These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1836 fasta sequence [GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACTCCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATGGTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAGGAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGGACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGCGCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAAGCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGTTTTGGTAAAA-CCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGTTTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCTGATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCCTCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTCGTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGACTGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATGATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCTTCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTATCCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACAGTGCAAGAGAGCGCAAGCATGCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGCCCCTTTAGTGAAGAAGAACACCCGACCCGTGCAGCCTGGAAGTCATGGGCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAGTACTGTCAAGCAGGGTGAGGCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCAGAGAAATCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGCAGGAAGAGGACCCGACGCTGAACTTCGGCTCAAAATGCCCAAATATACAAAACTGTGTACAGACAGCGTATAGCTAGACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGATAGGAAAGAACATTTTTATAGGCAGAAACTATCAACTTAGATATATATAGTATATCTCT] [+] EMBL AK101955 [GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACTCCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATGGTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAGGAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGGACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGCGCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAAGCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGTTTTGGTAAAA CCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGTTTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCTGATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCCTCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTCGTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGACTGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATGATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCTTCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTATCCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACAGTGCAAGAGAGCGCAAGCATGCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGCCCCTTTAGTGAAGAAGAACACCCGACCCGTGCAGCCTGGAAGTCATGGGCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAGTACTGTCAAGCAGGGTGAGGCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCAGAGAAATCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGCAGGAAGAGGACCCGACGCTGAACTTCGGCTCAAAATGCCCAAATATACAAAACTGTGTACAGACAGCGTATAGCTAGACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGATAGGAAAGAACATTTTTATAGGCAGAAACTATCAACTTAGATATATATAGTATATCTCT] [+] EMBL AU062708 [ ATGCGATGCTTGGTTTGAGGAGCTCCGTAAGCGGAGAGTTGCTGAATTANGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGATCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAATGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCATCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGCAACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAATACTTCAGCAGAGGCTTTGGTAAAACCCCCTTGTTGAAAAAAAGGTTTGTCCTtg ] consensusID : consensus_4397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGTTCNANNCTNATNCGATTCGCCCNGCTCATTGACTCGAATTTTTGATTNNGGACAGTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGCCCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGGCCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAATCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNCTCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGAACATTTTTATAGGCCAGAAACTATNCTGTGCCGA] [-] EMBL AI096150 [NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGTTCNANNCTNATNCGATTCGCCCNGCTCATTGACTCGAATTTTTGATTNNGGACAGTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGCCCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGATGCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGGCCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAATCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTGCTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNCTCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGTGTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGTTGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGAACATTTTTATAGGCCAGAAACTATNCTGTGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4397#0 GACGACCTCCTCCCACACGCCTATCGTCATCCTCGCGATCGCCGCATTCATCCATCCACT 60 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 CCCCCCGCACGCCGAAGGAATAACCTAGACCAGAGACGACCAAGGAGAGCGTCTCAGATG 120 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GTGGTGGTGGTGGTGGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGAAGAAGGAG 180 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GAGGGGGAGGAGGAGGCGAGGGGAAGAGGAGGAGGAGGCGGCGTGGTGGGAGGGTGGGGG 240 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 ACGTGGGAGGAGCTGGTGCTGGGCAGCGCCGTCATCCGCCATGGGGGCGTTGCGTGGGGC 300 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GCCGTCGCCGCCGAGGTCCGGTCCCGCTCGCCGTGCGCCTTCTCGCCTGAGGAATGTGAA 360 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GCTAAATTTTCAGAGATACAAGCACGCTACTCTGCATGCGATGCTTGGTTTGAGGAGCTC 420 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 CGTAAGCGGAGAGTTGCTGAATTAAGAAATGATCTGAAGAAGTCTGAAAATTTTATTGGA 480 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TCCCTGCAGTCCATGATCAAAAGCCTCAGCAATAGCAAGCATGATGATGGCAACTCTGAA 540 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TGTCACACTAGTCATACTGAGTCATGTTCAAATAATGAAAATACAGCTGATAACAATTCA 600 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TCAAGCAAAGCATTGTCCAAAGATAGATCATCTGCTGCTAGTTTTACAGAGGAAGCAAGC 660 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 AACAGTCAGAAATCTGAAAAGGTGCAACACTGCGATACTGATTCAATTCAAGTGAACAAT 720 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 ACTTCAGCAGAGGTTTTGGTAAAACCCCTTGTTGAAAAAAAGGTTTGTGCTGAAGATGGT 780 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TTGCTTTGGGGCTCTAGAAAGAAAAGGGCCGTGAGGGATAGGAGGACTTTTCTGATGGCT 840 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GATAATAGTTGCAGAGCTGGCGAGAATACATCTACATCACACATACAGACAGATGGTTCC 900 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TCTGAAGGCTATGCAAAGAAGGGCTTGAAAACTCCAAATCTAGAATCTGGTGTGTCTGTC 960 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 GTTGAGAAAGCAAAACCAAACTTGGCAGAGATTTTGAAAACTATATCTACTCAAAGTGAC 1020 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TGTTATATGTTGCAACGCCGACTTGATGTCCAGCGGAAGCGGACTAGATACAAGAAGATG 1080 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 ATTCGCCGGCATATAGACTTCCGTATCCTTCATTCAAAGATCAAGAGTGGCGCAACATCT 1140 consensus_4397#1 ------------------------------------------------------------ consensus_4397#0 TCTACCAAGGAGCTTCTAAGAGACATTCTACTGTTTGTGAATAATGTCCTTGCCTTCTAT 1200 consensus_4397#1 -NCCCCNCCCGNNTTTTNTTCCCCCCCTTGGCAATTGNTCCGGGCCCCCCCGGGTCNCGT 59 ** ** * * * *** ** * * * consensus_4397#0 CCAAAGGCTACGTTAGAGCACATGGCTGCAATTGAACTTCGAAATATTGCATTCAGAACA 1260 consensus_4397#1 TCNANNCTNATNC-GATTCGCCCNGCT--CATTGA--CTCGAATTTTTG-ATTNNGGACA 113 * * * * * *** ***** ***** * *** *** * *** consensus_4397#0 GTGCAAGAGAGCGCAAGCAT-GCCCTCTAAGAGTTGTGGAGTAACAGGAGCAGCAACTGC 1319 consensus_4397#1 GTTCCAGNGGGTTCCAGCCTTNCCCTCTAAGGGTTTTGGNGTTACAGGNGCCGCCACTGC 173 ** * ** * * * *** * ********* *** *** ** ***** ** ** ***** consensus_4397#0 CCCTTTAGT-GAAGAAGAACACCCGACCCGTGCAGCC-TGGAAGTCATGGGCCTCATGAT 1377 consensus_4397#1 CCCCTTNGTTGAAGGAGGACACCCGACCCTTCCAGCCCTGNAAGTCATGGNCCTCATGAT 233 *** ** ** **** ** *********** * ***** ** ********* ********* consensus_4397#0 GCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAG--TACTGTCAAGCAGGGTGAGG 1435 consensus_4397#1 GCAAAGAGAAGCAAAGTTTCTTTAAAGGGGACTGGAAAGTTACTGTCAAGCAGGGTGAGG 293 ************************************* ******************** consensus_4397#0 CC-AAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGC-AGAGAAA 1493 consensus_4397#1 CCCAAGGGATCGCGTGGTGGTTCATCAGTGACAGCTAATGTAAAAACTATGCCAGAGAAA 353 ** ************************************************* ******* consensus_4397#0 TCCACCGGCCAAGAAGAGAGGCGTTGGGCGGCCTCCAAAGAATGGGC-AGAAGCGTGCTG 1552 consensus_4397#1 TCCACCGGCCAAGAAGAGAGGTGTTGGGCGGCCTCCAAAGAATGGGCCAGAAGCGTGCTG 413 ********************* ************************* ************ consensus_4397#0 CTGCACAGCAAGATAGCCCTAACAAAGGC-AGGAAGAGGACCCGACGCTGAACTTCGGC- 1610 consensus_4397#1 CTGCACAGCAAGATAGCCCTAACAAAGGNCAGGAAGAGGACCCGACGCTGAACTTCGGNC 473 **************************** **************************** consensus_4397#0 TCAAAATGCCCAAATATACAAAACTGTGTACAG-ACAGCGTATAGCTAGA-CCACATAGT 1668 consensus_4397#1 TCAAAATGCCCAAATATACAAAACTGTGTACAGCACAGCGTATAGCTAGNACCACATAGT 533 ********************************* *************** ********* consensus_4397#0 GTCGTCTCTTTCAGTGTTTACTTGTTACCTGGC-AAAGACTAGGTCGGAAATCAGAATGT 1727 consensus_4397#1 GTCGTCTCTTTCAGTGTTTACTTGTTACCTGGNCAAAGACTAGGTCGGAAATCAGAATGT 593 ******************************** ************************** consensus_4397#0 TGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAG-ATAGGAAAGA 1786 consensus_4397#1 TGTAGCAGGGAGTAGTACTGTATTTCCTGTTGTTGTCTTAAAAGGACAGGATAGGAAAGA 653 ************************************************* ********** consensus_4397#0 ACATTTTTATAGGC-AGAAACTATCAACTTAGATATATATAGTATATCTCT 1836 consensus_4397#1 ACATTTTTATAGGCCAGAAACTATN--CTGTGCCGA--------------- 687 ************** ********* ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||