Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 4379 cluster # 4379       Sequences # 3       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4379#0 length = 894 sequences # 3  

consensusID : consensus_4379#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 894
fasta sequence
                              [GCTAGTATAGTATAGATCACTAGTACAAATACATCCAGAATCCTGATGCACGAATCACAATGTAAAAATTTTGCCGGCAGCCCAGCCCTGAAAAGTGTATTGCTATCTCATGATTCTTCCAGAGCTGTACTGGTAAATGGCATGCCATATGTGCTTCAGTGCCTACAGAAATGAACCAATGGAAAAGGATACAGGTGACAACAACGGAGTGGAACAGGCACGGCACAGGTCATGACTTGGCATCCGCACCAGTAGAGTCAGAGCTGAGAGTGACGCACGGGAACCAGTATCTGCGCTTGCCATCCCTGTGCCCATCGTCGATCATCGCAAGCCCTTCCTTGAGCAAAGTTTCAAGGACGTCAAATGGCACGG-CCAGTTGACCACGAGAAC-TTTC-TCTCGACTTGCTCTACGGTGACAAAA-CCTTCAGCCTGAGCTAGCTCAAGTATCCCATTGTGATCTTTATTCAGTTCTGTAGGAACAGAACGCACAAGCTTTTTCTTCCCAACAGAAATTACTTC-AAAACCACTACCAAGGACCTTCAGCTTACTTATCGCACGCAAACAATCATCTGATGTTAACGATCCAAGATCAGCTTTCCTCTTCTGACAGAGGAGTTTACGGAGATCTAGCAAGTCAATCAAGCCACCGTTGGTCGCTCTGGTTGCTATGCATATGTCAACAATCTGAACTCCCAATTCATAGTAGAAGTCACCAATCCCTAGAAGCTCTGCCCAAGCTCCTTTATTCGAAGCCAGCGGGTCTACTCCACCTTTTGCACACATCTCATGGAACTGTTGTCTAAATAGTGGATTTTTACGGATATCATTCTTATGCTTGCGTGCAAATTCTTCGAGCTGTGTCCGAAACGTCGCAAGCTGCTCCTTCATGACATCG]

[+] EMBL CB650168             [GCTAGTATAGTATAGATCACTAGTACAAATACATCCAGAATCCTGATGCACGAATCACAATGTAAAAATTTTGCCGGCAGCCCAGCCCTGAAAAGTGTATTGCTATCTCATGATTCTTCCAGAGCTGTACTGGTAAATGGCATGCCATATGTGCTTCAGTGCCTACAGAAATGAACCAATGGAAAAGGATACAGGTGACAACAACGGAGTGGAACAGGCACGGCACAGGTCATGACTTGGCATCCGCACCAGTAGAGTCAGAGCTGAGAGTGACGCACGGGAACCAGTATCTGCGCTTGCCATCCCTGTGCCCATCGTCGATCATCGCAAGCCCTTCCTTGAGCAAAGTTTCAAGGACGTC AATGGCACGG CCAGTTGACCACGAGAAC TTTC TCTCGACTTGCTCTACGGTGACAAAA CCTTCAGCCTGAGCTAGCTCAAGTATCCCATTGTGATCTTTATTCAGTTCTGTAGGAACAGAACGCACAAGCTTTTTCTTCCCAACAGAAATTACTTC AAAACCACTACCAAGGACCTTCAGCTTACTTATCGCACGCAAACAATCATCTGATGTTAACGATCCAAGATCAGCTTTCCTCTTCTGACAGAGGAGTTTACGGAGATCTAGCAAGTCAATCAAGCCACCGTTGGTCGCTCTGGTTGCTATGCATATGTCAACAATCTGAACTCCCAATTCATAGTAGAAGTCACCAATCCCTAGAAGCTCTGCCCAAGCTCCTTTATTCGAAGCCAGCGGGTCTACTCCACCTTTTGCACACATCTCATGGA                                                                                                        ]
[-] EMBL OSC31472             [                                                                                                                                                                                                                                                                                             AGTATCTGCGCTTGCCATCCCTGTGCCCATCGTCGATCATCGNAAGCCCTTCCTTGAGCAAAGTTTCAAGGANNTCAAATGGNACGG CCAGTTGACCACGAGAAC TTTC TCTCGACTTGCTCTACGGTGACAAAA CCTTCAGCCTGAGCTAGCTCAAGTATCCCATTGTGATCTTTATTCAGTTCTGTAGGAACAGAACGCACAAGCTTTTTCTTCCCAACAGAAATTACTTC AAAACCACTACCAAGGACCTTCAGCTTACTTATCGCACGCAAACAATCATCTGATGTTAACGATCCAAGATCAGCTTTCCTCTT                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CF323461             [                                                                                                                                                                                                                                                                                                                                                                 AGGACGTCAAAATGCACGGCCCAGTTGACCACGAGAACTTTTCTTCT GACTTGCTCTACGGTGACAAAACCCTTCAGCCTGAGCTAGCTCAAGTATCCCATTGTGATCTTTATTCAGTTCTGTAGGAACAGAACGCACAAGCTTTTTCTTCCCAACAGAAATTACTTCAAAAACCACTACCAAGGACCTTCAGCTTACTTATCGCACGCAAACAATCATCTGATGTTAACGATCCAAGATCAGCTTTCCTCTTCTGACAGAGGAGTTTACGGAGATCTAGCAAGTCAATCAAGCCACCGTTGGTCGCTCTGGTTGCTATGCATATGTCAACAATCTGAACTCCCAATTCATAGTAGAAGTCACCAATCCCTAGAAGCTCTGCCCAAGCTCCTTTATTCGAAGCCAGCGGGTCTACTCCAACTTTTGCACACATCTCATGGAACTGTTGTCTAAATAGTGGATTTTTACGGATATCATTCTTATGCTTGCGTGCAAATTCTTCGAGCTGTGTCCGAAACGTCGCAAGCTGCTCCTTCATGACATCG]


>consensus_4379#0 GCTAGTATAGTATAGATCACTAGTACAAATACATCCAGAATCCTGATGCACGAATCACAA TGTAAAAATTTTGCCGGCAGCCCAGCCCTGAAAAGTGTATTGCTATCTCATGATTCTTCC AGAGCTGTACTGGTAAATGGCATGCCATATGTGCTTCAGTGCCTACAGAAATGAACCAAT GGAAAAGGATACAGGTGACAACAACGGAGTGGAACAGGCACGGCACAGGTCATGACTTGG CATCCGCACCAGTAGAGTCAGAGCTGAGAGTGACGCACGGGAACCAGTATCTGCGCTTGC CATCCCTGTGCCCATCGTCGATCATCGCAAGCCCTTCCTTGAGCAAAGTTTCAAGGACGT CAAATGGCACGGCCAGTTGACCACGAGAACTTTCTCTCGACTTGCTCTACGGTGACAAAA CCTTCAGCCTGAGCTAGCTCAAGTATCCCATTGTGATCTTTATTCAGTTCTGTAGGAACA GAACGCACAAGCTTTTTCTTCCCAACAGAAATTACTTCAAAACCACTACCAAGGACCTTC AGCTTACTTATCGCACGCAAACAATCATCTGATGTTAACGATCCAAGATCAGCTTTCCTC TTCTGACAGAGGAGTTTACGGAGATCTAGCAAGTCAATCAAGCCACCGTTGGTCGCTCTG GTTGCTATGCATATGTCAACAATCTGAACTCCCAATTCATAGTAGAAGTCACCAATCCCT AGAAGCTCTGCCCAAGCTCCTTTATTCGAAGCCAGCGGGTCTACTCCACCTTTTGCACAC ATCTCATGGAACTGTTGTCTAAATAGTGGATTTTTACGGATATCATTCTTATGCTTGCGT GCAAATTCTTCGAGCTGTGTCCGAAACGTCGCAAGCTGCTCCTTCATGACATCG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)