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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1931 fasta sequence
[AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATTCCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCGGCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAGAGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGCAGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAGGGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAGAGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAGGACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTGGAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTCTCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATCATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCTTCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGATTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGTTATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGGGCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCATGTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAGCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATCATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAGGTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGTATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTTCCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAAACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTCGACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCCCCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCGCGTGGCCGGTGTGGGT]
[+] EMBL AK066100 [AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATTCCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCGGCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAGAGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGCAGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAGGGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAGAGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAGGACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTGGAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTCTCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATCATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCTTCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGATTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGTTATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGGGCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCATGTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAGCTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGT ]
[-] EMBL AK110518 [ GTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACGTCTCTACACGGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATCATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAGGTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGTATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTTCCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAAACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTCGACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCCCCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCGCGTGGCCGGTGTGGGT]
consensusID : consensus_4377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[TTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAAGTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACGGCGGAAGGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTTGCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC]
[-] EMBL CA754040 [TTAGCCAGTCAGCTGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTCTGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCACTACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTGTGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATTGAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACCAACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAAGTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACGGCGGAAGGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTTGCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4377#0 AACCCGCGCGCGCCATGGAAACCGCCGCCTCGGCGTCCACCTCAACGCCGGAGGGGGATT 60
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 CCGGCCAACATGCCGCCGCCGCTCCGCCGCGCATGACCACCGTATCCAAGCACTACTTCG 120
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GCGGCGCCTCATCGGCCCACAACCACGACCTCCGGGTGGACATCATCGAGAATATAGAAG 180
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 AGGATTACGGGATGTTTGTCTGGCCATGCAGTGTCATTCTAGCAGAGTACGTGTGGCAGC 240
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 AGAGGTCACGCTTCACTGCCTCCACAGTTGTCGAGCTTGGTGCCGGAACCTCACTACCAG 300
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GGTTAGTAGCTGCAAAGGTTGGAGCAGACGTCACACTGACAGACATCGCACATAATACAG 360
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 AGGTCCTGAACAACATCAGACAAGTATGCGGTCTCAATAATGTCAACTGCACTGTATTAG 420
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GACTTACCTGGGGAGAATGGGATGAACCTACATTTGACTTGCATCCTGATGTTATTCTTG 480
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GAGCCGATGTGCTTTACGACTCAGCAAAGTTTGATGATCTCTTCGCGACAGTCTCATTTC 540
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 TCTTGGAAAATTCCCCGGGGGCGATGTTCATAACCACATATCACAATCGCAGTGGTCATC 600
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 ATTTGATTGAATTTTTAATGGTGAAGTGGGGTTTGAAGTGTTTAAAGCTTCGGGATGGCT 660
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 TCTCCTTCCTTCCGTCATGCAAGGCTGCTTCACTACGAGGGAACATTCAGCTTGTTGAGA 720
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 TTGCACTTGACAAGGAAAAACCGAACTGCTCTTCAGCTGACGAGAACAATCTGTAGCAGT 780
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 TATGTTCCATGCGGTTCAGCCTTATGGGGGCTGAAGGCAAGAACATGGCACAACTTTGGG 840
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GCATCCTCCGCACACAGGTTAACTTTTATAACACTAGGTGATTTCCAGGAGCAACATCAT 900
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GTAAAATTGCCCGTACAAAATATTCTCAAGTTTAACCATGGATTGTATTTGTTGGACAAG 960
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 CTTGTTAAACGAAGATTCACCAAACCAATAGTTATGACAGAATATTACACATCTCTACAC 1020
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GGGATGTTCCAACAGAACTTAATCGAACATGTTTTCCTTAGTATCAATGAGATGATAATC 1080
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 ATCAGACATTGCATGTAGGAGCAGCAATCAGTTGTAATACAAAATGCTCCTCATTGTGAG 1140
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GTTAACATGATTCCAACTCACAAATTTGATATGCCACTTGATATGATAGGACCGTCAAGT 1200
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 ATTAGTGTGTAGCTGATGAAACTTCTATCAGACTGTCCAGCATAGCACACACGAGAACTT 1260
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 CCTCTTCATTAGCACCAGTACGGATAAATCTGGAATCTGGATTGTTTCCAAATTCCGTAA 1320
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 ACAGGTAAATAAATGGCAGTGGACCATCGTGCAAGGATCTTTCATCCTGAGGGAATGGTC 1380
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 GACTCATGCCTAGGCTGTGGGATCATTGTCGAAAATTCCTTTTGGATGTCAGCATGTTCC 1440
consensus_4377#1 ------------------------------------------------------------
consensus_4377#0 CCTCAAGTTCTTGTAATCATCGTAGCAAAGAAATTTATCCTTGATTTTTAGCCAGTCAGC 1500
consensus_4377#1 -----------------------------------------------TTAGCCAGTCAGC 13
*************
consensus_4377#0 TGGCTTTGGCATAAAAATTGCTATATATCCTTCTCTGTCAGCAGAGGTGTTAAGCAGGTC 1560
consensus_4377#1 TGGCTTTGGCATAAAAATTGCTATATATCNTTCTCTGTCAGCAGAGGTGTTAAGCAGGTC 73
***************************** ******************************
consensus_4377#0 TGGTTGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCAC 1620
consensus_4377#1 TGGTNGTTTGATCAATCTATCATTGATCTCCAAAAGTGATCCTTTCACACAACACCTCAC 133
**** *******************************************************
consensus_4377#0 TACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTG 1680
consensus_4377#1 TACAAAAGAATTACTACTTGTGCAGACTTTACACAGCGCTGAATTTTCTTGCAAATGTTG 193
************************************************************
consensus_4377#0 TGCATTCCTTTTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATT 1740
consensus_4377#1 TGCATTCCTTNTGCGTTTTCCTGTGACTTTCATCTCACTGCGGTCTGACTTCCCAACATT 253
********** *************************************************
consensus_4377#0 GAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACC 1800
consensus_4377#1 GAAATCAACGGCAGTTATCCCCCCTTCCTCTTTCAATGCAATATGGGCTGAAGCTAAACC 313
************************************************************
consensus_4377#0 AACCACACACAATCCGTTTGGATGGCGGTACACACACTGATCATGTCCTGGATTCT---- 1856
consensus_4377#1 AACCACACACAATCCGTTTGGATGGCGGTACACATACTGATCATGTCCTGGATTGAGAAA 373
********************************** *******************
consensus_4377#0 -TCCGCCATTAGGGCGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTCGTGCCGCG 1915
consensus_4377#1 GTCAGCGACGAAGTAGCGGGCGAAGTTGGCCTCCACGGCGGAGGGCGGGAACG-GCGGAA 432
** ** * * * *** * ** * **** * ** * ** * * ** ** *
consensus_4377#0 CGTGGCCGGTGTGGGT-------------------------------------------- 1931
consensus_4377#1 GGTCGCCGGCATCGGGGACGACGAGGGCCCGGGTCTCCTCGTCGACCGCAGACTCCCGTT 492
** ***** * **
consensus_4377#0 ------------------------------------------------------------
consensus_4377#1 GCGGGGACCGTTCAAGCGGCGGCGGCGCGTCTAGGGTTGCGGATTCTTCCGCCATTAGGG 552
consensus_4377#0 --------------------------------------
consensus_4377#1 CGCGCGACGCGTGGATCTCCTCCGCCGCCGGAGAGCTC 590
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||