These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence [AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGCCTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGAGGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCTGTCGTCCCCGCCACCGCCGCCGCCGC-CTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGGGGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGGCGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG] [+] EMBL CB661817 [AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGCCTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGAGGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCTGTCGTCCCCGCCACCGCCGCCGCCGC CTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTG ] [-] EMBL CB661816 [ CACCGCAG AGCCGCNCTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGGGGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGGCGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG] consensusID : consensus_4384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence [GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG] [-] EMBL CF323496 [GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGCAATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACTCTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTAACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGGTTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTTCCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTGGTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTCGTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4384#0 -----------------------AAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGC 37 consensus_4384#1 GTCAATGCAGGGTTAAATCAACTAAGGAGAAAGTTAACAGTCACCAGGAACTGGAAGTGC 60 ************************************* consensus_4384#0 AATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACT 97 consensus_4384#1 AATGTATACAAAAGAGATGTTAGCTGTTCAACCATGATCACAGCATACTCGTCGACAACT 120 ************************************************************ consensus_4384#0 CTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTA 157 consensus_4384#1 CTTTGAAATCACGAAAAAGTACTAGTCGCGCCTCCTTTTAGGAGTTCAAATAACCTTTTA 180 ************************************************************ consensus_4384#0 ACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGG 217 consensus_4384#1 ACGATGCTGAAAAACCATGGTGACAGAGCTCTAACGACTACAGAACGTTCGGCAATCAGG 240 ************************************************************ consensus_4384#0 TTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTT 277 consensus_4384#1 TTATCCAAGACCGTCTCCCTACAGGTAGTAATATCCTAGCACCGGCAACCACCATTTCTT 300 ************************************************************ consensus_4384#0 CCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTG 337 consensus_4384#1 CCCTAGCGAGACTGTTGAGCCGAGAGAAGCCTAATCGCTGTCCTCCCCGTCCCCGGCCTG 360 ************************************************************ consensus_4384#0 GTGGCCGCGAGCCATGTCGACGTCGACGTCGGCGTCCTCGTCGTCGTCGTCCTCCGCGGC 397 consensus_4384#1 GTGGCCGCGAGCCATGTCGACGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTC 420 ************************* * * * ** *** * ** ** ***** * * consensus_4384#0 CTCCTCCGGCGGCACCAAGTAGGCCCCGGGCTGCGGTGGCGCGCGGCGGCGGGTCCGCGA 457 consensus_4384#1 CTCCTC-GTCCTCGTC--CTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGC 477 ****** * * * * * * ** * ** * * * * * ***** consensus_4384#0 GGGGAGGATGTTGTTGAGGTCGACCTCGGCCAGCGGGTCGTCGCAGAACCCGTCGTCGCT 517 consensus_4384#1 CCTGGCGGCCTCCTCGGCGGCGGCCTCGTCGG---------------------------- 509 * * * * * * ** ***** * consensus_4384#0 GTCGTCCCCGCCACCGCCGCCGCCGCCTCCCCCACCTTCCTCGTCGTCGTCGTCGTCGTC 577 consensus_4384#1 ------------------------------------------------------------ consensus_4384#0 GTCGTCGTCGTCGTCGTCGCTGCTGTCCTCGTCGCTGCCGCCGCCCTCCTCCTCCTCCTC 637 consensus_4384#1 ------------------------------------------------------------ consensus_4384#0 GTCCTCGTCCTCGACCACCATCTTCCCCTTCCCCTTGTCCGCAGCCCGCGCCCTGGCGGC 697 consensus_4384#1 ------------------------------------------------------------ consensus_4384#0 CTCCTCGGCGGCGGCCTCGTCGGCGTCGGGGCGGGCGGACTTGGGTGGCGGGTCGAGCGG 757 consensus_4384#1 ------------------------------------------------------------ consensus_4384#0 GGCGAGGTCGGTGGCCTCGGCGTCGGGCTTGCGCTTTGCCGGCGAGGGCGAGGGCGCGGG 817 consensus_4384#1 ------------------------------------------------------------ consensus_4384#0 CGCGGGGTCGGTGGCGGGTGCCTCGTCGGTGGCCGCCATCGCGGAGGGG 866 consensus_4384#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||