These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 424 fasta sequence [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTGCGGGCAACGAAACCCTACCTAACGGGATGACAGGGG-TCTTTTTTTTTTTTTGCTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCTAACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGATGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTTTTTTT] [+] EMBL CF315746 [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTTGCGGGCAACGAAACCCTACCTAACGGGATGACAGGGG TCTTTTTTTTTTTTTGCTGGCAACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCTAACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGATGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGGGTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTTTTTTT] [+] EMBL CF314649 [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGG TTTTTTTTTTTTTTTTTGCTGGCAACGAAACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAACCCCTCCTAACGGGATGACAGGGGTTTTTT ] consensusID : consensus_4372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 159 fasta sequence [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTGCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT] [+] EMBL CF314038 [TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTGCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCAACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4372#0 TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTTTT 60 consensus_4372#1 TTTTGCTGGCAACGATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTT----T 56 ******************************************************* * consensus_4372#0 GCGGGCAACGAAACCCTACCTAACGGGATGACAGGGGTCTTTTTTTTTTTTT-GCTGGCA 119 consensus_4372#1 GCTGGCAACCATACCCTACGTAACGGCATGACAGGGGTTTTTTTTTTTTTTTTGGTGGCA 116 ** ****** * ******* ****** *********** ************* * ***** consensus_4372#0 ACGATACCCTACCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTTTGGGGGCAACCAAA 179 consensus_4372#1 ACGATACCCTACGTAACGGGATGACAGGGGTTTTTTTTTTTTT----------------- 159 ************ ****************************** consensus_4372#0 CCCTTCCTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTGGCAACCAAACCCTCCCT 239 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 AACGGGATGAAAGGGGTTTTTTTTTTTTTTTTGGTGGCAAAAAAACCCCGGGTAAAGGGA 299 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 TGAAAAGGGTTTTTTTTTTTTTTTGGGGGCAAAAAAACCCCCCCTAACGGGGTGAAAAGG 359 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 GTTTTTTTTTTTTTTTTTTTTGTGGGAAAAAAACCCCCCCTAAAGGGGTGAAAAGGGGTT 419 consensus_4372#1 ------------------------------------------------------------ consensus_4372#0 TTTTT 424 consensus_4372#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||