These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 525 fasta sequence [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCATTGAAATGGCCTAAATGAAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCATTGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAA-TGATCTTTCGAATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATGGATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACGGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTATAGTACTGTTCAGGG] [+] EMBL CF323561 [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCATTGAAATGGCCTAAATGAAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCATTGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAA TGATCTTTCGAATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATGGATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTACGGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAAATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTATAGTACTGTTCAGGG] [-] EMBL BI795619 [TTTTCTCGACTGGCCATGGGTAATGAGTTTCGATGTATTGGGCGTTTCCGTTTAAAAATATAAGCTTTTTCGTGCTTGCTTGCGAGCA TGGAATGGCCTGAATGGAATGAATATTAAGATAAATAAAAGAAAGAAAATAAACCA TGAGAAAGTTATTCATTCTTATATTAATTTCCTATACTTAACCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAAGTGATCTTTCGAA TGGTCAAGACTCTCCTGTTTATGGCCCCTTCTATATGG TGTTGTTTCATTGAA TTGCTTCAGGCTCGCGATTCGACTTTGATCGTTATGGATTGGTACCAAACCAAGccc ] consensusID : consensus_4386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTATGGGCGTTTCCGTTTAAAAATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCACATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGTTCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTTATGGCCCCTTCTCATATGGTTGTGTTCTCAT] [-] EMBL BI797274 [TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTATGGGCGTTTCCGTTTAAAAATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCACATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGTTCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATTTCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTTATGGCCCCTTCTCATATGGTTGTGTTCTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4386#0 -TTTTCTCGACTGG-CCATGGGTA-ATG-AGTTTCGATGTATTGGGCGTTTCCGTTTAAA 56 consensus_4386#1 TTTTTCTCGACTGGGCCATGGGTACATGCAGTTTCGATGTAT-GGGCGTTTCCGTTTAAA 59 ************* ********* *** ************* ***************** consensus_4386#0 AATA--TAAGCTTTTTCGTGCTTGCTTGCGAGCATTG-AAATGGCCTAAATGA-AATGAA 112 consensus_4386#1 AATCATCAAGCTTTTTCGTGCTTGCTTGCGAGCCTTGCAAATGGCTGACATGGCAATGCA 119 *** ************************** *** ******* * *** **** * consensus_4386#0 TAT---TAAG-ATAAATAAAAGAAAGAAAATA-----------AACCATTGAG---AAAG 154 consensus_4386#1 CATATTCAAGCATACACATAACACAGCACACAGCAAACATAACACCCATTGAGCACAAGT 179 ** *** *** * * ** * ** * * * * ******** ** consensus_4386#0 TTATTCATTCTTATATTAATTTCCT-ATACTTAACC-AAACAACTTCCAATTCCGTTATT 212 consensus_4386#1 TCTTCCATTCTTATATTAATTTCCTCATACTTAACCCAAACAACTTCCAATTCCGTTATT 239 * * ******************** ********** *********************** consensus_4386#0 TCAACTACACCAAATGATCTTTCG-AATTGGTCAAGACTCTCCTGTTTATGGCCCCTTCT 271 consensus_4386#1 TCAACTACACCAAATGATCTTTCGCAATTGGTCAAGACTCTCCTGTT-ATGGCCCCTTCT 298 ************************ ********************** ************ consensus_4386#0 -ATATGGTTGTTGTTTCATTGAATTTGCTTCAGGCTCGCGATTCGACTTTAATCGTTATG 330 consensus_4386#1 CATATGGTTGTGTTCTCAT----------------------------------------- 317 ********** * **** consensus_4386#0 GATTGGTACCAAACCAAGATCAAGTCCTAGGCAAGCGGACCTAATTTTAACAGCCGGTAC 390 consensus_4386#1 ------------------------------------------------------------ consensus_4386#0 GGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAGCAAATGCCTGAACCAAA 450 consensus_4386#1 ------------------------------------------------------------ consensus_4386#0 ATACGTCATTGCTATGGGAGCTTGTACTATTACAGGGGGAATGTTCAGTACAGATTCCTA 510 consensus_4386#1 ------------------------------------------------------------ consensus_4386#0 TAGTACTGTTCAGGG 525 consensus_4386#1 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||