These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1931 fasta sequence [AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATTCCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCGGCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAGAGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGCAGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAGGGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAGAGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAGGACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTGGAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTCTCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATCATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCTTCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGATTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGTTATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGGGCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCATGTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAGCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATCATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAGGTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGTATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTTCCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAAACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTCGACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCCCCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCGCGTGGCCGGTGTGGGT] [+] EMBL AK066100 [AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATTCCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCGGCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAGAGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGCAGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAGGGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAGAGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAGGACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTGGAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTCTCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATCATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCTTCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGATTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGTTATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGGGCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCATGTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAGCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGT ] [-] EMBL AK110518 [ GTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACGTCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATCATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAGGTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGTATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTTCCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAAACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTCGACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCCCCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCGCGTGGCCGGTGTGGGT] consensusID : consensus_4377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAAGTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACGGCGGAAGGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTTGCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC] [-] EMBL CA754040 [TTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAAGTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACGGCGGAAGGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTTGCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4377#0 AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATT 60 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 CCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCG 120 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAG 180 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 AGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGC 240 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 AGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAG 300 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAG 360 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 AGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAG 420 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTG 480 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTC 540 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 TCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATC 600 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 ATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCT 660 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 TCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGA 720 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 TTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGT 780 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 TATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGG 840 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCAT 900 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAG 960 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 CTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACAC 1020 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATC 1080 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 ATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAG 1140 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGT 1200 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 ATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTT 1260 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 CCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAA 1320 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 ACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTC 1380 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 GACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCC 1440 consensus_4377#1 ------------------------------------------------------------ consensus_4377#0 CCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGC 1500 consensus_4377#1 -----------------------------------------------TTAGCCAGTCAGC 13 ************* consensus_4377#0 TGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTC 1560 consensus_4377#1 TGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTC 73 ***************************** ****************************** consensus_4377#0 TGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCAC 1620 consensus_4377#1 TGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCAC 133 **** ******************************************************* consensus_4377#0 TACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTG 1680 consensus_4377#1 TACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTG 193 ************************************************************ consensus_4377#0 TGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATT 1740 consensus_4377#1 TGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATT 253 ********** ************************************************* consensus_4377#0 GAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACC 1800 consensus_4377#1 GAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACC 313 ************************************************************ consensus_4377#0 AACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCT---- 1856 consensus_4377#1 AACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAA 373 ********************************** ******************* consensus_4377#0 -TCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCG 1915 consensus_4377#1 GTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACG-GCGGAA 432 ** ** * * * *** * ** * **** * ** * ** * * ** ** * consensus_4377#0 CGTGGCCGGTGTGGGT-------------------------------------------- 1931 consensus_4377#1 GGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTT 492 ** ***** * ** consensus_4377#0 ------------------------------------------------------------ consensus_4377#1 GCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGG 552 consensus_4377#0 -------------------------------------- consensus_4377#1 CGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC 590 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||