGATTTCCATGTTCACTTTTGTTTTTTTTTTTAATTAAGGGCTTTGCTTTGATGGAAGGGTTGGGTACTGGTTCCTTCCCTCCGGATCAATCTTGCTTCTTGCGCTCACCCAACCTAGTAATTTTTTCCTCTCCCGATTTGTTTAATGCTAATCTAGGTGGTTGATGATGCTTGCGAGCCAGGCATTGATTCGGCTTTAAGCTTGCCTGCTTGCTTCGCCGTCTTGTTCTTTGAGTTCTTGGTTTTCATGGATCCTTGATCCGATTTAGGGGTTGCTGCTGCTAGCCGTGGTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGAGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGACATCATGCACATGCAGTTGATATCCCATGGGATTCTTCACCATCGACATCTCGCCGAGATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTACTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTCAGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCCAGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGTTATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACTGGCGCTATCTCCATCGCAACCTCCCAACCACTGGGCAAGAGCCAACAGTTCAGAATATCCCTCCAAACAACACCCCTGAAGCTAATTCATATGGAGTAACCGGCACAAATGGAGTCTCAAGAAACAATGAGGCAACAGTAAATCCAAGGTTCCAAGCTTTTGCTGATCACTTCAAAATGGCTCTGGACTGTTTCTTTGCTGTGTGGTTCGTTGTGGGAAATGTATGGGTATTTGGTGGACATTCTTCTGCTCACGACGCGCCCAACTTGTACAGGTTGTGTATTGCCTTCCTCACATTCAGCTGCATCGGCTATGCTATGCCTTTCATCCTCTGCGCATTGATATGTTGCTGCCTACCCTGCATAATCTCTATCTTGGGATTTCGGGAAGATCTAAACCAAAACAGAGGAGCTAGTGCGGAAACAATCAATGCCTTGGGAACATGCAAGTTCAAGTCAAAGAAAACTCGTGATGGAGATGGAAACGAAGTTGGTGTCGGTGTTGTGGCTGCTGGAACAAACAAGGAGCGAGTCATTTCTGCAGAAGATGCTGTCTGCTGCATCTGCTTGGCCAGATATGTCGATAACGATGATCTCCGAGAGCTCCCTTGTGCGCACTTCTTCCACAAGGATTGTGTGGACAAATGGCTCAAGATAAACGCGCTGTGCCCCCTTTGCAAGGCTGAGATAGATGGTGTCTCCACAAGTGCTCCAGCCATTGGCTTTGGGCGTCGCCACAGCGACAACAGGGTAGGAAACGACATTGAATCACAACTATAACTCTCTTCCCACTTCGTTGGCAGCGTGGATCACGCCTTTGATGAGGCCTTCCACACATCAACCTGTAAATTATAGAGGTAGACATCAAGATGTAAAGGGTCCTCTTACGATCCAACAAAGTTCTTTTCTGAATGACTACTGCCTCCACTGTCAGTATATATTGCTTCCAGCATTT]
[+] EMBL AK071804 [AGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTAAATTCCTTCGCTTTTTCTCCGCTGGTTCGGAGATTTCCATGTTCACTTTTGTTTTTTTTTTTAATTAAGGGCTTTGCTTTGATGGAAGGGTTGGGTACTGGTTCCTTCCCTCCGGATCAATCTTGCTTCTTGCGCTCACCCAACCTAGTAATTTTTTCCTCTCCCGATTTGTTTAATGCTAATCTAGGTGGTTGATGATGCTTGCGAGCCAGGCATTGATTCGGCTTTAAGCTTGCCTGCTTGCTTCGCCGTCTTGTTCTTTGAGTTCTTGGTTTTCATGGATCCTTGATCCGATTTAGGGGTTGCTGCTGCTAGCCGTGGTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGAGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGACATCATGCACATGCAGTTGATATCCCATGGGATTCTTCACCATCGACATCTCGCCGAGATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTACTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTCAGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCCAGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGTTATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACTGGCGCTATCTCCATCGCAACCTCCCAACCACTGGGCAAGAGCCAACAGTTCAGAATATCCCTCCAAACAACACCCCTGAAGCTAATTCATATGGAGTAACCGGCACAAATGGAGTCTCAAGAAACAATGAGGCAACAGTAAATCCAAGGTTCCAAGCTTTTGCTGATCACTTCAAAATGGCTCTGGACTGTTTCTTTGCTGTGTGGTTCGTTGTGGGAAATGTATGGGTATTTGGTGGACATTCTTCTGCTCACGACGCGCCCAACTTGTACAGGTTGTGTATTGCCTTCCTCACATTCAGCTGCATCGGCTATGCTATGCCTTTCATCCTCTGCGCATTGATATGTTGCTGCCTACCCTGCATAATCTCTATCTTGGGATTTCGGGAAGATCTAAACCAAAACAGAGGAGCTAGTGCGGAAACAATCAATGCCTTGGGAACATGCAAGTTCAAGTCAAAGAAAACTCGTGATGGAGATGGAAACGAAGTTGGTGTCGGTGTTGTGGCTGCTGGAACAAACAAGGAGCGAGTCATTTCTGCAGAAGATGCTGTCTGCTGCATCTGCTTGGCCAGATATGTCGATAACGATGATCTCCGAGAGCTCCCTTGTGCGCACTTCTTCCACAAGGATTGTGTGGACAAATGGCTCAAGATAAACGCGCTGTGCCCCCTTTGCAAGGCTGAGATAGATGGTGTCTCCACAAGTGCTCCAGCCATTGGCTTTGGGCGTCGCCACAGCGACAACAGGGTAGGAAACGACATTGAATCACAACTATAACTCTCTTCCCACTTCGTTGGCAGCGTGGATCACGCCTTTGATGAGGCCTTCCACACATCAACCTGTAAATTATAGAGGTAGACATCAAGATGTAAAGGGTCCTCTTACGATCCAACAAAGTTCTTTTCTGAATGACTACTGCCTCCACTGTCAGTATATATTGCTTCCAGCATTT]
consensusID : consensus_4371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[ACTCGAGTCAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGACATCATGCACATGCAGTTGATATCCCATGGGATTCTTCACCATCGACATCTCGCCGAGATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTACTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTCAGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCCAGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGTTATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACTGGCGCTATCTCCATCGCACCCTCCCAACCACTGGNGCAGAGCCAACAGNTCAGAATATCCCT]
[+] EMBL CA754127 [ACTCGAGTCAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGACATCATGCACATGCAGTTGATATCCCATGGGATTCTTCACCATCGACATCTCGCCGAGATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTACTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTCAGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCCAGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGTTATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACTGGCGCTATCTCCATCGCACCCTCCCAACCACTGGNGCAGAGCCAACAGNTCAGAATATCCCT]
consensusID : consensus_4371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[TTTTTCCAAATATACTTCGCCACTGCAACGCAAAGGACGAAGAACTCGAGTCAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGGGTTGCTGCTGCTAGCCGTGGTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGAGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTNAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGNCATCAATGCACATGCAGTTGATATCCCATGGGATTCTTTCACCATCG]
[+] EMBL OSR16021A [TTTTTCCAAATATACTTCGCCACTGCAACGCAAAGGACGAAGAACTCGAGTCAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGGGTTGCTGCTGCTAGCCGTGGTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGAGGTGCTTTTCTGGGAGGTGTAACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAAACAAGAAGTNAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGNCATCAATGCACATGCAGTTGATATCCCATGGGATTCTTTCACCATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4371#0 AGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTAAATTCCTTCGCTTTTTCTCC 60
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GCTGGTTCGGAGATTTCCATGTTCACTTTTGTTTTTTTTTTTAATTAAGGGCTTTGCTTT 120
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GATGGAAGGGTTGGGTACTGGTTCCTTCCCTCCGGATCAATCTTGCTTCTTGCGCTCACC 180
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CAACCTAGTAATTTTTTCCTCTCCCGATTTGTTTAATGCTAATCTAGGTGGTTGATGATG 240
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CTTGCGAGCCAGGCATTGATTCGGCTTTAAGCTTGCCTGCTTGCTTCGCCGTCTTGTTCT 300
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ---------TTTTTCCAAATATACTTCGCCACTGCAACGCAAAGGACGAAGAACTCGAGT 51
consensus_4371#0 TTGAGTTCTTGGTTTTCATGGATCCTTGATCCGATTTAGGGGTTGCTGCTGCTAGCCGTG 360
consensus_4371#1 ------------------------------------------------------ACTCGA 6
consensus_4371#2 CAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGGGTTGCTGCTGCTAGCCGTG 111
*
consensus_4371#0 GTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGA--GGTGCTTTTCTGGGAGGTGT 418
consensus_4371#1 GTCAAGTCGCCGACTTTTGGAGTTCTCCTCGCCCCAGCTCGGTGCTTTTCTGGGAGGTGT 66
consensus_4371#2 GTTGGTGAGACGGTTCTTGGAGAAGGGGGATTTCTTGA--GGTGCTTTTCTGGGAGGTGT 169
** * ** * ****** * * ********************
consensus_4371#0 AACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAA 478
consensus_4371#1 AACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAA 126
consensus_4371#2 AACCAACTAAATTCCTATGCTACCTTCTGGTTGATGGCCGTCCCTCCTGTTGAATCAGAA 229
************************************************************
consensus_4371#0 ACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGA 538
consensus_4371#1 ACAAGAAGTGAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGA 186
consensus_4371#2 ACAAGAAGTNAAGAAACAGATAATTTCCCTTTACTTGCAGACCACATGGAAAATACTGGN 289
********* *************************************************
consensus_4371#0 CATCA-TGCACATGCAGTTGATATCCCATGGGATTCTT-CACCATCGACATCTCGCCGAG 596
consensus_4371#1 CATCA-TGCACATGCAGTTGATATCCCATGGGATTCTT-CACCATCGACATCTCGCCGAG 244
consensus_4371#2 CATCAATGCACATGCAGTTGATATCCCATGGGATTCTTTCACCATCG------------- 336
***** ******************************** ********
consensus_4371#0 ATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTA 656
consensus_4371#1 ATAATCATAATGGATTTGATCAATTACCTCGTATCTTAGAAGGTTCTCCTGGGACATCTA 304
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTC 716
consensus_4371#1 CTCCATCTAACTCTCAGAATGGTCCTCTAGCAAGAAGAGATGATAATCGTGGTCGTCGTC 364
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 AGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCC 776
consensus_4371#1 AGCCTAGTCCCTTGAATTCTGGTTGCTGGATCTCAGTTGAGCTAGTTGTAAATGTTAGCC 424
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 AGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGT 836
consensus_4371#1 AGATCATAGCAGCTATTTGTGTTCTGTCAGTATCAAGGAATGAGCATCCACACTCTCCGT 484
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 TATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACT 896
consensus_4371#1 TATTTGAGTGGGTCATTGGTTATACAGTAGGTTGTACTGCCACGCTGCCTCATCTTTACT 544
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GGCGCTATCTCCATCGCAACCTCCCAACCACTGGGCAAGAGCCAACAGTTCAGAATATCC 956
consensus_4371#1 GGCGCTATCTCCATCGCACCCTCCCAACCACTGGNGCAGAGCCAACAGNTCAGAATATCC 604
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CTCCAAACAACACCCCTGAAGCTAATTCATATGGAGTAACCGGCACAAATGGAGTCTCAA 1016
consensus_4371#1 CT---------------------------------------------------------- 606
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GAAACAATGAGGCAACAGTAAATCCAAGGTTCCAAGCTTTTGCTGATCACTTCAAAATGG 1076
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CTCTGGACTGTTTCTTTGCTGTGTGGTTCGTTGTGGGAAATGTATGGGTATTTGGTGGAC 1136
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 ATTCTTCTGCTCACGACGCGCCCAACTTGTACAGGTTGTGTATTGCCTTCCTCACATTCA 1196
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GCTGCATCGGCTATGCTATGCCTTTCATCCTCTGCGCATTGATATGTTGCTGCCTACCCT 1256
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GCATAATCTCTATCTTGGGATTTCGGGAAGATCTAAACCAAAACAGAGGAGCTAGTGCGG 1316
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 AAACAATCAATGCCTTGGGAACATGCAAGTTCAAGTCAAAGAAAACTCGTGATGGAGATG 1376
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GAAACGAAGTTGGTGTCGGTGTTGTGGCTGCTGGAACAAACAAGGAGCGAGTCATTTCTG 1436
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CAGAAGATGCTGTCTGCTGCATCTGCTTGGCCAGATATGTCGATAACGATGATCTCCGAG 1496
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 AGCTCCCTTGTGCGCACTTCTTCCACAAGGATTGTGTGGACAAATGGCTCAAGATAAACG 1556
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CGCTGTGCCCCCTTTGCAAGGCTGAGATAGATGGTGTCTCCACAAGTGCTCCAGCCATTG 1616
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 GCTTTGGGCGTCGCCACAGCGACAACAGGGTAGGAAACGACATTGAATCACAACTATAAC 1676
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 TCTCTTCCCACTTCGTTGGCAGCGTGGATCACGCCTTTGATGAGGCCTTCCACACATCAA 1736
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 CCTGTAAATTATAGAGGTAGACATCAAGATGTAAAGGGTCCTCTTACGATCCAACAAAGT 1796
consensus_4371#1 ------------------------------------------------------------
consensus_4371#2 ------------------------------------------------------------
consensus_4371#0 TCTTTTCTGAATGACTACTGCCTCCACTGTCAGTATATATTGCTTCCAGCATTT 1850
consensus_4371#1 ------------------------------------------------------
consensus_4371#2 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||